mRNA_E-siliculosus-1a_F_contig10491.352.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10491.352.1 vs. uniprot
Match: D7FYN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN2_ECTSI) HSP 1 Score: 364 bits (934), Expect = 3.230e-113 Identity = 200/221 (90.50%), Postives = 210/221 (95.02%), Query Frame = 1 Query: 1 LSNEALKKRTKGKNQARSQKGKPEITSSSIMEQTRNDTGRSRRRGGGREPLQLTSSEVRLMVEKEAVMVARELAGAPTASLLALVDARKDMDDVAMKAQVTLGALYAQPPLTQDANVAKDGSMMRTIERVPHEEGEAENALPSPGRQMRASADISVEAAGANLSEGALPEPPTAPMVPIVQEESEAAQAPDLAGVTRALNNAPPGRTTGPLVEDGVSKKER 663
LSNEALKKRTK KNQARS++ KPEIT SS+MEQTRNDTGRSRRRGGGREPLQLTSSEVRLMVEKEAV VARELAGAPTASLLALVDARKDMDDV+MKAQ TLG LY+QPPLTQDA+VAKDGSMMR IER+PHEEGEA NALPSPGRQMRASA+ISVEAAGANLSE ALPEPPTAP+VPI Q+ESEAAQA DLAGVTRALNNAPPGRTTGPLVEDGVSKKER
Sbjct: 1170 LSNEALKKRTKEKNQARSRRAKPEITPSSMMEQTRNDTGRSRRRGGGREPLQLTSSEVRLMVEKEAVTVARELAGAPTASLLALVDARKDMDDVSMKAQATLGVLYSQPPLTQDADVAKDGSMMRKIERLPHEEGEALNALPSPGRQMRASANISVEAAGANLSEEALPEPPTAPIVPISQQESEAAQAADLAGVTRALNNAPPGRTTGPLVEDGVSKKER 1390
BLAST of mRNA_E-siliculosus-1a_F_contig10491.352.1 vs. uniprot
Match: D7FPQ8_ECTSI (Kinesin K39 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ8_ECTSI) HSP 1 Score: 223 bits (569), Expect = 1.300e-63 Identity = 146/252 (57.94%), Postives = 166/252 (65.87%), Query Frame = 1 Query: 1 LSNEALKKRTKGKNQARSQKGKPEITSSSIMEQTRNDTGRSRRRGGGREPLQLTSSEVRLMVEKEAVMVARELAGAPTASLLALVDARKDMDDVAMKAQVTLGALYAQPPLTQDANVAKDGSMMRTIERVPHEE---GEAENAL----------------------------PSPGRQMRASADISVEAAGANLSEGALPEPPTAPMVPIVQEESEAAQAPDLAGVTRALNNAPPGRTTGPLVEDGVSKKER 663
LSNEAL+KRTK +NQAR QKGKPE SSS+MEQT ++SEVRLMVEKEA VARELAGAPTASLLALVDARK+MDDVAMKAQ TLG LYAQPPLTQDANVA DG+MM IE++PHEE GE + PSPGRQ AS D++V+A + E ALP PP AP VPI Q+++EAA+A D G +R L NAP RTTGPLVEDGVSKK+R
Sbjct: 1351 LSNEALRKRTKEQNQARIQKGKPESASSSVMEQTXXXXXXXXXXXXXXXXXXXSTSEVRLMVEKEAETVARELAGAPTASLLALVDARKEMDDVAMKAQATLGVLYAQPPLTQDANVATDGTMMLEIEQLPHEENLKGEIQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSPSPGRQTSASVDMNVDA---GVGEEALPGPPIAPTVPIDQQKAEAAKATDSTG-SRVLKNAPSCRTTGPLVEDGVSKKDR 1598 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10491.352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10491.352.1 >prot_E-siliculosus-1a_F_contig10491.352.1 ID=prot_E-siliculosus-1a_F_contig10491.352.1|Name=mRNA_E-siliculosus-1a_F_contig10491.352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=221bp LSNEALKKRTKGKNQARSQKGKPEITSSSIMEQTRNDTGRSRRRGGGREPback to top mRNA from alignment at E-siliculosus-1a_F_contig10491:887..2246+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10491.352.1 ID=mRNA_E-siliculosus-1a_F_contig10491.352.1|Name=mRNA_E-siliculosus-1a_F_contig10491.352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1360bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10491:887..2246+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10491:887..2246+ >mRNA_E-siliculosus-1a_F_contig10491.352.1 ID=mRNA_E-siliculosus-1a_F_contig10491.352.1|Name=mRNA_E-siliculosus-1a_F_contig10491.352.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1326bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10491:887..2246+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |