Homology
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match:
A0A6H5KSI2_9PHAE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI2_9PHAE)
HSP 1 Score: 967 bits (2499), Expect = 0.000e+0
Identity = 503/599 (83.97%), Postives = 506/599 (84.47%), Query Frame = 3
Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529
I+DHEYDAVVV AGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEF+QFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKD DGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPK+QTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVV DFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY
Sbjct: 52 IIDHEYDAVVVRAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTTYFIEYFATDLLMTPDGECVGVIAVCMEDGSIHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFIQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRSMTIEIKEGRGVGPNADHIHLHLDHLPAELLAERLPGISETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKAQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVKDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 650
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match:
D8LSF2_ECTSI (SDH1, succinate dehydrogenase subunit 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF2_ECTSI)
HSP 1 Score: 900 bits (2326), Expect = 0.000e+0
Identity = 445/448 (99.33%), Postives = 447/448 (99.78%), Query Frame = 3
Query: 186 MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTTIHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529
MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTTIHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKD DGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVV+DF+DVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY
Sbjct: 93 MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTTIHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDGDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVNDFSDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 540
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match:
A0A7S3ZYC3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=3 Tax=cellular organisms TaxID=131567 RepID=A0A7S3ZYC3_9STRA)
HSP 1 Score: 819 bits (2116), Expect = 3.080e-288
Identity = 425/599 (70.95%), Postives = 456/599 (76.13%), Query Frame = 3
Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529
IVDH YD VVVGAGGAGLRAAMG AEAG KTAC+TKLFPTRSHTVAAQGGINAALGNMTED MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTE+GKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT IHR +AKNTVLATGGYGRA+FSCTSAHTCTGDG AMA+RAG+ EDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNS+GERFMER ETA IF+GVDVT++PIPVLPTVHYNMGGIPTNHLGEVI KKD+ GNV DHDA+VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGD V P+ +K+L LD R + G TP A++R +QK MQDHAAVYRTQESLAEGVT++D VV F DV V+DRSLIWNTDL+E +EL NLL NAA TMHAAEARKESRGAHARED PDRLDD WMKH+MTY+D T KT V YRP+H TLDE+E +VPP RVY
Sbjct: 55 IVDHSYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEDGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTTYFLEFFALDLIMDDEGKCVGVVCLEMENGTIHRINAKNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRAGLAAEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSDGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKEKDHCYLHLDHLPAELLAERLPGISETAAIFAGVDVTREPIPVLPTVHYNMGGIPTNHLGEVIHQKKDASGNVVDHDAVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDAVPPLPRDAGQKTLQDLDDVRHSSGPTPTAEIRRDMQKTMQDHAAVYRTQESLAEGVTKIDKVVDSFQDVGVSDRSLIWNTDLVETLELRNLLPNAAATMHAAEARKESRGAHAREDCPDRLDDDWMKHTMTYYDEATRKTSVTYRPIHYETLDEDECAVVPPVARVY 653
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match:
A0A835YUP3_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUP3_9STRA)
HSP 1 Score: 813 bits (2101), Expect = 1.560e-286
Identity = 423/598 (70.74%), Postives = 465/598 (77.76%), Query Frame = 3
Query: 6 VDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529
+DHEYDAVVVGAGGAGLRAAMG AEAG KTACITKLFPTRSHTVAAQGGINAALGNMT D MYDTVKGSDWLGDQDAIHYMC+EAPRAVLELE YGLPFSRTE+GKIYQRAFGGQSL++GKGGQAYRCA AADRTGHAMLHTLYGRSLAF+T+ IHRF AKNTVLATGGYGRA+FSCTSAHTCTGDG AMA+RAG+PL+DPEFVQFHPTGIYGAGCLITEG RGEGG+LRNSEGERFMER E A IFSGVDVTK+PIPVLPTVHYNMGGIPTNH GEV++P+K+++G++ D DAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDKV +APK++T+++L ALD R+A G T A+LRLKLQ+ MQD+AAVYRTQE+LA GV VD VV +F DV VTDRSLIWNTDLIE MEL NLL NAACTMHAAEARKESRGAHAREDF DR D WMKH++ FD GKT ++YRPVH+FTLDE+E K+VPPFKRVY
Sbjct: 21 LDHEYDAVVVGAGGAGLRAAMGLAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTPDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPRAVLELEQYGLPFSRTEDGKIYQRAFGGQSLEFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFNTSYFIEYFAMDLLMADDGSCVGVTAMCMEDGSIHRFKAKNTVLATGGYGRAYFSCTSAHTCTGDGSAMALRAGLPLQDPEFVQFHPTGIYGAGCLITEGSRGEGGMLRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPNKDHIHLHLDHLPAELLAERLPGISELAAIFSGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVVKPRKNANGDI-DQDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKVQDAPKAETDRALGALDDMRYARGQTSTAELRLKLQRVMQDNAAVYRTQETLAHGVVSVDAVVKEFGDVGVTDRSLIWNTDLIETMELRNLLGNAACTMHAAEARKESRGAHAREDFKDRDDVNWMKHTLATFDESKGKTHLDYRPVHAFTLDEKECKVVPPFKRVY 617
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match:
W7TSA7_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TSA7_9STRA)
HSP 1 Score: 794 bits (2050), Expect = 2.460e-278
Identity = 413/599 (68.95%), Postives = 454/599 (75.79%), Query Frame = 3
Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529
++DHEYD VVVGAGGAGLRAAMG AEAG KTAC+TKLFPTRSHTVAAQGGINAALGNMTED MYDTVKGSDWLGDQDAIHYMCREAPRAV ELESYGLPFSRTE+GKIYQRAFGGQSL YGKGGQAYRCACAADRTGHAMLHTLYGRSLAF+TT +HR A NTVLATGGYGRA+FSCTSAHTCTGDG AM +RAG+P+EDPEFVQFHPTGIYGAGCLITEGCRGEGGILRN+EGERFMER ETA IF+GVDVTK+PIPVLPTVHYNMGGIPTNH GEVI PKK +DG++ D D ++PGLFAAGEAACASVHGANRLGANSLLDIVVFGRA ALRIA+I+KPGDKV P ++S+ LDK RFA G+T A +R K+QK MQ+HAAVYRTQ+SLAEG ++D V+S + D+KVTDRSL+WNTDLIE++EL NLLSNAA TM+AAEARKESRGAHAREDF +R D WM H++ FDYDT KT + YRPVH TLDE EVK VPPFKRVY
Sbjct: 50 VIDHEYDVVVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVYELESYGLPFSRTEDGKIYQRAFGGQSLKYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFNTTYFIEYFALDLIMDGDGRCVGITALNMEDGTLHRIHANNTVLATGGYGRAYFSCTSAHTCTGDGNAMVLRAGLPVEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAEGERFMERYAPTAKDLASRDVVSRAMTMEIREGRGVGKEKDHLFLHLDHLPPDLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHFGEVIAPKKKADGSL-DPDHVIPGLFAAGEAACASVHGANRLGANSLLDIVVFGRATALRIADIAKPGDKVPPMPADAGQRSVEDLDKVRFASGSTNTATIRKKMQKTMQEHAAVYRTQDSLAEGKVKIDEVLSTWQDLKVTDRSLMWNTDLIESLELRNLLSNAATTMYAAEARKESRGAHAREDFSERDDANWMMHTIADFDYDTHKTTISYRPVHKHTLDENEVKPVPPFKRVY 647
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match:
A0A6U4KQK6_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KQK6_9STRA)
HSP 1 Score: 784 bits (2025), Expect = 1.050e-274
Identity = 409/599 (68.28%), Postives = 449/599 (74.96%), Query Frame = 3
Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDT------------------------------TIHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529
IVDHE+DAVVVGAGGAGLRAAMG +E G KTAC+TKLFPTRSHTVAAQGGINAALGNMTED MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSL++GKGGQAYRCACAADRTGHAMLHTLYGRSLAFDT T+HRF+AKNTVLATGGYGRA+FSCTSAHTCTGDG AMA+RAGIP +DPEFVQFHPTGIYGAGCL+TEGCRGEGGILRNSEGERFMER ETA IF+GVDVTK+PIPVLPTVHYNMGG+PTNH GEV++P KD + DA+VPGLFAAGE A ASVHGANRLGANSLLDIVVFGRACA RIA+I+KPG+ V P EK++ LDK RFADGA P AD+RL +Q MQ+HAAVYRT + L EGV ++D VV F DVKV+D SL+WNTDLIE EL NLL NAA T+H+AEARKESRGAHA E+FPDR D+ WMKH+++Y D D+GKT V+YRPVH FTLDE E K VPP RVY
Sbjct: 45 IVDHEFDAVVVGAGGAGLRAAMGLSEHGFKTACVTKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLEFGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTAYFIEYFALDLIMDGDGKCVGIMAINMEDGTLHRFNAKNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRAGIPNQDPEFVQFHPTGIYGAGCLMTEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGPKSDHIYLHLDHLPADLLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGVPTNHFGEVLKPTKD------EPDAVVPGLFAAGEVASASVHGANRLGANSLLDIVVFGRACANRIADIAKPGEAVPPLPTKAGEKTIDDLDKVRFADGAIPTADIRLDMQMTMQEHAAVYRTADVLKEGVVKMDEVVKKFKDVKVSDHSLVWNTDLIETWELRNLLPNAATTVHSAEARKESRGAHAHENFPDRDDENWMKHTLSYHDEDSGKTTVDYRPVHYFTLDEAECKTVPPVARVY 637
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match:
A0A7S2Y3D2_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y3D2_9STRA)
HSP 1 Score: 777 bits (2007), Expect = 7.160e-272
Identity = 409/600 (68.17%), Postives = 452/600 (75.33%), Query Frame = 3
Query: 3 IVDH-EYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT-----------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVS-DFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529
IVDH E+DAVVVGAGGAGLRAAMG AEAG TAC+TKLFPTRSHTVAAQGGINAALGNMT+D MYDTVKGSDWLGDQDAIHYMC+EAP AVLELESYGLPFSRTEEGKIYQRAFGGQSL+YGKGGQA+RCACAADRTGHAMLHTLYGRSLAFDTT IHRF NTVLATGG GRA+FSCTSAHTCTGDGGAMA RAG+PLED EFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER ETA IF+GVDVTKDPIPVLPTVHYNMGGIPTNHLGEVI PKK ++G V D DAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I+KPGDK P ++S+A +DK R+A+G+T ADLRL+LQK MQ HAAVYRT + L +G+ VD + +DV+ D+ L+WNT+LIE +EL NL++NA+ + +AE RKESRGAHAREDFPDR D+ WMKH++ YFD TGK+K+EYRPVHSFTLDE+E K VPP +RVY
Sbjct: 45 IVDHTEFDAVVVGAGGAGLRAAMGLAEAGFNTACVTKLFPTRSHTVAAQGGINAALGNMTKDDWRWHMYDTVKGSDWLGDQDAIHYMCKEAPHAVLELESYGLPFSRTEEGKIYQRAFGGQSLEYGKGGQAFRCACAADRTGHAMLHTLYGRSLAFDTTYFIEYFALDLMMSEGQCVGITAMCMEDGSIHRFHTNNTVLATGGAGRAYFSCTSAHTCTGDGGAMATRAGLPLEDQEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTVEIQEGRGVGKNKDHIFLHLDHLPPDLLAERLPGISETASIFAGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVINPKKAANGEVEDWDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAKPGDKKPPLPGDAGDQSIADVDKFRYANGSTSTADLRLELQKSMQTHAAVYRTPDLLKKGLDEVDAIAKRSVDDVRNDDKGLVWNTNLIETLELRNLVANASTVITSAENRKESRGAHAREDFPDRDDEHWMKHTLAYFDEATGKSKLEYRPVHSFTLDEDECKTVPPVQRVY 644
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match:
F0YDU4_AURAN (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YDU4_AURAN)
HSP 1 Score: 776 bits (2003), Expect = 1.680e-271
Identity = 407/599 (67.95%), Postives = 440/599 (73.46%), Query Frame = 3
Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529
+VDH YD VVGAGGAGLRAAMG AEAG KTAC+TKLFPTRSHTVAAQGGINAALGNM+ED MYDTVKGSDWLGDQDAIHYMCREAP+AVLELES+GLPFSRT++GKIYQRAFGGQSLDYGKGGQAYRC AADRTGHAMLHTLYGRSLAFDTT +HR +A NTVLATGGYGRA+FSCTSAHTCTGDG AMA+RAG+ EDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER ETA IF+GVDVTK+PIPVLPTVHYNMGGIPTNHLGEVIR DG+V DHD +VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I++PG V P EK++A +D RF+ G P AD+R +QK MQDHAAVYRT ESLAEG ++ V F D+ VTDRSLIWNTDLIE +EL NLL NAA TM AAEARKESRGAHARED PDRLDD WMKH+M YFD T KT V YRP+H TLD +E +VPP RVY
Sbjct: 31 VVDHSYDVCVVGAGGAGLRAAMGAAEAGFKTACVTKLFPTRSHTVAAQGGINAALGNMSEDDWKWHMYDTVKGSDWLGDQDAIHYMCREAPQAVLELESFGLPFSRTDDGKIYQRAFGGQSLDYGKGGQAYRCCAAADRTGHAMLHTLYGRSLAFDTTYFLEYFALDLIMDDEGSCVGIVAINMEDGTLHRINASNTVLATGGYGRAYFSCTSAHTCTGDGNAMALRAGLAAEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKDADHCYLHLDHLPAELLAERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHLGEVIRQVTGPDGSVIDHDEVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIADIAEPGAPVPPLPADAAEKTIADVDAIRFSSGPRPTADVRKDMQKTMQDHAAVYRTAESLAEGCEKIQKNVEAFADIGVTDRSLIWNTDLIETIELRNLLPNAATTMFAAEARKESRGAHAREDTPDRLDDEWMKHTMCYFDEATNKTTVTYRPIHYETLDADECPVVPPVARVY 629
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match:
A0A7S2RM10_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RM10_9STRA)
HSP 1 Score: 770 bits (1988), Expect = 4.660e-269
Identity = 404/599 (67.45%), Postives = 442/599 (73.79%), Query Frame = 3
Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKDSDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529
+VDH++D VVVGAGGAGLRAAMG AEAG KTACITKLFPTRSHTVAAQGGINAALGNMTED MYDTVKGSDWLGDQDAIHYMCREAP+AVLELES+G+PFSRTEEGKIYQRAFGGQSLD+GKGGQAYRCA AADRTGHAMLHTLYGRSLAFDTT +HR +A NT+LATGGYGRA+FSCTSAHTCTGDG AMA+RAG+ EDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER ETA IF+ VDVTK+PIPVLPTVHYNMGG+PTNH GEVIR KK++DG DHD+IVPGLFAAGE ACASVHGANRLGANSLLDIVVFGRACA RIAEI+KPG V PK + S+A LDK R+A G P A LRL++Q+ MQ++AAVYRT E L+EG ++D VV F V +DRSLIWNTDLIE +EL NLL NA+ TMHAA R ESRGAHARED PDR D+ WMKH+M YFD TG++ VEYRPVH TLDE E K VPP RVY
Sbjct: 43 VVDHQFDVVVVGAGGAGLRAAMGAAEAGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIHYMCREAPKAVLELESFGMPFSRTEEGKIYQRAFGGQSLDFGKGGQAYRCAAAADRTGHAMLHTLYGRSLAFDTTYLIEYFALDLIMDDEGRCVGVLAMCMEDGSLHRINASNTILATGGYGRAYFSCTSAHTCTGDGNAMAMRAGLANEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMERYAPSAKDLASRDVVSRAMTMEIREGRGVGKNNDHIFLHLDHLPADLLAERLPGISETANIFAAVDVTKEPIPVLPTVHYNMGGVPTNHFGEVIRVKKNADGT-EDHDSIVPGLFAAGEVACASVHGANRLGANSLLDIVVFGRACANRIAEIAKPGAPVPPLPKDAGDASIADLDKLRYAKGDVPTASLRLEMQQVMQENAAVYRTAEVLSEGCEKIDAVVDKFQHVGTSDRSLIWNTDLIETLELRNLLGNASTTMHAASQRTESRGAHAREDTPDRDDENWMKHTMAYFDESTGRSTVEYRPVHYHTLDEGECKTVPPVARVY 640
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Match:
A0A7S3JSD7_9STRA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JSD7_9STRA)
HSP 1 Score: 765 bits (1975), Expect = 3.360e-267
Identity = 399/600 (66.50%), Postives = 445/600 (74.17%), Query Frame = 3
Query: 3 IVDHEYDAVVVGAGGAGLRAAMGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTED-----MYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAYRCACAADRTGHAMLHTLYGRSLAFDTT------------------------------IHRFSAKNTVLATGGYGRAFFSCTSAHTCTGDGGAMAIRAGIPLEDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNSEGERFMER-------------------------------------------------------ETAQIFSGVDVTKDPIPVLPTVHYNMGGIPTNHLGEVIRPKKD-SDGNVTDHDAIVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAEISKPGDKVAEAPKSQTEKSLAALDKTRFADGATPVADLRLKLQKEMQDHAAVYRTQESLAEGVTRVDGVVSDFNDVKVTDRSLIWNTDLIEAMELENLLSNAACTMHAAEARKESRGAHAREDFPDRLDDTWMKHSMTYFDYDTGKTKVEYRPVHSFTLDEEEVKMVPPFKRVY 1529
I+DH++D VVGAGGAGLRAAMG AEAG KT C+TKLFPTRSHTVAAQGGINAALGNMT+D YDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQA+RCACAADRTGHAMLHTLYGRSLAFDTT +HR A NTVLATGGYGRA+FSCTSAHTCTGDG AMA+RAG+ +DPEFVQFHPTGIYGAGCLITEGCRGEGGILRN++GERFMER ETAQIF+GVDVTK+PIPVLPTVHYNMGGIPTN+ GEVIR KD + G + DHDA+VPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIA+I++PG + PK+ EKS+A L++ RFA G TP A +R +QK MQDHAAVYRTQESLA+G ++D V + F DV + DRSLIWNTDL+E +EL NLL NAA T+HAAE RKESRGAHAREDF R D WMKH++ Y D ++ + +V+YRP+H +TLDE E VPP RVY
Sbjct: 34 IIDHDFDVCVVGAGGAGLRAAMGSAEAGFKTVCVTKLFPTRSHTVAAQGGINAALGNMTKDDWRWHSYDTVKGSDWLGDQDAIHYMCREAPRAVLELESYGLPFSRTEEGKIYQRAFGGQSLDYGKGGQAFRCACAADRTGHAMLHTLYGRSLAFDTTYLIEYFALDLIMDDDGACVGVLALCMEDGSLHRIHAANTVLATGGYGRAYFSCTSAHTCTGDGNAMALRAGLAAQDPEFVQFHPTGIYGAGCLITEGCRGEGGILRNAQGERFMERYAPSAKDLASRDVVSRAMTLEIQQGRGVGKDKDHIFLHLDHLPPELLAERLPGISETAQIFAGVDVTKEPIPVLPTVHYNMGGIPTNYHGEVIRQIKDEATGEIIDHDAVVPGLFAAGEAACASVHGANRLGANSLLDIVVFGRACALRIAQIAQPGGQKKPLPKNAGEKSIADLNQIRFAQGPTPTAHIRHSMQKVMQDHAAVYRTQESLAQGAQKIDQVCAAFADVGIKDRSLIWNTDLVETLELRNLLPNAATTVHAAEKRKESRGAHAREDFTTRDDQNWMKHTVCYVDPESFQVQVDYRPIHYYTLDENEFATVPPVARVY 633
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig105.353.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 0.00e+0 / Id = 83.97 Expect = 0.00e+0 / Id = 99.33 Expect = 3.08e-288 / Id = 70.95 Expect = 1.56e-286 / Id = 70.74 Expect = 2.46e-278 / Id = 68.95 Expect = 1.05e-274 / Id = 68.28 Expect = 7.16e-272 / Id = 68.17 Expect = 1.68e-271 / Id = 67.95 Expect = 4.66e-269 / Id = 67.45 Expect = 3.36e-267 / Id = 66.50 Sequence A0A6H5KSI2_9PHAE D8LSF2_ECTSI A0A7S3ZYC3_9STRA A0A835YUP3_9STRA W7TSA7_9STRA A0A6U4KQK6_9STRA A0A7S2Y3D2_9STRA F0YDU4_AURAN A0A7S2RM10_9STRA A0A7S3JSD7_9STRA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 1 Stop 1 Cds size 1467 Model size 2644 Exons 11 Ec32 ortholog Ec-21_003470.2 Ec32 ortholog description SDH1, succinate dehydrogenase subunit 1 Hectar predicted targeting category other localisation BRITE ko00000,ko00001,ko00002,ko01000 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. C EC 1.3.5.1 Ec32 ortholog Ec-21_003470.1 EggNOG OGs COG1053@1,KOG2403@2759 EggNOG free text desc. anaerobic respiration GOs GO:0000104,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005749,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006119,GO:0006121,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008177,GO:0009055,GO:0009060,GO:0009061,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009416,GO:0009453,GO:0009605,GO:0009628,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016627,GO:0016635,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0040011,GO:0042330,GO:0042331,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045257,GO:0045273,GO:0045281,GO:0045283,GO:0045333,GO:0046034,GO:0046483,GO:0046956,GO:0050896,GO:0052128,GO:0055086,GO:0055114,GO:0070469,GO:0071704,GO:0072350,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204 KEGG Module M00009,M00011,M00148 KEGG Pathway ko00020,ko00190,ko01100,ko01110,ko01120,ko01130,ko01200,ko04714,ko04932,ko05010,ko05012,ko05016,map00020,map00190,map01100,map01110,map01120,map01130,map01200,map04714,map04932,map05010,map05012,map05016 KEGG Reaction R02164 KEGG ko ko:K00234 KEGG rclass RC00045 Preferred name SDH1 Seed eggNOG ortholog 2880.D8LSF2 Seed ortholog evalue 7.7e-261 Seed ortholog score 906.0 Taxonomic scope Eukaryota
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig105.353.1
>prot_E-siliculosus-1a_F_contig105.353.1 ID=prot_E-siliculosus-1a_F_contig105.353.1|Name=mRNA_E-siliculosus-1a_F_contig105.353.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=489bp
MGCAEAGLKTACITKLFPTRSHTVAAQGGINAALGNMTEDMYDTVKGSDW back to top mRNA from alignment at E-siliculosus-1a_F_contig105:105..11810+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig105.353.1 ID=mRNA_E-siliculosus-1a_F_contig105.353.1|Name=mRNA_E-siliculosus-1a_F_contig105.353.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=11706bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:105..11810+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)AAATAGTCGACCACGAGTACGACGCGGTCGTCGTCGGGGCCGGGGGAGCT
GGTCTCCGCGCCGCG ATGGGGTGTGCCGAGGCGGGCCTAAAGACGGCCTG
CATCACCAAGCTCTTCCCGACGAGGTCGCACACGGTGGCGGCGCAGGGGG
GGATCAACGCGGCCCTGGGGAACATGACCGAGG ACGACTGGCGGTGGGAC
ATTGGTCATTGCGTTGCCGTTACCGGTGCCTGCGGTGGTGTTGGCAAGGG
GGGGGGGGGGGGGGGGGGGGGGGGTGGGTGGGGTGTCGGTGTGCGGGGGG
GTGGTGGGGGGGGGGGGGGTTGGCGGGGGGGGGGGGGGGGGGTGACGAGT
GTGTGTTGGTGTCTCGGTCTTCGTGGGTCTTGTTGGTGGTGGTGGTGTTG
GCACAGGTGTGTGTGTGTGTGTGTTGATGTCTCGGTCTTTGCTGTTGCCT
ATCGTTGCTGCTGCTTTTCCTGTTGTGTTGTGTGGCCGTCGTCGGCATTG
GCGGCGGGTCGGTCGGAGGTCGCAAATCGAGTCGAGAGATTCGAGTAGCG
GGGGCAAGGAAGGAATGCCGCAGCTTCGGACGGAGGGTCAACGATACCGC
CCAGTTCAAAACGTTTTCTGCTTCCACCAATTGTTCACCCATAGGTGGCG
GCTGTGTTGCTTGGATGCCAGCGTTCCGACTGACACCGCTCGGTGGTGAA
AAGGATTTTGTGTTCGACATTTTTTTCTGTTCATGTGTGAGACTTGTTGC
TCTCTTTCTAGACCCTGTTTCTCGTTAGGATGCTGCTTGATCCACGCTCT
GCATTCTTCTGTTTTAAAGGATTACAAGCCTGTGACCACACCTATCTGCC
TCTTGCGATGATGAACGTGTATAGGAAGAAGAATTCCGAAGGCGAGAACG
TTCAATTTTCAACACGAACAGCAACAACCAGTAGCACCAGCTCAATTAGA
CGTATCAGACGTCATCTCGTCCACCTGGCGGGAACATTAGAGATCGCGTC
TATGCAACCCCGTTCTCTCCCCTTCTTGTGTTCTAGCCCCCAACACCAAC
TTGCTTCCTTCGTCTGGTCCCCCGCCGTATCCAAAACAGGTGGCACATGT
ACGACACCGTCAAGGGGTCCGACTGGCTCGGAGACCAGGACGCGATCCAC
TACATGTGCCGAGAGGCGCCGCGGGCGGTGCTGGAGCTGGAGTCGTACGG
GTTGCCGTTCTCTCGTACAGAGGAAGGGAAGATCTACCAGCG GTGCGTGC
GTGCGTGCTTGGGTTAGTGGTTGTGCAAGGTCGCAACCTCGTGTGTGCGT
GTGTGTGTGTGCTTTTTTGGGCTAGCATCGACCGCGCTGACAGGCTGACC
TATGACAAGAGACGTCCGTTTCGTAGCACGATTATTGAAAGATGCGCACT
GCTTTCTAGTCGGTGTGTCTGTCTGTGTTGAACCATCATCGACCGCGCTA
GCCGGCTTACCGATGAAAAGATGTCAGTCTTATAGCGGGGCATGGGTGTC
TGCCGCAACAAGGCCGAACGGCTACAGCGCACACAGCGGCGGCGGCGCGC
GCAGGCTACACGCACCAGAACAGAAAACAACCAAAACATGGTCACCTGCT
CCCGCATCATGGCGGTTAAAGTCGGAGCCATAAAAAATTATTTCAGGGCA
ACCTTGGGCTGTGTATGTTTTATCATTTTTTTTTGCCGTGGCCGCCGTGG
CTGTACCTGCAGACCCTGCGTTATCGGCTGCTCCAATGAAGAGCCACCAT
TGTTTTCGAGGGCCATTGATCCAGGAGGCCGGGGCCCTCTCCGACCCTCA
CCCGCATTGTCTACCTACGCGCCTTGCACACAATCTTTTATCGCACACCA
GTGTTTAAAGCAGCACAGTCTGCGTTGGACGATGGGGGTGGTTTTGAACG
TGCTGCTGCTAGACTTGGTTCTGTTTTGGTTCTCGATGTGTATTGTGCGT
TTGCGCATGCGCCTTTGTGTTTGCGCACGCGCCTTTGTGTTTGCGCACGC
GCCTTTGTGTTTGCGCACGCGCCTTTCGACCCGTGCAAGGGAAAGCCGCC
GCATTTGTGGAGATGCCACGTCCCCCGCATCCGCTCGTCTTGCGCCGTTT
GTCGCTATTACACGAACCGCGCGTGGTCAAAGCACGGGCCATTTTTTATA
TTCGACGTTGACGACCGCAGCATTACCGAGCAAGAACAACGACAATGCAT
CGCCACCACAATATTAAAAATATAAAACAGGGCGTTCGGAGGGCAGTCCC
TCGACTACGGCAAGGGAGGACAGGCGTACCGCTGCGCGTGTGCCGCGGAC
AGGACCGGGCACGCGATGCTGCACACCCTTTACGGGCGGTCGCTGGCCTT
TGATACAAC GTGAGTTGGTGGACGAATGCGCCTGCAGTGTTTGGCTGACG
GGTTCCGGGCGCGTGCGGACCGTGTTTCGTACAACGTGTTAGGCGTTTGG
ACTCGGCTAAGGCAGCCGTGGTGGTTGCATTCGCTTTCGCTGCCCGCCTA
CTGTGCTTGGAAAGCCGAGGCGGGGCGTGAGCACAGTATATTTTCGTGAG
GGGTTGGAAAACCTGCTTTGGTCTCCTCGTCTTCACCCCACCCCCCACTT
CCCCCGCGGTCACCGTCCTTCTCCCCCAAACGAGGTTGCCGCGCGCTCCG
TTGGTCTACTCGTGTTTGATTTCTACGTTAGGACTCTCTTGACATTTTCC
ACGGCAGCCTGACCCCCTCCCGTCATGTTGTCTCCCCCGCCTCCGCTGCG
GACGGCGATTTTACATTTCCCTCTTGTTCTTTTTCGGAGTGCCGTCCGTG
ACAAGCGCCTACCTCAACAGAGCTTTTGATCCCCCCCCCCCCCCCCCCCC
CGCCCCGGGGACTCATGTGTCCGTGCCCCCCCCCCCCCCCCCCCCCNNNN
NNNNNNCCCACTGAGGTGTTTTCCCCCCCCCCCCCCCCCCCCCCCCTGGG
GGTTCTTTTTTCTCGGCCCCCCCCCCCCCCCCCGCATATCCTAACAGCTA
CTTTATCGAATACTTCGCGACGGACCTGCTAATGACCCCAGACGGGGAGT
GCGTGGGTGTAATCGCGGTGTGCATGGAGGTGAGGGGCAGGGCGGAGGAT
TACGGTTGGGGGGAGGGGGAGGGCCGCAAGACGTATCCATCGATGTGGTG
GCAAATGGGGCTGCGCGGTACTACCGTAGCGGGACGAATCTACCGGTTGC
GATACAGCTGCGTTGCGTATGGAGGTGCGAGCAGGGCCAACGACATCCCG
AGGCGTACTCTCTCGCACAATGGCTGTCCGGATGTTGTTGTACCAGTCTA
AGGGATTCCTGTGCTCGTCTTTCTCTCTCTCCCCCCTCCTCCCTCTTCTA
TCTCGGCTGCTGCCTACCCAACGGCACGCCACACAAACGCCAATTCGGCA
CGACACAAACACGGCGGCTTCAAAACGATGTCGGCGGTAGGACGGAAGCA
TCCACCGCTTCAGCGCGAAGAACACGGTGCTCGCTACCGGCGGCTACGGT
CGCGCCTTCTTCTCGTGCACCTCCGCGCACACGTGCACCGGAGACGGGGG
TGCGATGGCCATCAGAGCCGGCATCCCGCTAGAGG GTGAGTAAGAGCCGC
TACGCGATCGTGATGAGGATGATAATGATGGCGATGGTGATGGTGATGGT
GATGATGACAAGCGTGATTGCGTGATGAGATGATGACGGTGGTGGTGGTG
GTGACAAGTTATTATGATGACAAACGTGATTGCGTGATGAGGTTTTGGTC
GTGGTGGTGACAAGTTTCGATGATGGCACACGTGATTGCGTGATGAGATG
GTGGTGGTGATGAACAAACGTGATTGTGGTTGTAGTGCAGGTGTGTGGCG
CGGACGATGCATCTCCGACTAAACGTTGCGGTGGTAGTATTTGCAGTGAG
GTCATGATATGTGGGGGCACGACGATACCCTGTTCATGACGGGAAAAAAT
GTGTGCAAGACGACGAAGATACATACCATGGTACGCCACCGATGTGGTCG
TGATCGTGAGAGTTACACAACACACGGGTCAAGATAAGTTTTTCCGGCCG
CAGCAGCGGCGGCATTCGCGATGAGGGTAAACAAGGATACACCGATGCTC
GAGATACTACGATTCAGCAAATGGGTTTTACACAATGTTGGCAAGTTGAG
AATGAAGAACACCGATAGAGTCAAATGCTTTCGACATGATATTCGGCATG
TTGAGAATGCCAGACACCGATATGAGTAGCTGGTATGGTGAGTCTAAACG
ATTGCGCGTTGGCGTTCTACCCACCGGCGGGCGTGAGTCACCGACGTAGA
CTCGGGCATTGCGTACCCTGTTGTTGCAAGGTGCCGATGGGTGAGCCCCC
GCGGCGTCTGGCGACAATCGGCAACCGCGGATTGTGGCGCGATATGTAGC
TGAACTACAGCTCAAACCAGTTCCGCGATACAGGGCCGAAGTGCAGCGCA
ACAATTTCCCCGTCGTCAGGCCTCTCTTTTTTTGCTCTCTCTCTTCTTGT
CTCTCACCATGTCCTGCCTTTCCTCTGTCGCCCCCGTGTCCCCTGTCGTT
TGCCGTTTGCGTACACACGTGTCGCGCTTGTCCGTACGCGTGTACGCGAC
CCCGCCCCCCCCCCCACAATACAAATAAAAACAAACACACACATCCGAAT
AAAATAGACCCGGAGTTCGTTCAGTTTCACCCCACGGGCATCTACGGGGC
CGGCTGCCTCATCACCGAGGGATGCCGAGGAGAGGGCGGAATCCTCAGGA
ACAGCGAGGGGGAGCGATTCATGGAACG GTGAGCTAAAGCATATACCCAT
GGTATGGTGGTATCGTACGTATGGTGGCGCAACAAGAGATATAAGAAATA
GATTTTGACTAGAAACGCGGAGCTTCCGGACGTGCGTATGTCGTGGGGCT
TTCCTTCTTGTCTCCTGCTGTGTGGCAGCCTTTGTTTTGTTTATTTTGAT
GGTGTAGTCTCTCTTAATAGGCCTTGGTGGGGGCATGCAAATCATGAGTA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCCGGCGCG
GTGACCGCCCTCCCGGCCCGGGCCCGGGCCCCCCCGCCCGGGGGCGGACG
CGGGGGNNNNNNNGGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGATTGCAGATGGGCGGCATCC
TTGTCTTCTCGTGGGAGGGGGTGACGTTCATGAGCAGAAGAGAGGGAGGG
GAAAACATGCCAAGGATGCGTGACGTCCTGATTCTTTCGTTTGGTACGAA
AGGAATGAAGAGGAGGAAACGGAGCGTATTTTTTGTTTTGTGATGCCATG
ACAAGGCGGTTTTTTTTTTGTGTGATGCGGCGCTTCTGTTGGTGAGGTGG
GGGTTTGGAAATAGACGGCGGCCTCGGTTTGCTGGATCAGCGTTGTGCAT
GTTTTTTGTTTACGAAGGTGGGGTGCGGGGGGGGGGGGGGGGGGAGAGGG
ACGTACCCACGCGCCGCAGAGCACGCCCTCCGAGATGCATGCGTGTGGGT
GGTGCCTGTTGGTGGTAGAAATAAAAATAATGGGGAGGAATTTAGGAAAA
TGTTGTTTCGCACGTTTATCCTGCACCAAAACCACTCCTCCAACATTGGG
CAAGACATGCATGCATTCGTACGTACGGATTTCTCCCTCGCCCAGAACTG
ATTTTTAGTCCTTGAGTTGTACTTGGCTCACGCTGTCCGTCCCTGTCCCC
TTCCTGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCTCCCT
ATATTTTTTTTAGCATCTGGACCACCTTCCCGCGGAGCTGTTGGCGGAGC
GCCTTCCGGGGATCAGCGAAACCGCGCAGATTTTCTCCGGCGTGGACGTT
ACGAAGGACCCTATCCCGGTGCTCCCGACGGTGCACTACAACATGGGAGG
CATCCCTACGAACCACCTCGGGGAG GTGAGTGTTTTTTTTTGTTTTGTCT
TAAATATAACAAAACAAACCCATCTCTTCCACAGCTAAGAAGGAGTTTTT
TTTTTGTTTTCCTTGAGGAGTCGGCATGGACGGTACTGCAGGCGGCTGGC
GGATGAACCGAAGGCAGGCGTTCGATATGGGTGGAACGAAAAAGCGCGGG
GCAGCAGTAGGGCGTCAAGTGTTGTGTGTTTTCTTGGTGTAGTTCTTCTC
TTTTTGCTAGCGTTGTCGAGGGAATGAGCTGGCAGAGATCTTGCCGGCTG
TGAAATGTTCGGAGTGTATTAACTACGCGGTTTTTTGTCTTGGATCGTTT
GCATAGCGACGGCCATCTACTTTGCCGTATGAGCATGCGTTATTTGCTGG
GTTCAGCCCGGCCTTGGCGTCGTGAAGAAGCGAGACAGCAGGCACCAATC
AGTGGCGACTTCAAACATGACCTCAACGATTCCAGATGAACAATGAACGG
CCAACCGAACGACACACCGGAGCACGACCACACGGCCACGACACGCAACA
ACAAACAACACATCATCAGCAACAACAACAACAACACACACACACGACAC
ACAACATCAGAAACAGCCTGAAACAGAAGCAACAAAATGGTCAAAGACAA
CAACAGTAACAATAACAACAACAAGACAACCGACAACAAACCGACAACAG
GTGATCAGGCCCAAGAAGGACAGCGACGGCAACGTGACCGACCACGACGC
GATAGTTCCGGGCCTCTTCGCGGCCGGGGAGGCGGCCTGCGCCTCCGTGC
ACGGGGCTAACCGCCTCGGGGCCAACTCCCTCCTCGACATCGTGGTCTTC
GGGAGGGCGTGCGCGCTGCGCATCGCCGAGATCTCCAAGCCGGGAGACAA
G GTGAACATCGTTTTTTTTATTGTGTGAAATATTTTATTGCGTCTATCTG
TGCCTGGAAAAAGCACAAACCGCTGTGGAAATAAAAAGAAGGTGAATTTT
TGCAAGGCTGTTCCATGTCAAGACCCTTTTTTTGGTGTTTTGTCATTGTT
TATTTTTTGGTGTTTTCGTGGAAGGCATACAAATAATTGTTCAATAACAT
TAGTGTTATAACGTTATAACAACAACAGGTGGCCGAGGCCCCCAAGTCCC
AGACGGAGAAGAGCCTGGCGGCGCTCGACAAGACTCGCTTCGCGGACGGC
GCCACCCCCGTGGCCGACCTGAGGCTCAAGCTGCAGAAGGAGATGCAGGA
CCACGCCGCGGTGTACCGGACACAGGAGTCCCTGGCCGAGGGAGTG GTGA
GATAATTTTTTTTTTTCTTGGTTCTTTCACGCTATCACGGTTTTTGACGG
AGCATCGTCTCACCACGAAAAATGAGGGGACTGTCACCATAGTAGCGCAA
CATGGCCCCCTGTGTGTCGAGTTTGGATAGTGTACCCCTTGCTTGTTGTC
GCGTGTTCTTGCACCAGTAGACTGGGGTGCCGTCCGTCCGCTCGGTCGGT
CGCTCGGTCCGCTTGCCCAATGCTTTGGTTCGCCGATGCCGGTATCTACG
GTTTTCGCCTAGTCTTCCTGAACGGAACCGAACCGAACCGAACCGAACCG
AACCGAACCGAACCGAACCGAACCGAACCGAACCGAACCGAACCGAAGCT
GTTTCTACGAACACCGGTTTCTACCGATGTTTTGTGTTTGGAAAAAGTCG
TTTGCACAAAGCTGCTGATACAACACATCTTGTTTTGTCACGGAGTTGGA
TGGCAGACGCCTTGAGAGCGGCACCAAAAGCAGGGCGCAGAGGTGTGTGC
ATGACCTCCCTGCCTCCCTCCCTCCCTCCCGATTTTTCGTGCGTGGTGCG
GCCGTGTATCGATCACCAGACACGAGTGGACGGTGTGGTGAGCGACTTCA
ACGACGTCAAGGTTACCGACAG GTACTGTAGGTGTTGGGTGTTGGGTGTT
CACGTTTTCCGTTGGGTTTTTGAAGTGTTAGTCGTTTGCGTACTGGTGAT
TTGAGTGTTTGCCGTGCCTGTATCACACAAGATTACGCACTTGCAGAAGA
TGACACGTCCGACAGGTCATATTTGGTTTGACTGGTCAACATGACCCCAA
CCTTGAAACTACTCACAGGACATACAACAGGGCGACTTATGATACCACCG
CCCCCACACACAATACACACCCGATGCTTTTTTTTCTTTAGCAGCCAAGT
TTTTAACACGGGGACGTGTTATCTCGTGCAACGTACGGTTTGTCAAGGCG
AATGCAGCTGTTGAGTGTTTGTTCGTGGCCGTCACGCCAGCTGGTGCTGT
TCAACCGACGTCGGTGGTCCGGTGGGCAGGGGGAAGGAAATGAACACGAG
TTGCCGGAGTGCTCAATAGTTTCTTGCGGCAGTACCTAGTGTTGAGTTGT
TTTCGCGAGTTTGCTGCGTTCGAGGCGTTCAAACCCGTGGCAGCACATAC
CGGCCAACGAGGCAGAACGCAGCAACAACGGTCTGAACAACACACAAAGA
TCACCCTTATTGTACCATCTGCACCCCAGTATCGACTGCAGTGTGCGTTG
CCCCCCACCCCCCCCACACACCCGGCATCGTTTGCGGTCCTTTTCTCTGC
ACGCGAGTCGTCAATGGGAAACCATGGTCAACTCGCAACTCTACTGGAAT
ACTGCTGTCACGCCCGCCTGCTCTGCGGCCGTGGGTGGTTTTTTTCGCGT
CGAGGCTCAGCCCACTGCAGTGTGCCCACCGTGCCGCGCTGTGTTGCGTT
GCCCACAACGGCGGCGTTCGTCAACCGCGTCTACGCATGTCCAGAATACA
GAGTTAACAACTTTCATTTTTGCCCTCTCACAATGTACAAGAGGAACGTA
GTCGAGTATGGGCCGCAGCAGCCGTCCCATCCCAGCACAATCCAATCAAA
CCTCGCTTTGGTGTGAAGCACAATACAGATTTTTTCAAGTAGAAATTCAT
CACTCAAAACGCATGCACACGTGCGCCCGCCACTGCTGTTTTCTATTGGT
TTGTTGTATGTAGGTCGCTCATCTGGAACACAGACCTGATCGAGGCGATG
GAGCTGGAGAACCTCCTTTCGAACGCGGCGTGCACCATGCACGCGGCGGA
GGCGAGGAAGGAGTCCCGCGGGGCGCACGCAAGGGAGGACTTCCCCGACC
GGCTGGACGACACTTGGATGAAGCACAGCATGACCTACTTCGACTACGAC
ACCGGGAAGACCAAG GTTGGTTTTGGTTGATTTTGGATGTGGTTTAGTTT
GATTTGGTTGGTTGATTCGGTGGGTCGGGGTCCGGGGGATTGGCTTTAGA
AATCGCCACCACGAGTACAACATAGACATGCAGTCTTACGCTTTTGTTGT
TTTGCCAAGAGTTTGCCACGAGTTCTTGCTGCCGCTCTTCTTGTTGTTGG
GGGGTGGCTTGTTTTTTTGCCGCATCTGTTTGGATTGTGGTTGATTTGGA
TGAAATCGGTCGCGCTTGGAGTGCCAGGCAGACCAAACGAAAGCACCCGG
CCTCACCTGCCGCAAGTTGGAATTTTGTTTTTCGTTGACGAGGTTCCCCG
ACAGGCAGGGCGCAGAGGAAGGTTGGCGAAAGCGAATTTTAGTTATCTTG
TTACGGAACTTCTTCACTTTTTCTTCTCTTTTTTTTGTCGGGGCCAACTT
CCGTTGTTTGCTTTTGAAACACATGACTTCGGTGTTGCATCCGTCCGAAA
AGTGTCTTGGATGTAGCTCGTTGCCTCTTTTTCTTTGTCGGAGATTGTGC
GTGCATCGTGTCCAAGAGCAGTCGCAGGGCACCACAATAGCTTGCGGGAA
ACGGAAGCACTGCATAAGGTTTGTGCGGTAGGATTGAAAACGCACACCAC
AAATGAAGGCGAGAGTCCTTAAAACGCCGAGCCTTGACCTTGCTTTGGGT
ACGAGGAAGATGGCAATTGGAAACAGGTTTGAGTACTGTTGTTGCTTGCC
AGGCGATGAACGCCGTACAAGCTGTGCTTTGCCGTGTTTGCGACTCATTT
TTCCGGAGGGGGCGGGGGGGGGGGGTGAGAGGGCTAGGGGGGTGGGGTGA
AAACGGGGCGGTGTCCAGCTGTACGCGGGCGGATATCTTGTTATTGGTCG
TTTTTCATTTTTCACGTCCGCCGTGCGCTGGTTCAAGGGTGCATGCACAC
CTCTCACCGCTACTGTAGAACACGGAGAAGAACGACAGTCCATGACGTCA
TGCAACGTGGAAACCAAGTGTTTTGCATGTTCGTAGACGTGAAGAAAAAA
ACACACGCAGCCGGCAAGAAAGAGGGGTGTCATCGGCGAAGAATCGACTC
CTGGTGTGCGTCAAAACGAGGCGGTATGTACTTGTCCAGGGCTCGCACGC
TAGACACATCGCAGTCAATTTAGAAGGTCTTCCTTCGAGACTGGGTTGAC
CTGAGGTTTTCGTGCTCGCTCGCTGACTCTTTTCCTCCAACTCCTCCCTT
GCTGCCCGTGCTGTCGCTGCTGCTGCTGCTGCTGCTTCTTTTTTTGCCCC
CATGCCGTCGTTTCGCCACGCGCGCGCGCCGCATCATCTTGTTGCACGCG
ATCCTTATGCCAGGTGGAGTACCGACCTGTGCACAGCTTCACGTTGGACG
AGGAGGAGGTGAAGATGGTTCCCCCCTTCAAGCGAGTGTACTGA ATCCAC
TCAGATGTATCACTCGCCAATATGGGAAATCACATGATGGGGAATCTCAA
GATTGGAAAAAAGAGTGCGTGGGGCGTCGGGGGAGAAAAGCCGAAGTTTT
GATAAGGAAGTCATCGGGATGGGTCGACTCTTTTTCTTCTCCAGTCTTAC
GCGCAAGTTTGTAGTAATAATTGCTGCTGCCCGCTGTGCCTCTACTGCTG
TGATAGGATCTAGACTCTTCTTGTTTGCGATCGGTGGAGCTTCGGTGTTC
CGTGTAGCCGAAGAAAGAGCTTCCTTTTTGTGTTTCCGCTTCTGGCGGCA
CGATGGAAGGGCACGCACAGGGAGCTGCCACGCACGAGGGCAGAAAGGTA
GCGCATGATGGATGATGTTGGAAACCAGGGGCGTGTTTTTCTCGTAGTTT
TGCCGTCTCTTTGCGGATCGCGAATGAATCGCAAGTGTCTGCGTCGTCAA
ACAAACTTGTGAATGATGTGGGCATGGGGGGAGAGCAACGTGATTGTTGT
AGTGCGCAGCCACTGTCAGTCACGAAGTGTAGCGAACGGCTGTCGAGGGG
GGCGGAGGGCTGAAGTGGAGGGAGCTGAGTGGTGGTGCGCTTCATTGGGT
CGTACATCCGGTCGTCCTGTATGAGGAATTTATCTGGTTGACAAACTTGG
TCTGGTCTCCTGTTTTTCCATCGACCATCCGGCCATAAATTGGGGACACG
AATTTTTTTCTTGTGATTCTACTGCCGGAGAGATATTCTCAAGGGCTTCG
GTCACCGAGGGGGCTAGAAAAGGCAAGCTGCACCACAGCGCAGTGTGTAA
ATCTTCGGCGTACATGTTTTCGTTCGTGTTGGTGACCCACCCTCCAGTTT
TGCTACATACATGTCAGGAAAGAGGGGGCACACATACGCGGGAAAATGAG
AAAATTGATTTTCTTCTGATCATCAGAGGAACTCGGAAGGACTGGGCGAT
CGTGCCGCCCGCTTTGAGAAGCAACTGTTGTTTCTCCGAAAGTATAACCA
CATGGTACCGTGTTGACCTCATCGGCGCGGCCGGCACCCCTTTGTATCAG
GAAGTTCCGATCGATGATGGTGGACTGTGAGCTGCTGGAGTTAATGCTGT
TTTCGG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig105:105..11810+
>mRNA_E-siliculosus-1a_F_contig105.353.1 ID=mRNA_E-siliculosus-1a_F_contig105.353.1|Name=mRNA_E-siliculosus-1a_F_contig105.353.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2934bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig105:105..11810+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top