mRNA_E-siliculosus-1a_F_contig105.354.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig105.354.1
Unique NamemRNA_E-siliculosus-1a_F_contig105.354.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: D8LSF1_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF1_ECTSI)

HSP 1 Score: 723 bits (1867), Expect = 6.360e-257
Identity = 361/375 (96.27%), Postives = 365/375 (97.33%), Query Frame = 1 
Query:  379 MTTETGYAEEVATPGAAPPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEGKEERARHAATLAAAAVNGDGTHAHAGADNRVLIVEDLEADGDILGFFGALDSPTATGPTLDTYISVRAGREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGALVGTGEAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAKARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWEAA 1503
            M TETGYAEEVATPGAAPPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEG+EERARHAATLAAAAVNGDGTHAHAGADNRVLIVEDLEADGD+LGFFGALDSPTATGPTLDTYI VR GREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGAL GT EAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAK     GEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYG+SGS+PENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWEAA
Sbjct:    1 MATETGYAEEVATPGAAPPELVAGASDFETFFGAYRIRPRRESESLMDASWQDVLVLDGQQEGEEERARHAATLAAAAVNGDGTHAHAGADNRVLIVEDLEADGDVLGFFGALDSPTATGPTLDTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGALAGTEEAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAK-----GEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGNSGSSPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWEAA 370
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BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A6H5K4I0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I0_9PHAE)

HSP 1 Score: 338 bits (866), Expect = 1.830e-98
Identity = 172/185 (92.97%), Postives = 174/185 (94.05%), Query Frame = 1 
Query:  517 MDASWQDVLVLDGQQEGKEERARHAATLAAAAVNGDGTHAHAGADNRVLIVEDLEADGDILGFFGALDSPTATGPTLDTYISVRAGREVDRPTTRLLTRALHGWLSGPAAAAAATRRDRLGALVGTGEAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAKARTACGE 1071
            MDASWQDVLVLDGQQEGKEERARHAATLAAAAVNGDGTHAHAG DNRVL+VEDLEADGDILGFFGALDSPTATGPTLDTYI VR GREVDRPTTRLLTRALHGWLSGPAAAAAAT RD LG L G   AGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVM+RDAKARTAC E
Sbjct:    1 MDASWQDVLVLDGQQEGKEERARHAATLAAAAVNGDGTHAHAGVDNRVLVVEDLEADGDILGFFGALDSPTATGPTLDTYICVRTGREVDRPTTRLLTRALHGWLSGPAAAAAATGRDWLGGLAGAEAAGRPANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMVRDAKARTACFE 185
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BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A4D9D9L5_9STRA (Nudix hydrolase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9L5_9STRA)

HSP 1 Score: 164 bits (415), Expect = 7.210e-41
Identity = 91/203 (44.83%), Postives = 129/203 (63.55%), Query Frame = 1 
Query:  913 ANEEEEGELVDWVDTRGRVIC-----ALPRPVVHSNNVLHRGAGVMIRDAKARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAG--ETVKWQEDEVEWGSYVPWEEVVSKV----SEGEWEFVPDGLQVWQHYL 1488
            A+ +E+ E V WV+  G  +       LPRP++H  NVLH+GAG+++RDA++R     V+ H+R++ KR+FPS+YDMF+GGVS  ME   TTA REL EELG GP  ++ +A E       ++T  R+  + LV+T +NRCFV V++Y V  G  E+     +EV+WG ++P EEV  +V      GEW FVPDGL VW  +L
Sbjct:  179 ADGDEKVERVSWVNNHGHDLLPKSSKGLPRPLMHRLNVLHKGAGILVRDAQSR-----VFVHQRSTHKRIFPSLYDMFVGGVSLFMEDTKTTARRELQEELGFGP--AACAAQE-------ESTDFRFLFDVLVETSYNRCFVDVYEYVVAGGQEESAVLDPEEVQWGDWIPMEEVTRRVLLNGRSGEWTFVPDGLLVWAAFL 367
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BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A7S0GKM9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GKM9_9STRA)

HSP 1 Score: 141 bits (355), Expect = 4.360e-34
Identity = 94/248 (37.90%), Postives = 120/248 (48.39%), Query Frame = 1 
Query:  934 ELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMI------------RDAKARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVV-AGETVKWQEDEVEWGSYVPWEEVVSKV------------------SEG----------------EWEFVPDGLQVWQHYLDWEAA*RGRGQGSSFA 1536
            ELV+ VD  G  +  +PR +VH  N+LHRG GVM+             D ++      VY HRRT  KRVFPS+YDMF+GGVSG  EPP  TA REL EELGL           N  D   + + M +R  C V T +NRC VS+F Y +    + + WQE+EV WG++VP+  V                      S+G                EW+FVPDGL VW+ +  W      R  G  FA
Sbjct:    8 ELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGLVRV----LRTTNGDDTHQQLSEMLFR--CTVCTSYNRCVVSMFAYTMDNQRDVISWQEEEVAWGTFVPYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWR-----RQNGQRFA 244
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BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A7S2NSK3_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSK3_9STRA)

HSP 1 Score: 144 bits (362), Expect = 8.890e-33
Identity = 89/231 (38.53%), Postives = 127/231 (54.98%), Query Frame = 1 
Query:  913 ANEEEEGELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMI-RDAK----ARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETV-KWQEDEVEWGSYV--PWEEVVSKVS--------------------------EGEW---EFVPDGLQVWQHYLDW 1494
            A+  ++ ELV+ VD+ G  +  +PR +VH  N+LHRG G+++ +D        T   +VY H+RTSTKR+FPS+YDMF+GGVS   E  + TA RE+ EELGL            +G DG  +  +    +C++ T +NRC V+VF YR  A E + KWQE+EV WG YV  P  E  +++S                          +GEW   +FVPDGL VW+ + +W
Sbjct:  296 ADVSKKSELVEMVDSVGNPLGIIPRDLVHKLNLLHRGIGIVVAKDCHIVQGTSTELPDVYVHQRTSTKRIFPSLYDMFVGGVSEAGEEAMVTASREVAEELGL-----------QRGLDGALSEPLF---KCVICTSYNRCIVTVFTYRCNAKEEILKWQEEEVAWGDYVSYPIIEAAAQLSIERLIEGGKWPGKQQGPLGPLQLEYNDGEWKTWDFVPDGLLVWEAWKEW 512
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A7S0CKQ7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKQ7_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.600e-31
Identity = 93/248 (37.50%), Postives = 122/248 (49.19%), Query Frame = 1 
Query:  934 ELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMI------------RDAKARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAG-ETVKWQEDEVEWGSYVPWEEVVSKV------------------SEG----------------EWEFVPDGLQVWQHYLDWEAA*RGRGQGSSFA 1536
            ELV+ VD  G  +  +PR +VH  N+LHRG GVM+             D ++      VY HRRT  KRVFPS+YDMF+GGVSG  EPP  TA REL EELGL      GS  +++    L  + M +R  C V T +NRC VS+F Y +    + + WQ++EV WG++V +  V                      S+G                EW+FVPDGL VW+ +  W      R  G  FA
Sbjct:  217 ELVEMVDGSGTPLAMVPRELVHRFNLLHRGIGVMVFDTRNAGDGDXXXDVRSDLRIPRVYVHRRTDHKRVFPSLYDMFVGGVSGAGEPPELTARRELAEELGLVRVLRDGSGSDDEKTPQL--SEMLFR--CTVCTSYNRCVVSMFAYTMDNHRDVISWQKEEVAWGTFVEYPMVQQAARLSIDRLKSRNAWPGDDFSDGDLQTVDCLDIKGTDWKEWDFVPDGLLVWEAWEQWR-----RQNGQRFA 455
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BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A7S4T0F2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T0F2_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.090e-30
Identity = 85/237 (35.86%), Postives = 122/237 (51.48%), Query Frame = 1 
Query:  934 ELVDWVDTRG-RVICALPRPVVHSNNVLHRGAGVMIRDAK--ARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQG--DDGLKTTSMRYRGE---CLVQTGHNRCFVSVFDYRVVAGE--TVKWQEDEVEWGSYVPWEEV-------VSKVSEG--------------------------------EWEFVPDGLQVWQHYLDWE 1497
            E V+ VD  G  ++  LPR +VH  N+LHRG GV++       +     VY HRRT TKR+FPS+YDMF+GGVS   E    TA RE+ EE+GL    S G   + +G  DD +   +     E   C++ T +NRC V+VF Y  +  E  ++KWQE+EV WG +VP++ V       + ++ EG                                +W++VPDGL VW+ +L W+
Sbjct:  200 EWVEMVDASGSNMLGILPRILVHKLNLLHRGIGVVVLSDHDHQQHQTENVYVHRRTDTKRIFPSLYDMFVGGVSSAFEDSKLTAAREVAEEIGL----SKGLQQQLEGGNDDAIDEKTQILSNELFKCVICTSYNRCVVTVFTYDCMENEKDSIKWQEEEVAWGGFVPYDVVEKSARLSIDRLKEGGKWPGTGMDEEEESEEVGDHNTLVEGSKEVWKKWDYVPDGLLVWEAWLRWK 432
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BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: B7FXH4_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXH4_PHATC)

HSP 1 Score: 135 bits (341), Expect = 1.900e-30
Identity = 87/237 (36.71%), Postives = 120/237 (50.63%), Query Frame = 1 
Query:  934 ELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMI-RDAKAR-------------TACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRV-VAGETVKWQEDEVEWGSYVPWEEVVSKV--------SEGEW-----------------------------EFVPDGLQVWQHYL 1488
            E+V+ +D  G+++  +PR +VH  N+LHRG GV I RD   +             T   ++YCHRRTSTKR+FP +YDMF+GGV+   E    TALRE+GEELGL        A  N GD+ + T        C+V TG+NRC V ++ Y +    E V WQ +EV WG +VP+  V + V        S+G W                             ++VPDGL VW+ +L
Sbjct:  225 EIVEMMDRDGKILGKVPRNLVHEYNLLHRGVGVFITRDVPLQLPIHGARNSSPSPTHQPDLYCHRRTSTKRIFPDLYDMFVGGVALAGEDSRRTALREVGEELGL--------AQGNIGDEAILT--------CVVCTGYNRCVVDLYCYVMNTMAERVSWQAEEVAWGDFVPFNAVQASVDLSIQRLVSDGSWPGRYPPIQSSYNGVFPKDEFSSIRNWDSWDYVPDGLLVWEAWL 445
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BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: A0A2E3A4P0_9BACT (NUDIX hydrolase n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E3A4P0_9BACT)

HSP 1 Score: 124 bits (312), Expect = 2.810e-29
Identity = 78/189 (41.27%), Postives = 102/189 (53.97%), Query Frame = 1 
Query:  934 ELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMIRDAKARTACGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSKVSEGEWEFVPDGLQVWQHYLDWEA 1500
            ELVD +D + RV+    R  +   N+LHRG G++  D       G +Y HRRT TK VFP MYDMF+GGV G  E     A RE+ EELG+      G  PE            RY    L     NR  V+V  Y+V     ++ Q +EVEWGSY+  EE+ +K+  GEW FVPDGL++W H  + +A
Sbjct:   10 ELVDLIDEQDRVVGWARRERIRRLNLLHRGVGILCLDPD-----GRIYVHRRTETKDVFPGMYDMFVGGVVGKGEDRDLAAAREIAEELGI-----EGPQPE---------PICRY----LYLGPLNRSLVAV--YKVTWEGKIRHQPEEVEWGSYMSIEEIEAKI--GEWNFVPDGLEIWNHIRELKA 171
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Match: K0R8X5_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8X5_THAOC)

HSP 1 Score: 131 bits (330), Expect = 3.660e-29
Identity = 86/230 (37.39%), Postives = 121/230 (52.61%), Query Frame = 1 
Query:  934 ELVDWVDTRGRVICALPRPVVHSNNVLHRGAGVMI-RDAKA----RTA-CGEVYCHRRTSTKRVFPSMYDMFIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMRYRG--ECLVQTGHNRCFVSVFDYRV-VAGETVKWQEDEVEWGSYVPWEEVVSK--------VSEG-------------------------------EWEFVPDGLQVWQ 1479
            ELVD V + G+V+ ++PR +VH  N+LHRG G++I +D       RT    +VYCH+RT TKRVFPS+YDMF+GGVS + E    TA RE+ EELG+           N  ++GL   S   +   +C + T +NRC VS F Y    + E++ WQE+EV+WG +VP++ V           V++G                                W++VPDGL VWQ
Sbjct:  197 ELVDMVCSDGQVLGSVPRNLVHKYNLLHRGIGMIISKDDNIFETFRTGRLPQVYCHQRTDTKRVFPSLYDMFVGGVSASFERSRLTAAREVAEELGM-------KRALNLMEEGLDDESPLSQELFQCTIATSYNRCVVSFFTYTCDTSVESLAWQEEEVQWGQFVPYDIVEESADLSIERLVNDGAWPGEKVILDYEPTIMSLKERYSEEKYEGWERWDYVPDGLLVWQ 419
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig105.354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSF1_ECTSI6.360e-25796.27Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A6H5K4I0_9PHAE1.830e-9892.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9D9L5_9STRA7.210e-4144.83Nudix hydrolase domain-containing protein n=2 Tax=... [more]
A0A7S0GKM9_9STRA4.360e-3437.90Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2NSK3_9STRA8.890e-3338.53Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S0CKQ7_9STRA1.600e-3137.50Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S4T0F2_9STRA1.090e-3035.86Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
B7FXH4_PHATC1.900e-3036.71Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A2E3A4P0_9BACT2.810e-2941.27NUDIX hydrolase n=2 Tax=Planctomycetes bacterium T... [more]
K0R8X5_THAOC3.660e-2937.39Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig105contigE-siliculosus-1a_F_contig105:25253..28611 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size1428
Model size2268
Exons6
Ec32 orthologEc-21_003460.1
Ec32 ortholog descriptionNUDIX hydrolase domain-like
Hectar predicted targeting categorychloroplast
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.L
EggNOG OGs2S4X7@2759,COG0494@1
EggNOG free text desc.m7G(5')pppN diphosphatase activity
Seed eggNOG ortholog2880.D8LSF1
Seed ortholog evalue4.8e-207
Seed ortholog score727.2
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig105.354.1prot_E-siliculosus-1a_F_contig105.354.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig105 26015..28533 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927550.9781415-UTR-E-siliculosus-1a_F_contig105:25252..260141622927550.9781415-UTR-E-siliculosus-1a_F_contig105:25252..26014Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig105 25253..26014 -
1696318581.435919-UTR-E-siliculosus-1a_F_contig105:25252..260141696318581.435919-UTR-E-siliculosus-1a_F_contig105:25252..26014Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig105 25253..26014 -
1622927551.068405-UTR-E-siliculosus-1a_F_contig105:28533..286111622927551.068405-UTR-E-siliculosus-1a_F_contig105:28533..28611Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig105 28534..28611 -
1696318581.5065544-UTR-E-siliculosus-1a_F_contig105:28533..286111696318581.5065544-UTR-E-siliculosus-1a_F_contig105:28533..28611Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig105 28534..28611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927550.990969-CDS-E-siliculosus-1a_F_contig105:26014..261041622927550.990969-CDS-E-siliculosus-1a_F_contig105:26014..26104Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 26015..26104 -
1696318581.4525743-CDS-E-siliculosus-1a_F_contig105:26014..261041696318581.4525743-CDS-E-siliculosus-1a_F_contig105:26014..26104Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 26015..26104 -
1622927551.0013266-CDS-E-siliculosus-1a_F_contig105:26475..266451622927551.0013266-CDS-E-siliculosus-1a_F_contig105:26475..26645Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 26476..26645 -
1696318581.4620779-CDS-E-siliculosus-1a_F_contig105:26475..266451696318581.4620779-CDS-E-siliculosus-1a_F_contig105:26475..26645Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 26476..26645 -
1622927551.0133238-CDS-E-siliculosus-1a_F_contig105:26767..269481622927551.0133238-CDS-E-siliculosus-1a_F_contig105:26767..26948Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 26768..26948 -
1696318581.4696982-CDS-E-siliculosus-1a_F_contig105:26767..269481696318581.4696982-CDS-E-siliculosus-1a_F_contig105:26767..26948Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 26768..26948 -
1622927551.026994-CDS-E-siliculosus-1a_F_contig105:27228..276741622927551.026994-CDS-E-siliculosus-1a_F_contig105:27228..27674Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 27229..27674 -
1696318581.4812233-CDS-E-siliculosus-1a_F_contig105:27228..276741696318581.4812233-CDS-E-siliculosus-1a_F_contig105:27228..27674Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 27229..27674 -
1622927551.0421526-CDS-E-siliculosus-1a_F_contig105:27900..280341622927551.0421526-CDS-E-siliculosus-1a_F_contig105:27900..28034Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 27901..28034 -
1696318581.4893582-CDS-E-siliculosus-1a_F_contig105:27900..280341696318581.4893582-CDS-E-siliculosus-1a_F_contig105:27900..28034Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 27901..28034 -
1622927551.0538833-CDS-E-siliculosus-1a_F_contig105:28126..285331622927551.0538833-CDS-E-siliculosus-1a_F_contig105:28126..28533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 28127..28533 -
1696318581.4973862-CDS-E-siliculosus-1a_F_contig105:28126..285331696318581.4973862-CDS-E-siliculosus-1a_F_contig105:28126..28533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig105 28127..28533 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig105.354.1

>prot_E-siliculosus-1a_F_contig105.354.1 ID=prot_E-siliculosus-1a_F_contig105.354.1|Name=mRNA_E-siliculosus-1a_F_contig105.354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=476bp
MVQCATTRVFSQGYSSSSSSVVFLAVAAGLISTSAASSAAAATLFVAAPY
STASSACLSSAAGSSCCSWRSRVLRTYPLHRRARTPSTSRCLWPSLRSVA
MTTETGYAEEVATPGAAPPELVAGASDFETFFGAYRIRPRRESESLMDAS
WQDVLVLDGQQEGKEERARHAATLAAAAVNGDGTHAHAGADNRVLIVEDL
EADGDILGFFGALDSPTATGPTLDTYISVRAGREVDRPTTRLLTRALHGW
LSGPAAAAAATRRDRLGALVGTGEAGRPANEEEEGELVDWVDTRGRVICA
LPRPVVHSNNVLHRGAGVMIRDAKARTACGEVYCHRRTSTKRVFPSMYDM
FIGGVSGTMEPPLTTALRELGEELGLGPYGSSGSAPENQGDDGLKTTSMR
YRGECLVQTGHNRCFVSVFDYRVVAGETVKWQEDEVEWGSYVPWEEVVSK
VSEGEWEFVPDGLQVWQHYLDWEAA*
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mRNA from alignment at E-siliculosus-1a_F_contig105:25253..28611-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig105.354.1 ID=mRNA_E-siliculosus-1a_F_contig105.354.1|Name=mRNA_E-siliculosus-1a_F_contig105.354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3359bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:25253..28611- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGGGCCGTCGGGGTAGGCGTGGTTCGCGCGTGGGCAGGACAGAGGGAGG
AAGACAAAAGGGAGGCGTGGCTCAAACTATGGTACAGTGTGCAACGACGA
GAGTTTTCAGCCAGGGATACAGCAGCAGCAGCAGCAGCGTTGTGTTTCTA
GCCGTAGCAGCCGGCTTGATCTCGACCTCGGCAGCATCATCAGCGGCGGC
GGCAACCCTTTTCGTAGCCGCACCTTACAGCACTGCGAGCAGCGCTTGTC
TCTCCTCCGCCGCTGGCAGCTCGTGTTGCAGCTGGAGAAGCAGGGTCCTT
AGAACTTATCCCTTGCACCGCCGGGCTCGTACTCCTAGTACATCGCGTTG
CCTGTGGCCAAGCCTACGGAGTGTAGCGATGACAACGGAAACAGGATACG
CCGAGGAAGTAGCAACGCCAGGGGCGGCGCCGCCTGAACTGGTAGCTGGG
GCAAGCGATTTCGAAACGTTCTTCGGGGCATACAGGTAAGAGAGGAAGGA
ATGTGAGAGAGAAAAATTGCCGGTAACTCATTTCTATCTCGCCGCAAGTT
TCTCACCACTGAAGGTGCCGTACGCAGGATCCGACCCAGGCGCGAGTCGG
AGAGCCTGATGGACGCCAGCTGGCAGGATGTGTTGGTGCTTGACGGCCAG
CAAGAAGGAAAAGAGGAGAGGGCGCGACACGCTGCTACTCTTGCCGCTGC
TGCGGTCAACGGTAAGACGTACACCAACAAAAGAGTGTGTGATGTACGGT
GAGCTACGCGATGAAGCACGAAATCTTGTCGACGGGCTTGGATTGTGAGA
CAAAGGGAAAAATTCGGTGTTGCCGGTGACGTTGGTGTTTAGGGGCGTGA
AATGGCCGAAATGCAGGTGTTCTCCTCTTGACTCTTCTCGCTTGGGTTCG
TGCGATGACCCCCGTCGCCCATCCGATACGCGGGCAGGCGACGGCACTCA
CGCTCATGCTGGCGCGGACAACAGAGTTCTGATCGTCGAGGACTTGGAAG
CAGACGGCGACATTCTCGGCTTCTTTGGAGCGCTGGACTCGCCCACCGCC
ACCGGCCCGACTCTCGATACCTACATCTCTGTGCGAGCCGGGCGCGAGGT
AGACCGACCAACGACCAGGCTTCTCACCAGAGCCCTGCACGGCTGGCTCA
GCGGTCCGGCGGCGGCAGCTGCAGCGACGCGTCGAGATCGACTTGGAGCC
CTAGTGGGCACGGGAGAGGCAGGGCGGCCAGCAAACGAGGAGGAGGAGGG
GGAGCTAGTCGACTGGGTCGACACGAGAGGGAGGGTTATCTGCGCGCTGC
CCAGGCCGGTGGTGCACTCTAACAATGTGCTTCATCGCGGGGCTGGGGTT
ATGATCAGGGACGCAAAGGCGAGGACGGCGTGTGTAGGTCAGAACCTGCT
TGTTTTACCTCCTACTAGGAAAAGAGCAAGCCCGTCACCAAATTACCATC
ACCGCCGCTCGACCCCACCCCACCCGAACCCACCCACGCCCCCCTCAGAT
CTGCCCCCCAAGCACAAGCACCTTTCATTTTTTTCTTCACGTTCGGTCTA
TGTTCCGTTGCTACCCTCTCACGCGACCGACGGCGGTGGCTGATTGCGGC
CTCACGTCCACCAGACGCCTCCTCTCTGTGTTACCTCTACCCTTCCCGCG
CTACATTACGTAGGGAGAGGTTTACTGCCATCGCCGAACGTCAACAAAGA
GGGTGTTCCCTTCCATGTACGACATGTTCATCGGCGGGGTGTCGGGCACC
ATGGAGCCGCCGTTGACCACCGCGCTTCGAGAGCTCGGCGAGGAGCTTGG
GCTAGGCCCCTACGGCAGCAGCGGCAGCGCCCCTGAGAATCAAGGTGAAC
TGCTTCCTTTCGTTCATTGTCCAGGGCGGCGACCAATGTGTAGTACTGTA
GCGCTCTATTGTTGAACCTACTTTCTGAAATTTATATGCATGGTGGGTAC
GTTCCCAAAATTGCAGGGGACGACGGTCTGAAGACTACCTCCATGCGGTA
TCGGGGGGAGTGCCTGGTTCAGACGGGCCACAATCGCTGCTTCGTGTCTG
TGTTCGACTACCGCGTAGTCGCCGGGGAGACGGTGAAGTGGCAGGAGGAC
GAGGTGGAGTGGGGGAGCTACGTGCCGTGGGAGGAGGTAGGCACTTACTG
ACACTTGGCCACCCACGACGCGTAGGATATTATCGTCGTCTTGTTTGCTA
CTCTGTGCGGTAACGACGAACCACCCCTTTGGTGTCGGCGCGGTGGTGGT
TTTTCTACGTTTCAGGTGAGCACAATGCGAAAACCTTCTCGAGGACCAAA
CGTACACATCGCCTCTGTCGGTGTTCTGCTGCAGTGGTAGAACGTTTTAG
TCAAGGCAGCTTGCTTACGTGCTTTTTGGTGTTTCAGCCAGAGGATTCGT
GCATTTGGGGTGAGTATTGGACGACTGTGCTGCCTTGTGCATCATCGTGC
ATTTCACGTTTCATTTTGTCTCCCGCCTCTTCCGCTATGCATCGCGTAAT
TCGACAGGTTGTGTCCAAGGTATCCGAGGGGGAATGGGAGTTTGTCCCAG
ATGGACTGCAGGTTTGGCAACACTACCTCGATTGGGAAGCGGCGTGACGG
GGAAGAGGACAAGGAAGTTCTTTTGCACCCCCACCGGCCCTCGCGCGTGG
TGCAAAGAATCACGTCGCGTTCCTCTTCCGTGTGCGCGGTATTTTGAGCA
GGGTCAGCATGTTGTGCGTTTGCGTACGGAGAGATTGAACGGAGACCCCG
TATTTGTAACAGCAGGAACTCACATGTGTTCGTCACCATGGTGATTTTCG
CATGATTACGGTGCACATTTGTGTCCACGGGTATTGGGGCTGTCAGGGGC
TTACCTTCGACACGTAAAGATAATGTACTCGAACTTTAGCACCGTAAAAA
AAATCCGGTTAGAGACGCCCCGAATGACTTGCCGTACTGCTGTGGGTGTG
ATGTTCTGGGGGAAGGGGCGGACTCTGTTGCTTGGTACAAGGGGGGCACA
AGTGGTCTCTCTCTTGTCGGCCCCTCGTCGCAACTGTTGGGGGCTAGGGG
CACACTGCTGCTGCGGCTAAATTTTTCTGTTGTGGCTGCTGCTGCAATCG
AGCACAGTTTTGGCTCTATTCACCTTCGGATACGATTGGTTCAACATGCC
TCTCTACTTTTGGCGAGGCAGAGGAACATGAAGGGAGAGTTGCTCAGCTT
TAGCAATGAAGAGAAATCCAGGAAGTCAATCAAGACGTTGTCTTTGTCTT
TGTTTGTTGGCTAGTTTTGTTGTGGTTTGGAGAGACGGCGAAAAACGAAA
AAAAAAAATCGTGTCAGGGTTCGGCTGAAGGTAGGCAGCGACGGTTTTGC
ACCCGGTCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig105:25253..28611-

>mRNA_E-siliculosus-1a_F_contig105.354.1 ID=mRNA_E-siliculosus-1a_F_contig105.354.1|Name=mRNA_E-siliculosus-1a_F_contig105.354.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2856bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:25253..28611- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTACAGTGTGCAACGACGAGAGTTTTCAGCCAGGGATACAGCAGCAG
CAGCAGCAGCGTTGTGTTTCTAGCCGTAGCAGCCGGCTTGATCTCGACCT
CGGCAGCATCATCAGCGGCGGCGGCAACCCTTTTCGTAGCCGCACCTTAC
AGCACTGCGAGCAGCGCTTGTCTCTCCTCCGCCGCTGGCAGCTCGTGTTG
CAGCTGGAGAAGCAGGGTCCTTAGAACTTATCCCTTGCACCGCCGGGCTC
GTACTCCTAGTACATCGCGTTGCCTGTGGCCAAGCCTACGGAGTGTAGCG
ATGACAACGGAAACAGGATACGCCGAGGAAGTAGCAACGCCAGGGGCGGC
GCCGCCTGAACTGGTAGCTGGGGCAAGCGATTTCGAAACGTTCTTCGGGG
CATACAGATGGTACAGTGTGCAACGACGAGAGTTTTCAGCCAGGGATACA
GCAGCAGCAGCAGCAGCGTTGTGTTTCTAGCCGTAGCAGCCGGCTTGATC
TCGACCTCGGCAGCATCATCAGCGGCGGCGGCAACCCTTTTCGTAGCCGC
ACCTTACAGCACTGCGAGCAGCGCTTGTCTCTCCTCCGCCGCTGGCAGCT
CGTGTTGCAGCTGGAGAAGCAGGGTCCTTAGAACTTATCCCTTGCACCGC
CGGGCTCGTACTCCTAGTACATCGCGTTGCCTGTGGCCAAGCCTACGGAG
TGTAGCGATGACAACGGAAACAGGATACGCCGAGGAAGTAGCAACGCCAG
GGGCGGCGCCGCCTGAACTGGTAGCTGGGGCAAGCGATTTCGAAACGTTC
TTCGGGGCATACAGGATCCGACCCAGGCGCGAGTCGGAGAGCCTGATGGA
CGCCAGCTGGCAGGATGTGTTGGTGCTTGACGGCCAGCAAGAAGGAAAAG
AGGAGAGGGCGCGACACGCTGCTACTCTTGCCGCTGCTGCGGTCAACGGA
TCCGACCCAGGCGCGAGTCGGAGAGCCTGATGGACGCCAGCTGGCAGGAT
GTGTTGGTGCTTGACGGCCAGCAAGAAGGAAAAGAGGAGAGGGCGCGACA
CGCTGCTACTCTTGCCGCTGCTGCGGTCAACGGCGACGGCACTCACGCTC
ATGCTGGCGCGGACAACAGAGTTCTGATCGTCGAGGACTTGGAAGCAGAC
GGCGACATTCTCGGCTTCTTTGGAGCGCTGGACTCGCCCACCGCCACCGG
CCCGACTCTCGATACCTACATCTCTGTGCGAGCCGGGCGCGAGGTAGACC
GACCAACGACCAGGCTTCTCACCAGAGCCCTGCACGGCTGGCTCAGCGGT
CCGGCGGCGGCAGCTGCAGCGACGCGTCGAGATCGACTTGGAGCCCTAGT
GGGCACGGGAGAGGCAGGGCGGCCAGCAAACGAGGAGGAGGAGGGGGAGC
TAGTCGACTGGGTCGACACGAGAGGGAGGGTTATCTGCGCGCTGCCCAGG
CCGGTGGTGCACTCTAACAATGTGCTTCATCGCGGGGCTGGGGTTATGAT
CAGGGACGCAAAGGCGAGGACGGCGTGTGCGACGGCACTCACGCTCATGC
TGGCGCGGACAACAGAGTTCTGATCGTCGAGGACTTGGAAGCAGACGGCG
ACATTCTCGGCTTCTTTGGAGCGCTGGACTCGCCCACCGCCACCGGCCCG
ACTCTCGATACCTACATCTCTGTGCGAGCCGGGCGCGAGGTAGACCGACC
AACGACCAGGCTTCTCACCAGAGCCCTGCACGGCTGGCTCAGCGGTCCGG
CGGCGGCAGCTGCAGCGACGCGTCGAGATCGACTTGGAGCCCTAGTGGGC
ACGGGAGAGGCAGGGCGGCCAGCAAACGAGGAGGAGGAGGGGGAGCTAGT
CGACTGGGTCGACACGAGAGGGAGGGTTATCTGCGCGCTGCCCAGGCCGG
TGGTGCACTCTAACAATGTGCTTCATCGCGGGGCTGGGGTTATGATCAGG
GACGCAAAGGCGAGGACGGCGTGTGGAGAGGTTTACTGCCATCGCCGAAC
GTCAACAAAGAGGGTGTTCCCTTCCATGTACGACATGTTCATCGGCGGGG
TGTCGGGCACCATGGAGCCGCCGTTGACCACCGCGCTTCGAGAGCTCGGC
GAGGAGCTTGGGCTAGGCCCCTACGGCAGCAGCGGCAGCGCCCCTGAGAA
TCAAGGGAGAGGTTTACTGCCATCGCCGAACGTCAACAAAGAGGGTGTTC
CCTTCCATGTACGACATGTTCATCGGCGGGGTGTCGGGCACCATGGAGCC
GCCGTTGACCACCGCGCTTCGAGAGCTCGGCGAGGAGCTTGGGCTAGGCC
CCTACGGCAGCAGCGGCAGCGCCCCTGAGAATCAAGGGGACGACGGTCTG
AAGACTACCTCCATGCGGTATCGGGGGGAGTGCCTGGTTCAGACGGGCCA
CAATCGCTGCTTCGTGTCTGTGTTCGACTACCGCGTAGTCGCCGGGGAGA
CGGTGAAGTGGCAGGAGGACGAGGTGGAGTGGGGGAGCTACGTGCCGTGG
GAGGAGGGGACGACGGTCTGAAGACTACCTCCATGCGGTATCGGGGGGAG
TGCCTGGTTCAGACGGGCCACAATCGCTGCTTCGTGTCTGTGTTCGACTA
CCGCGTAGTCGCCGGGGAGACGGTGAAGTGGCAGGAGGACGAGGTGGAGT
GGGGGAGCTACGTGCCGTGGGAGGAGGTTGTGTCCAAGGTATCCGAGGGG
GAATGGGAGTTTGTCCCAGATGGACTGCAGGTTTGGCAACACTACCTCGA
TTGGGAAGCGGCGTGAGTTGTGTCCAAGGTATCCGAGGGGGAATGGGAGT
TTGTCCCAGATGGACTGCAGGTTTGGCAACACTACCTCGATTGGGAAGCG
GCGTGA
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