mRNA_E-siliculosus-1a_F_contig105.354.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: D8LSF1_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF1_ECTSI) HSP 1 Score: 723 bits (1867), Expect = 6.360e-257 Identity = 361/375 (96.27%), Postives = 365/375 (97.33%), Query Frame = 1 Query: 379 MTTETGYAEEVATPGAAPPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEGKEERARHAATLAAAAVNGDGTHAHAGADNRVLIVEDLEADGDILGFFGALDSPTATGPTLDTYISVRAGREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGALVGTGEAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAKARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWEAA 1503
M TETGYAEEVATPGAAPPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEG+EERARHAATLAAAAVNGDGTHAHAGADNRVLIVEDLEADGD+LGFFGALDSPTATGPTLDTYI VR GREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGAL GT EAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAK GEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYG+SGS+PENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWEAA
Sbjct: 1 MATETGYAEEVATPGAAPPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEGEEERARHAATLAAAAVNGDGTHAHAGADNRVLIVEDLEADGDVLGFFGALDSPTATGPTLDTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGALAGTEEAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAK-----GEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGNSGSSPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWEAA 370
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A6H5K4I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I0_9PHAE) HSP 1 Score: 338 bits (866), Expect = 1.830e-98 Identity = 172/185 (92.97%), Postives = 174/185 (94.05%), Query Frame = 1 Query: 517 MDASWQDVLVLDGQQEGKEERARHAATLAAAAVNGDGTHAHAGADNRVLIVEDLEADGDILGFFGALDSPTATGPTLDTYISVRAGREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGALVGTGEAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAKARTACGE 1071
MDASWQDVLVLDGQQEGKEERARHAATLAAAAVNGDGTHAHAG DNRVL+VEDLEADGDILGFFGALDSPTATGPTLDTYI VR GREVDRPTTRLLTRALHGWLSGPAAAAAAT RD LG L G AGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVM+RDAKARTAC E
Sbjct: 1 MDASWQDVLVLDGQQEGKEERARHAATLAAAAVNGDGTHAHAGVDNRVLVVEDLEADGDILGFFGALDSPTATGPTLDTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATGRDWLGGLAGAEAAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMVRDAKARTACFE 185
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A4D9D9L5_9STRA (Nudix hydrolase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9L5_9STRA) HSP 1 Score: 164 bits (415), Expect = 7.210e-41 Identity = 91/203 (44.83%), Postives = 129/203 (63.55%), Query Frame = 1 Query: 913 ANEEEEGELVDWVDTRGRVIC-----ALPRPVVHSNNVLHRGAGVMIRDAKARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAG--ETVKWQEDEVEWGSYVPWEEVVSKV----SEGEWEFVPDGLQVWQHYL 1488
A+ +E+ E V WV+ G + LPRP++H NVLH+GAG+++RDA++R V+ H+R++ KR+FPS+YDMF+GGVS ME TTA REL EELG GP ++ +A E ++T R+ + LV+T +NRCFV V++Y V G E+ +EV+WG ++P EEV +V GEW FVPDGL VW +L
Sbjct: 179 ADGDEKVERVSWVNNHGHDLLPKSSKGLPRPLMHRLNVLHKGAGILVRDAQSR-----VFVHQRSTHKRIFPSLYDMFVGGVSLFMEDTKTTARRELQEELGFGP--AACAAQE-------ESTDFRFLFDVLVETSYNRCFVDVYEYVVAGGQEESAVLDPEEVQWGDWIPMEEVTRRVLLNGRSGEWTFVPDGLLVWAAFL 367
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A7S0GKM9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKM9_9STRA) HSP 1 Score: 141 bits (355), Expect = 4.360e-34 Identity = 94/248 (37.90%), Postives = 120/248 (48.39%), Query Frame = 1 Query: 934 ELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMI------------RDAKARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVV-AGETVKWQEDEVEWGSYVPWEEVVSKV------------------SEG----------------EWEFVPDGLQVWQHYLDWEAA*RGRGQGSSFA 1536
ELV+ VD G + +PR +VH N+LHRG GVM+ D ++ VY HRRT KRVFPS+YDMF+GGVSG EPP TA REL EELGL N D + + M +R C V T +NRC VS+F Y + + + WQE+EV WG++VP+ V S+G EW+FVPDGL VW+ + W R G FA
Sbjct: 8 ELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGLVRV----LRTTNGDDTHQQLSEMLFR--CTVCTSYNRCVVSMFAYTMDNQRDVISWQEEEVAWGTFVPYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWR-----RQNGQRFA 244
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A7S2NSK3_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSK3_9STRA) HSP 1 Score: 144 bits (362), Expect = 8.890e-33 Identity = 89/231 (38.53%), Postives = 127/231 (54.98%), Query Frame = 1 Query: 913 ANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMI-RDAK----ARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETV-KWQEDEVEWGSYV--PWEEVVSKVS--------------------------EGEW---EFVPDGLQVWQHYLDW 1494
A+ ++ ELV+ VD+ G + +PR +VH N+LHRG G+++ +D T +VY H+RTSTKR+FPS+YDMF+GGVS E + TA RE+ EELGL +G DG + + +C++ T +NRC V+VF YR A E + KWQE+EV WG YV P E +++S +GEW +FVPDGL VW+ + +W
Sbjct: 296 ADVSKKSELVEMVDSVGNPLGIIPRDLVHKLNLLHRGIGIVVAKDCHIVQGTSTELPDVYVHQRTSTKRIFPSLYDMFVGGVSEAGEEAMVTASREVAEELGL-----------QRGLDGALSEPLF---KCVICTSYNRCIVTVFTYRCNAKEEILKWQEEEVAWGDYVSYPIIEAAAQLSIERLIEGGKWPGKQQGPLGPLQLEYNDGEWKTWDFVPDGLLVWEAWKEW 512
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A7S0CKQ7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKQ7_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.600e-31 Identity = 93/248 (37.50%), Postives = 122/248 (49.19%), Query Frame = 1 Query: 934 ELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMI------------RDAKARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAG-ETVKWQEDEVEWGSYVPWEEVVSKV------------------SEG----------------EWEFVPDGLQVWQHYLDWEAA*RGRGQGSSFA 1536
ELV+ VD G + +PR +VH N+LHRG GVM+ D ++ VY HRRT KRVFPS+YDMF+GGVSG EPP TA REL EELGL GS +++ L + M +R C V T +NRC VS+F Y + + + WQ++EV WG++V + V S+G EW+FVPDGL VW+ + W R G FA
Sbjct: 217 ELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGLVRVLRDGSGSDDEKTPQL--SEMLFR--CTVCTSYNRCVVSMFAYTMDNHRDVISWQKEEVAWGTFVEYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWR-----RQNGQRFA 455
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A7S4T0F2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T0F2_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.090e-30 Identity = 85/237 (35.86%), Postives = 122/237 (51.48%), Query Frame = 1 Query: 934 ELVDWVDTRG-RVICALPRPVVHSNNVLHRGAGVMIRDAK--ARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQG--DDGLKTTSMRYRGE---CLVQTGHNRCFVSVFDYRVVAGE--TVKWQEDEVEWGSYVPWEEV-------VSKVSEG--------------------------------EWEFVPDGLQVWQHYLDWE 1497
E V+ VD G ++ LPR +VH N+LHRG GV++ + VY HRRT TKR+FPS+YDMF+GGVS E TA RE+ EE+GL S G + +G DD + + E C++ T +NRC V+VF Y + E ++KWQE+EV WG +VP++ V + ++ EG +W++VPDGL VW+ +L W+
Sbjct: 200 EWVEMVDASGSNMLGILPRILVHKLNLLHRGIGVVVLSDHDHQQHQTENVYVHRRTDTKRIFPSLYDMFVGGVSSAFEDSKLTAAREVAEEIGL----SKGLQQQLEGGNDDAIDEKTQILSNELFKCVICTSYNRCVVTVFTYDCMENEKDSIKWQEEEVAWGGFVPYDVVEKSARLSIDRLKEGGKWPGTGMDEEEESEEVGDHNTLVEGSKEVWKKWDYVPDGLLVWEAWLRWK 432
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: B7FXH4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXH4_PHATC) HSP 1 Score: 135 bits (341), Expect = 1.900e-30 Identity = 87/237 (36.71%), Postives = 120/237 (50.63%), Query Frame = 1 Query: 934 ELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMI-RDAKAR-------------TACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRV-VAGETVKWQEDEVEWGSYVPWEEVVSKV--------SEGEW-----------------------------EFVPDGLQVWQHYL 1488
E+V+ +D G+++ +PR +VH N+LHRG GV I RD + T ++YCHRRTSTKR+FP +YDMF+GGV+ E TALRE+GEELGL A N GD+ + T C+V TG+NRC V ++ Y + E V WQ +EV WG +VP+ V + V S+G W ++VPDGL VW+ +L
Sbjct: 225 EIVEMMDRDGKILGKVPRNLVHEYNLLHRGVGVFITRDVPLQLPIHGARNSSPSPTHQPDLYCHRRTSTKRIFPDLYDMFVGGVALAGEDSRRTALREVGEELGL--------AQGNIGDEAILT--------CVVCTGYNRCVVDLYCYVMNTMAERVSWQAEEVAWGDFVPFNAVQASVDLSIQRLVSDGSWPGRYPPIQSSYNGVFPKDEFSSIRNWDSWDYVPDGLLVWEAWL 445
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A2E3A4P0_9BACT (NUDIX hydrolase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E3A4P0_9BACT) HSP 1 Score: 124 bits (312), Expect = 2.810e-29 Identity = 78/189 (41.27%), Postives = 102/189 (53.97%), Query Frame = 1 Query: 934 ELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAKARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWEA 1500
ELVD +D + RV+ R + N+LHRG G++ D G +Y HRRT TK VFP MYDMF+GGV G E A RE+ EELG+ G PE RY L NR V+V Y+V ++ Q +EVEWGSY+ EE+ +K+ GEW FVPDGL++W H + +A
Sbjct: 10 ELVDLIDEQDRVVGWARRERIRRLNLLHRGVGILCLDPD-----GRIYVHRRTETKDVFPGMYDMFVGGVVGKGEDRDLAAAREIAEELGI-----EGPQPE---------PICRY----LYLGPLNRSLVAV--YKVTWEGKIRHQPEEVEWGSYMSIEEIEAKI--GEWNFVPDGLEIWNHIRELKA 171
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: K0R8X5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8X5_THAOC) HSP 1 Score: 131 bits (330), Expect = 3.660e-29 Identity = 86/230 (37.39%), Postives = 121/230 (52.61%), Query Frame = 1 Query: 934 ELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMI-RDAKA----RTA-CGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRG--ECLVQTGHNRCFVSVFDYRV-VAGETVKWQEDEVEWGSYVPWEEVVSK--------VSEG-------------------------------EWEFVPDGLQVWQ 1479
ELVD V + G+V+ ++PR +VH N+LHRG G++I +D RT +VYCH+RT TKRVFPS+YDMF+GGVS + E TA RE+ EELG+ N ++GL S + +C + T +NRC VS F Y + E++ WQE+EV+WG +VP++ V V++G W++VPDGL VWQ
Sbjct: 197 ELVDMVCSDGQVLGSVPRNLVHKYNLLHRGIGMIISKDDNIFETFRTGRLPQVYCHQRTDTKRVFPSLYDMFVGGVSASFERSRLTAAREVAEELGM-------KRALNLMEEGLDDESPLSQELFQCTIATSYNRCVVSFFTYTCDTSVESLAWQEEEVQWGQFVPYDIVEESADLSIERLVNDGAWPGEKVILDYEPTIMSLKERYSEEKYEGWERWDYVPDGLLVWQ 419 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig105.354.1 >prot_E-siliculosus-1a_F_contig105.354.1 ID=prot_E-siliculosus-1a_F_contig105.354.1|Name=mRNA_E-siliculosus-1a_F_contig105.354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=476bp MVQCATTRVFSQGYSSSSSSVVFLAVAAGLISTSAASSAAAATLFVAAPYback to top mRNA from alignment at E-siliculosus-1a_F_contig105:25253..28611- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig105.354.1 ID=mRNA_E-siliculosus-1a_F_contig105.354.1|Name=mRNA_E-siliculosus-1a_F_contig105.354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3359bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:25253..28611- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig105:25253..28611- >mRNA_E-siliculosus-1a_F_contig105.354.1 ID=mRNA_E-siliculosus-1a_F_contig105.354.1|Name=mRNA_E-siliculosus-1a_F_contig105.354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2856bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:25253..28611- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |