mRNA_E-siliculosus-1a_M_contig93.17347.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_M_contig93.17347.1
Unique Name	mRNA_E-siliculosus-1a_M_contig93.17347.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)

Homology

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Match: D7FPS8_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPS8_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 4.210e-29
Identity = 86/211 (40.76%), Postives = 114/211 (54.03%), Query Frame = 1

Query:   64 QKAYVTAVRSGLNKAYYAASVVDSGLVSTSKTGRMXXXXXVFKFLSR-VPFAGWLAGLAGALFTVGDHYVQTLQLAKIANLASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQGLDTFAVDTDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCKELLKGVKRDRLQGAGSLDEKVERLIRIIFPE 693
            +KAY  AVR G+  A+ A+SVV S LV+TSKTG +       K LS  VP  G L G+A A    GD Y+QT ++ KIA++A D+ E   LA+R+A                        G  G S+    L   A D D  +ME+F +  AN+E     A   T +EQAGRRLGK+H + LL  V   RL+GA S++EKVE L+R + PE
Sbjct:  808 RKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALKLLSAAVPMVGGLGGIASAALKTGDRYIQTRRVVKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXGGGGWSQGEYALPDGARDRD--VMEWFADEVANLEPQDHHATRTTPEEQAGRRLGKKHLQTLLLAVGNGRLEGAKSIEEKVELLVRTVLPE 1016

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 2.110e-27
Identity = 88/238 (36.97%), Postives = 128/238 (53.78%), Query Frame = 1

Query:   10 KYTEEEDALGKKLARTPFQKAYVTAVRSGLNKAYYAASVVDSGLVSTSKTGRMXXXXXVFKFLSR-VPFAGWLAGLAGALFTVGDHYVQTLQLAKIANLASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQGLDTFAVD-TDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCKELLKGVKRDRLQGAGSLDEKVERLIRIIFPEYVQSPAWT 717
            ++TE+ +   K+LA  PF KAY TA+R+GL KAY AAS +DS  V TSKTG M       K +S  VP  G L  LAG     GD Y+QT +L KI  +A D+ E   LA+R+A  L   L +  +     ++   +    GGS   +G D    D ++E++ +Y +E     E TAD       ++  G+RLGK+H ++LLK ++   L G+    +K++ L+  I PE    PA T
Sbjct:  427 RHTEDMNVQRKELALPPFSKAYYTAIRTGLCKAYLAASAIDSDWVITSKTGGMGKVGAALKLMSSAVPLIGGLPKLAGKALEAGDTYLQTRRLVKITAMAPDTVECCSLARRLALQLTDGLRNNASATDDDNNQVWVNTTAGGSGCGRGADMMPGDMSEEDVFKYLLE-----EVTAD-----ERNDHGGKRLGKRHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAAT 654

[Close]

BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Match: A0A6H5JBQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ0_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.040e-24
Identity = 82/230 (35.65%), Postives = 118/230 (51.30%), Query Frame = 1

Query:    7 SKYTEEEDALGKKLARTPFQKAYVTAVRSGLNKAYYAASVVDSGLVSTSKTGRMXXXXXVFKFLSR-VPFAGWLAGLAGALFTVGDHYVQTLQLAKIANLASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQGLDTFAVDTDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCKELLKGVKRDRLQGAGSLDEKVERLIRIIFPE 693
            S + E++   G++   +  +KAY  AVR G+  A+ A+SVV S LV+TSKTG +         LS  VP  G L G+A      GD Y+QT ++AKIA++A D+ E   LA+R+A                           G  +    L   A + D  +ME+F +  +N E     A   T +EQAG RLGK+H + LL  V    L+GA +++EKVE L+R +FPE
Sbjct:  816 SSHMEDQWMQGREQGLSQARKAYFNAVRDGVCNAFLASSVVGSNLVATSKTGGIGTAGKALALLSAAVPMVGGLGGIAAGALKTGDRYIQTRRVAKIADIARDAVECCSLARRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXGWRQGEYALPDGAGEKD--VMEWFADEVSNFEPQHRHATRMTPEEQAGSRLGKKHLQTLLLAVGTGCLEGANNIEEKVELLVRTVFPE 1043

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig93.17347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 3

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FPS8_ECTSI	4.210e-29	40.76	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]
D7FHA3_ECTSI	2.110e-27	36.97	Hypothetical leucine rich repeat protein n=1 Tax=E...	[more]
A0A6H5JBQ0_9PHAE	1.040e-24	35.65	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig93.17347.1	prot_E-siliculosus-1a_M_contig93.17347.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	polypeptide	E-siliculosus-1a_M_contig93 317317..319990 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622936481.5215783-CDS-E-siliculosus-1a_M_contig93:317316..317394	1622936481.5215783-CDS-E-siliculosus-1a_M_contig93:317316..317394	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 317317..317394 -
1696251097.706993-CDS-E-siliculosus-1a_M_contig93:317316..317394	1696251097.706993-CDS-E-siliculosus-1a_M_contig93:317316..317394	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 317317..317394 -
1622936481.547183-CDS-E-siliculosus-1a_M_contig93:317660..317753	1622936481.547183-CDS-E-siliculosus-1a_M_contig93:317660..317753	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 317661..317753 -
1696251097.7173636-CDS-E-siliculosus-1a_M_contig93:317660..317753	1696251097.7173636-CDS-E-siliculosus-1a_M_contig93:317660..317753	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 317661..317753 -
1622936481.5699255-CDS-E-siliculosus-1a_M_contig93:317882..318019	1622936481.5699255-CDS-E-siliculosus-1a_M_contig93:317882..318019	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 317883..318019 -
1696251097.7271664-CDS-E-siliculosus-1a_M_contig93:317882..318019	1696251097.7271664-CDS-E-siliculosus-1a_M_contig93:317882..318019	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 317883..318019 -
1622936481.5906553-CDS-E-siliculosus-1a_M_contig93:319150..319289	1622936481.5906553-CDS-E-siliculosus-1a_M_contig93:319150..319289	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 319151..319289 -
1696251097.7382812-CDS-E-siliculosus-1a_M_contig93:319150..319289	1696251097.7382812-CDS-E-siliculosus-1a_M_contig93:319150..319289	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 319151..319289 -
1622936481.6133497-CDS-E-siliculosus-1a_M_contig93:319420..319537	1622936481.6133497-CDS-E-siliculosus-1a_M_contig93:319420..319537	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 319421..319537 -
1696251097.7536654-CDS-E-siliculosus-1a_M_contig93:319420..319537	1696251097.7536654-CDS-E-siliculosus-1a_M_contig93:319420..319537	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 319421..319537 -
1622936481.6296139-CDS-E-siliculosus-1a_M_contig93:319816..319990	1622936481.6296139-CDS-E-siliculosus-1a_M_contig93:319816..319990	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 319817..319990 -
1696251097.7685575-CDS-E-siliculosus-1a_M_contig93:319816..319990	1696251097.7685575-CDS-E-siliculosus-1a_M_contig93:319816..319990	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig93 319817..319990 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_M_contig93:317317..319990-
coding sequence from alignment at E-siliculosus-1a_M_contig93:317317..319990-

protein sequence of mRNA_E-siliculosus-1a_M_contig93.17347.1

>prot_E-siliculosus-1a_M_contig93.17347.1 ID=prot_E-siliculosus-1a_M_contig93.17347.1|Name=mRNA_E-siliculosus-1a_M_contig93.17347.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=246bp
MQSKYTEEEDALGKKLARTPFQKAYVTAVRSGLNKAYYAASVVDSGLVST
SKTGRMGKIGKVFKFLSRVPFAGWLAGLAGALFTVGDHYVQTLQLAKIAN
LASDSEEFGQLAKRVAEGLAGCLSHGTTTGGPAHSAAGMGGERGGSESSQ
GLDTFAVDTDENIMEYFVECAANVESTADGAGAGTLDEQAGRRLGKQHCK
ELLKGVKRDRLQGAGSLDEKVERLIRIIFPEYVQSPAWTSAPAGSF

mRNA from alignment at E-siliculosus-1a_M_contig93:317317..319990-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_M_contig93.17347.1 ID=mRNA_E-siliculosus-1a_M_contig93.17347.1|Name=mRNA_E-siliculosus-1a_M_contig93.17347.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2674bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:317317..319990- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAGTCAAAATACACAGAGGAAGAAGACGCACTCGGAAAGAAACTGGC
TCGCACCCCATTTCAGAAGGCATACGTCACCGCCGTCAGAAGTGGCCTAA
ACAAAGCTTACTACGCCGCGAGCGTCGTCGACAGTGGGCTAGTGTCCACG
AGCAAGACCGGCCGTATGGGCAAGGTGGGTGCCTTTGGGAGATAGATATG
TGGTCGCAAGACGAGAGATCGAATATGTGACATATTTCGCGGTGCTGCTG
GAGCACATGGATGGCAGAGAATCACTTCGTGGTGACCGTGGGTGGCAGAC
CCAAAGATTACCGACAAACTGTGTGAACTGAAGTCGCAGGCACTTAGAAC
AGGCCGGATGGAAGAGACGAGCTCCTTGATGTCTCGATATTGTGCAGTGC
TTCCGTCGCCTCTATACCAACCGAAGAGCGACCCGTTCGTTGCTCCTGTG
CAGATAGGGAAGGTCTTCAAATTTCTGTCTCGTGTCCCGTTCGCCGGCTG
GCTGGCGGGCCTAGCAGGAGCGCTTTTCACGGTCGGCGACCACTACGTCC
AGACTCTGCAGCTGGCGAAGGTTAGTTATCCTGCTCTCCTGCGGCGGCCG
TGGATTCCAGCGTCTGCTAGCCGCCTATGAGCGTAGCCTGTCTCCACTAT
TGATGAGCGGTATACAAGGCCCCACTCCTCTCTATTGCTGTGCTTCGTCA
GATCGCCAACTTGGCATCAGATTCGGAGGAGTTTGGCCAGCTGGCGAAAA
GAGTGGCCGAGGGACTCGCCGGCTGCCTTTCACACGGAACAACGACAGGA
GGCCCCGCGCACAGCGCAGCGGGCATGGGCGGGGAGAGAGGTGAGGGGGG
GTGTTTAGCAAAAGCTTCACGATCGCAGCTTGTTTGCCCCTTGCACGAGA
GCGCCCTCGATCACGTGGTATTTCATAGCGATCGGAATCTTTGGCTTGTG
CACACGGAATCCATCGTTGTTCGTTTTGCTTTGCACCATGTCTTCCTCCC
GAACACCATGGGCAAGTGATTACGTTTCGTAGAAGACTCGGCTGCGTGGG
GCGATCGGTCGCTCAGTCTTGCGCGCTTGTCTGCACACAACAAGACAACC
CCCTACTCTGGAACCCGTCAACGAACACAGACGAGTTTTTTTTCTAAGCC
ACGATAGATGACTTGAACCCGCGGCCACCTTGTGCCAGCGTCGGGCATCG
ACTCCATCGGTTCTTGTGGAAAGCCAATCTCGCCGGTCTGAGCCTGCATA
TTGAGAAGATTTGACCGAACAACCTCACCCTCAGATCCTTTGGGACCCAT
TTCTTCTTCAGGTTCTTGCCAAAATCAGATTTTGGCCAAAAAACGCTCCC
TCTTGATCCGATCTTTTTTATGCTGCGATCGGACTGGAGGCAAAACTTGT
CCAGTTCTGATGCGACGATACTATTGTTGTCGGGCCAGATTTTGTTTGTA
CGAGATACCGGTGAAACTGTTGTCAGGGTGTGGGTGTCTGTCCTTCCGTT
TGTCTCGCCTTCGACCCTTCACGTCTGCGTACGACGCACTCTCGCATATG
CGCAAAAACCGCACACGCCACACATGGCCGAAAGGCGGCATATAAATGTC
TTGTTGAGTACCTACCGCCGCTGCCGCCCCGGCGAGCGTGCGTGCAGATT
ATGATGAGCACGATTTCCTCGCCAACGATACGGAAGAGGGATGGGATAGC
TACAAGCAGATACCCAAGGTTACGTGCCACGCTCGTCGGTCGCGGTTGTG
CGGTGATGCGCGAGGGGGACTCTCAACACGGAGGCATGTTCCGCGAAGAC
CAGATCGGTTCCCCATAAGATGCGCGACCCAAACGTTTCGCTTGATGTTT
TCGTTACAGTAGGCCGTCCGATGTTGTTATCACGTCATAACAAAAGGTTC
GAGGAGCCCGAGATCGGATTGCTGTACGAATGGGTGTGACGACGGACCAC
TGCGTGCTCTGTGTCTCGCAGGCGGTTCCGAATCAAGTCAGGGCTTGGAT
ACCTTCGCAGTCGACACGGACGAGAACATCATGGAGTATTTTGTCGAATG
TGCGGCGAACGTCGAGTCTACCGCCGACGGAGCTGGGGCAGGGACACTTG
ACGAGCAGGTAAGTCGTTGGCTGGTGAGATCTCACGCCGCGGCCTATTTT
GGTGGGACGAAGCCGTTGTTTTCAGTAGCGATATCTCCCTCGTCGGGCAT
CTTTCATGTGCACACACACCTTTTTATTTGTCTTCAGGCGGGAAGACGGC
TTGGGAAGCAGCACTGCAAGGAACTACTGAAGGGTGTGAAGCGAGATCGC
CTTCAGGGCGCGGGTTCCCTTGATGAAAAGGTATTTTTAGAGTTTTCGTC
TTTGGAAGAATCGCGGCCATGTTCTCGTGTGCGTATCGCTCGACATTCGG
GCTCTTGGTTGCCGATGTATTTGTTCTGTTTTGTCTGGTTCGAGACGTTA
GGCTCGACGAAATCAACGTTGGAGTGGCTTTGGCGACGCGCTCCTGAACT
TTAACATAGGGAAGGCAGGGTGCGCACAGCCGGGGCGCTAAGGCAACAAC
GCATTGGTTCTGTCAGTCATTCACTTGGGTATTTGCGGCGATCCAGGTCG
AACGGCTAATCCGGATAATTTTCCCCGAGTACGTCCAATCTCCGGCCTGG
ACGTCAGCACCCGCCGGAAGCTTT

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig93:317317..319990-

>mRNA_E-siliculosus-1a_M_contig93.17347.1 ID=mRNA_E-siliculosus-1a_M_contig93.17347.1|Name=mRNA_E-siliculosus-1a_M_contig93.17347.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=1476bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig93:317317..319990- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGCAGTCAAAATACACAGAGGAAGAAGACGCACTCGGAAAGAAACTGGC
TCGCACCCCATTTCAGAAGGCATACGTCACCGCCGTCAGAAGTGGCCTAA
ACAAAGCTTACTACGCCGCGAGCGTCGTCGACAGTGGGCTAGTGTCCACG
AGCAAGACCGGCCGTATGGGCAAGATGCAGTCAAAATACACAGAGGAAGA
AGACGCACTCGGAAAGAAACTGGCTCGCACCCCATTTCAGAAGGCATACG
TCACCGCCGTCAGAAGTGGCCTAAACAAAGCTTACTACGCCGCGAGCGTC
GTCGACAGTGGGCTAGTGTCCACGAGCAAGACCGGCCGTATGGGCAAGAT
AGGGAAGGTCTTCAAATTTCTGTCTCGTGTCCCGTTCGCCGGCTGGCTGG
CGGGCCTAGCAGGAGCGCTTTTCACGGTCGGCGACCACTACGTCCAGACT
CTGCAGCTGGCGAAGATAGGGAAGGTCTTCAAATTTCTGTCTCGTGTCCC
GTTCGCCGGCTGGCTGGCGGGCCTAGCAGGAGCGCTTTTCACGGTCGGCG
ACCACTACGTCCAGACTCTGCAGCTGGCGAAGATCGCCAACTTGGCATCA
GATTCGGAGGAGTTTGGCCAGCTGGCGAAAAGAGTGGCCGAGGGACTCGC
CGGCTGCCTTTCACACGGAACAACGACAGGAGGCCCCGCGCACAGCGCAG
CGGGCATGGGCGGGGAGAGAGATCGCCAACTTGGCATCAGATTCGGAGGA
GTTTGGCCAGCTGGCGAAAAGAGTGGCCGAGGGACTCGCCGGCTGCCTTT
CACACGGAACAACGACAGGAGGCCCCGCGCACAGCGCAGCGGGCATGGGC
GGGGAGAGAGGCGGTTCCGAATCAAGTCAGGGCTTGGATACCTTCGCAGT
CGACACGGACGAGAACATCATGGAGTATTTTGTCGAATGTGCGGCGAACG
TCGAGTCTACCGCCGACGGAGCTGGGGCAGGGACACTTGACGAGCAGGCG
GTTCCGAATCAAGTCAGGGCTTGGATACCTTCGCAGTCGACACGGACGAG
AACATCATGGAGTATTTTGTCGAATGTGCGGCGAACGTCGAGTCTACCGC
CGACGGAGCTGGGGCAGGGACACTTGACGAGCAGGCGGGAAGACGGCTTG
GGAAGCAGCACTGCAAGGAACTACTGAAGGGTGTGAAGCGAGATCGCCTT
CAGGGCGCGGGTTCCCTTGATGAAAAGGCGGGAAGACGGCTTGGGAAGCA
GCACTGCAAGGAACTACTGAAGGGTGTGAAGCGAGATCGCCTTCAGGGCG
CGGGTTCCCTTGATGAAAAGGTCGAACGGCTAATCCGGATAATTTTCCCC
GAGTACGTCCAATCTCCGGCCTGGACGTCAGCACCCGCCGGAAGCTTTGT
CGAACGGCTAATCCGGATAATTTTCCCCGAGTACGTCCAATCTCCGGCCT
GGACGTCAGCACCCGCCGGAAGCTTT