prot_E-siliculosus-1a_M_contig93.17347.1 (polypeptide) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_M_contig93.17347.1
Unique Nameprot_E-siliculosus-1a_M_contig93.17347.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Sequence length246
Homology
BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 4.210e-29
Identity = 86/211 (40.76%), Postives = 114/211 (54.03%), Query Frame = 0
Query:   22 QKAYVTAVRSGLNKAYYAASVVDSGLVSTSKTGRMXXXXXVFKFLSR-VPFAGWLAGLAGALFTVGDHYVQTLQLAKIANLASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQGLDTFAVDTDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCKELLKGVKRDRLQGAGSLDEKVERLIRIIFPE 231
            +KAY  AVR G+  A+ A+SVV S LV+TSKTG +       K LS  VP  G L G+A A    GD Y+QT ++ KIA++A D+ E   LA+R+A                        G  G S+    L   A D D  +ME+F +  AN+E     A   T +EQAGRRLGK+H + LL  V   RL+GA S++EKVE L+R + PE
Sbjct:  808 RKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXGGGGWSQGEYALPDGARDRD--VMEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVGNGRLEGAKSIEEKVELLVRTVLPE 1016          
BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.110e-27
Identity = 88/238 (36.97%), Postives = 128/238 (53.78%), Query Frame = 0
Query:    4 KYTEEEDALGKKLARTPFQKAYVTAVRSGLNKAYYAASVVDSGLVSTSKTGRMXXXXXVFKFLSR-VPFAGWLAGLAGALFTVGDHYVQTLQLAKIANLASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQGLDTFAVD-TDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCKELLKGVKRDRLQGAGSLDEKVERLIRIIFPEYVQSPAWT 239
            ++TE+ +   K+LA  PF KAY TA+R+GL KAY AAS +DS  V TSKTG M       K +S  VP  G L  LAG     GD Y+QT +L KI  +A D+ E   LA+R+A  L   L +  +     ++   +    GGS   +G D    D ++E++ +Y +E     E TAD       ++  G+RLGK+H ++LLK ++   L G+    +K++ L+  I PE    PA T
Sbjct:  427 RHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTGGMGKVGAALKLMSSAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAGGSGCGRGADMMPGDMSEEDVFKYLLE-----EVTAD-----ERNDHGGKRLGKRHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAAT 654          
BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.040e-24
Identity = 82/230 (35.65%), Postives = 118/230 (51.30%), Query Frame = 0
Query:    3 SKYTEEEDALGKKLARTPFQKAYVTAVRSGLNKAYYAASVVDSGLVSTSKTGRMXXXXXVFKFLSR-VPFAGWLAGLAGALFTVGDHYVQTLQLAKIANLASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQGLDTFAVDTDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCKELLKGVKRDRLQGAGSLDEKVERLIRIIFPE 231
            S + E++   G++   +  +KAY  AVR G+  A+ A+SVV S LV+TSKTG +         LS  VP  G L G+A      GD Y+QT ++AKIA++A D+ E   LA+R+A                           G  +    L   A + D  +ME+F +  +N E     A   T +EQAG RLGK+H + LL  V    L+GA +++EKVE L+R +FPE
Sbjct:  816 SSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALALLSAAVPMVGGLGGIAAGALKTGDRYIQTRRVAKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXGWRQGEYALPDGAGEKD--VMEWFADEVSNFEPQHRHATRMTPEEQAGSRLGKKHLQTLLLAVGTGCLEGANNIEEKVELLVRTVFPE 1043          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FPS8_ECTSI4.210e-2940.76Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
D7FHA3_ECTSI2.110e-2736.97Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JBQ0_9PHAE1.040e-2435.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 65..85
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..64
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 86..246
NoneNo IPR availableTMHMMTMhelixcoord: 65..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig93contigE-siliculosus-1a_M_contig93:317317..319990 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a male2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig93.17347.1mRNA_E-siliculosus-1a_M_contig93.17347.1Ectocarpus siliculosus Ec864m_EcPH12_78m malemRNAE-siliculosus-1a_M_contig93 317317..319990 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_M_contig93.17347.1 ID=prot_E-siliculosus-1a_M_contig93.17347.1|Name=mRNA_E-siliculosus-1a_M_contig93.17347.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=246bp
MQSKYTEEEDALGKKLARTPFQKAYVTAVRSGLNKAYYAASVVDSGLVST
SKTGRMGKIGKVFKFLSRVPFAGWLAGLAGALFTVGDHYVQTLQLAKIAN
LASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQ
GLDTFAVDTDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCK
ELLKGVKRDRLQGAGSLDEKVERLIRIIFPEYVQSPAWTSAPAGSF
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