|
|
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10491.352.1 vs. uniprot
Match: D7FYN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN2_ECTSI) HSP 1 Score: 364 bits (934), Expect = 3.230e-113 Identity = 200/221 (90.50%), Postives = 210/221 (95.02%), Query Frame = 1 Query: 1 LSNEALKKRTKGKNQARSQKGKPEITSSSIMEQTRNDTGRSRRRGGGREPLQLTSSEVRLMVEKEAVMVARELAGAPTASLLALVDARKDMDDVAMKAQVTLGALYAQPPLTQDANVAKDGSMMRTIERVPHEEGEAENALPSPGRQMRASADISVEAAGANLSEGALPEPPTAPMVPIVQEESEAAQAPDLAGVTRALNNAPPGRTTGPLVEDGVSKKER 663
LSNEALKKRTK KNQARS++ KPEIT SS+MEQTRNDTGRSRRRGGGREPLQLTSSEVRLMVEKEAV VARELAGAPTASLLALVDARKDMDDV+MKAQ TLG LY+QPPLTQDA+VAKDGSMMR IER+PHEEGEA NALPSPGRQMRASA+ISVEAAGANLSE ALPEPPTAP+VPI Q+ESEAAQA DLAGVTRALNNAPPGRTTGPLVEDGVSKKER
Sbjct: 1170 LSNEALKKRTKEKNQARSRRAKPEITPSSMMEQTRNDTGRSRRRGGGREPLQLTSSEVRLMVEKEAVTVARELAGAPTASLLALVDARKDMDDVSMKAQATLGVLYSQPPLTQDADVAKDGSMMRKIERLPHEEGEALNALPSPGRQMRASANISVEAAGANLSEEALPEPPTAPIVPISQQESEAAQAADLAGVTRALNNAPPGRTTGPLVEDGVSKKER 1390
BLAST of mRNA_E-siliculosus-1a_F_contig10491.352.1 vs. uniprot
Match: D7FPQ8_ECTSI (Kinesin K39 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ8_ECTSI) HSP 1 Score: 223 bits (569), Expect = 1.300e-63 Identity = 146/252 (57.94%), Postives = 166/252 (65.87%), Query Frame = 1 Query: 1 LSNEALKKRTKGKNQARSQKGKPEITSSSIMEQTRNDTGRSRRRGGGREPLQLTSSEVRLMVEKEAVMVARELAGAPTASLLALVDARKDMDDVAMKAQVTLGALYAQPPLTQDANVAKDGSMMRTIERVPHEE---GEAENAL----------------------------PSPGRQMRASADISVEAAGANLSEGALPEPPTAPMVPIVQEESEAAQAPDLAGVTRALNNAPPGRTTGPLVEDGVSKKER 663
LSNEAL+KRTK +NQAR QKGKPE SSS+MEQT ++SEVRLMVEKEA VARELAGAPTASLLALVDARK+MDDVAMKAQ TLG LYAQPPLTQDANVA DG+MM IE++PHEE GE + PSPGRQ AS D++V+A + E ALP PP AP VPI Q+++EAA+A D G +R L NAP RTTGPLVEDGVSKK+R
Sbjct: 1351 LSNEALRKRTKEQNQARIQKGKPESASSSVMEQTXXXXXXXXXXXXXXXXXXXSTSEVRLMVEKEAETVARELAGAPTASLLALVDARKEMDDVAMKAQATLGVLYAQPPLTQDANVATDGTMMLEIEQLPHEENLKGEIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPSPGRQTSASVDMNVDA---GVGEEALPGPPIAPTVPIDQQKAEAAKATDSTG-SRVLKNAPSCRTTGPLVEDGVSKKDR 1598
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 663 |
| Model size | 663 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10491.352.1 >prot_E-siliculosus-1a_F_contig10491.352.1 ID=prot_E-siliculosus-1a_F_contig10491.352.1|Name=mRNA_E-siliculosus-1a_F_contig10491.352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=221bp
LSNEALKKRTKGKNQARSQKGKPEITSSSIMEQTRNDTGRSRRRGGGREP
LQLTSSEVRLMVEKEAVMVARELAGAPTASLLALVDARKDMDDVAMKAQV
TLGALYAQPPLTQDANVAKDGSMMRTIERVPHEEGEAENALPSPGRQMRA
SADISVEAAGANLSEGALPEPPTAPMVPIVQEESEAAQAPDLAGVTRALN
NAPPGRTTGPLVEDGVSKKER back to topmRNA from alignment at E-siliculosus-1a_F_contig10491:887..2246+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10491.352.1 ID=mRNA_E-siliculosus-1a_F_contig10491.352.1|Name=mRNA_E-siliculosus-1a_F_contig10491.352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1360bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10491:887..2246+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGAGCAATGAGGCCCTTAAGAAGCGGACCAAGGGGAAAAACCAGGCTCG
CAGCCAGGTACGTCTACTAGTAAGGCCTGGAGCGTGATCTTGACCTACAC
TGCAGTACACCCATTTTCCGGCGGTGCACAGGAAGCTTCCCGCCTATAAT
ATACAGTCGCGATATGTTCATATTTGTTCTAACCGGTGTCGTCGCCTGAT
GGACGCAAACGCACTGTGTCGCAGAAGGGCAAGCCAGAAATCACGTCGTC
GAGCATAATGGAACAGACGCGAAACGATACAGGGCGCAGCCGCCGACGTG
GCGGTGGGCGAGAGCCGTTGCAGCTGACGTCCTCCGAGGTTCGACTCATG
GTGGAGAAGGAGGCCGTAATGGTTGCACGTGAACTCGCGGGCGCACCCAC
TGCATCGTTGCTCGCGCTCGTTGACGCGCGGAAAGATATGGACGACGTAG
CTATGAAGGCCCAGGTGCGAACGTGGCGTGTCAAGTACATCTGCGTCATG
CTCGAAAAGTAGTAGGACACTACTGGATTTAGGTTAGGCATGTTTTCACG
AGAAGAATCGGTTTTTCCAATGACGCCCATTTGTTGTAAAATGGTGACAG
GTGACGCTCGGCGCGCTGTACGCGCAACCACCGTTGACGCAAGACGCCAA
CGTGGCGAAGGATGGGAGCATGATGCGTACGATCGAGAGGGTTCCCCACG
AGGAGGGAGAGGCCGAAAACGCTTTGCCATCGCCTGGCCGCCAAATGAGG
GCAAGTGCCGACATTAGCGTCGAAGCCGCAGGGGCTAACCTGTCGGAAGG
AGCTCTGCCAGAGCCGCCGACCGCGCCGATGGTGCCGATCGTCCAGGAGG
AGTCCGAGGCCGCCCAAGCTCCCGATCTTGCGGGTGTCACGAGGGCCCTA
AACGTGAGACAGATTCCAAGTCCCAATGTTGTCGCCGATATAATTCGCGT
TAAGAGTTTGTTTCCCCTGAAGGGATGCAGTAGGGCCTAAAATTGTTTTT
TGCGAATTTTTGCCGTGCTGACCGTGTTTCTGGAGCTTCTGTTGCCCGCG
AGTGGTGGGAATTGTCTCGGGGGAGAACTTTTCTATAACTCATTGATGGT
TAGCTCTGTCACCGGTGGGGTATGTTCTTGGCCTTCTCAAAACATTTCCG
TCATCAAGGAATCATTGTACGTTTCATGCCCACCCTACGTCGAAAACGCT
CAATTGTGTGATGGCGAGGTGTCGTCAAAGGGGCACGCACGTGGGAGCTG
ACTTGTGATGTCTGCTGCGTATTCGCCGCGGTGCTTGTTTCGCGCAGAAT
GCGCCACCGGGCAGGACGACAGGGCCGCTGGTAGAGGATGGTGTTTCGAA
GAAAGAGCGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10491:887..2246+ >mRNA_E-siliculosus-1a_F_contig10491.352.1 ID=mRNA_E-siliculosus-1a_F_contig10491.352.1|Name=mRNA_E-siliculosus-1a_F_contig10491.352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1326bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10491:887..2246+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TTGAGCAATGAGGCCCTTAAGAAGCGGACCAAGGGGAAAAACCAGGCTCG
CAGCCAGTTGAGCAATGAGGCCCTTAAGAAGCGGACCAAGGGGAAAAACC
AGGCTCGCAGCCAGAAGGGCAAGCCAGAAATCACGTCGTCGAGCATAATG
GAACAGACGCGAAACGATACAGGGCGCAGCCGCCGACGTGGCGGTGGGCG
AGAGCCGTTGCAGCTGACGTCCTCCGAGGTTCGACTCATGGTGGAGAAGG
AGGCCGTAATGGTTGCACGTGAACTCGCGGGCGCACCCACTGCATCGTTG
CTCGCGCTCGTTGACGCGCGGAAAGATATGGACGACGTAGCTATGAAGGC
CCAGAAGGGCAAGCCAGAAATCACGTCGTCGAGCATAATGGAACAGACGC
GAAACGATACAGGGCGCAGCCGCCGACGTGGCGGTGGGCGAGAGCCGTTG
CAGCTGACGTCCTCCGAGGTTCGACTCATGGTGGAGAAGGAGGCCGTAAT
GGTTGCACGTGAACTCGCGGGCGCACCCACTGCATCGTTGCTCGCGCTCG
TTGACGCGCGGAAAGATATGGACGACGTAGCTATGAAGGCCCAGGTGACG
CTCGGCGCGCTGTACGCGCAACCACCGTTGACGCAAGACGCCAACGTGGC
GAAGGATGGGAGCATGATGCGTACGATCGAGAGGGTTCCCCACGAGGAGG
GAGAGGCCGAAAACGCTTTGCCATCGCCTGGCCGCCAAATGAGGGCAAGT
GCCGACATTAGCGTCGAAGCCGCAGGGGCTAACCTGTCGGAAGGAGCTCT
GCCAGAGCCGCCGACCGCGCCGATGGTGCCGATCGTCCAGGAGGAGTCCG
AGGCCGCCCAAGCTCCCGATCTTGCGGGTGTCACGAGGGCCCTAAACGTG
ACGCTCGGCGCGCTGTACGCGCAACCACCGTTGACGCAAGACGCCAACGT
GGCGAAGGATGGGAGCATGATGCGTACGATCGAGAGGGTTCCCCACGAGG
AGGGAGAGGCCGAAAACGCTTTGCCATCGCCTGGCCGCCAAATGAGGGCA
AGTGCCGACATTAGCGTCGAAGCCGCAGGGGCTAACCTGTCGGAAGGAGC
TCTGCCAGAGCCGCCGACCGCGCCGATGGTGCCGATCGTCCAGGAGGAGT
CCGAGGCCGCCCAAGCTCCCGATCTTGCGGGTGTCACGAGGGCCCTAAAC
AATGCGCCACCGGGCAGGACGACAGGGCCGCTGGTAGAGGATGGTGTTTC
GAAGAAAGAGCGGAATGCGCCACCGGGCAGGACGACAGGGCCGCTGGTAG
AGGATGGTGTTTCGAAGAAAGAGCGG back to top
|