mRNA_E-siliculosus-1a_M_contig89.16868.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_M_contig89.16868.1
Unique Name	mRNA_E-siliculosus-1a_M_contig89.16868.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)

Homology

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BLAST of mRNA_E-siliculosus-1a_M_contig89.16868.1 vs. uniprot
Match: A0A835YNK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNK7_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 2.070e-6
Identity = 40/106 (37.74%), Postives = 61/106 (57.55%), Query Frame = 1

Query:    1 MSLNGAIVRVGAGAAAVARSALGKPSYGGAALAVTGRRSMTTFQERERGEETVYMRKEDKRLLENLLKKERAHHEAGKDVAKDELMAILGSHKLPSDVVDKLVAWK 318
            M+L  A +RVG     V+ +AL  P+   +  A+ G     +F ERE+GEE V++R+++K LL  L +         K +A  EL  +LG H+LP DV++KL+ WK
Sbjct:    1 MALRLAALRVGQ----VSSAALRTPAIAISTRAMNG---YISFNEREKGEELVHIRQQEKELLLKLRQ--------NKKIANVELKELLGPHQLPDDVLEKLIEWK 91

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_M_contig89.16868.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_M_contig89.16868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YNK7_9STRA	2.070e-6	37.74	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_M_contig89	contig	E-siliculosus-1a_M_contig89:137478..140195 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male	2021-02-24

Properties


Property Name	Value
Start	1
Stop	1
Cds size	330
Model size	1133
Exons	3
Ec32 ortholog	Ec-09_002080.1
Ec32 ortholog description	Hypothetical protein
Hectar predicted targeting category	other localisation

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_M_contig89.16868.1	prot_E-siliculosus-1a_M_contig89.16868.1	Ectocarpus siliculosus Ec864m_EcPH12_78m male	polypeptide	E-siliculosus-1a_M_contig89 137478..139392 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622936359.1700292-CDS-E-siliculosus-1a_M_contig89:137477..137614	1622936359.1700292-CDS-E-siliculosus-1a_M_contig89:137477..137614	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig89 137478..137614 +
1696251041.9128764-CDS-E-siliculosus-1a_M_contig89:137477..137614	1696251041.9128764-CDS-E-siliculosus-1a_M_contig89:137477..137614	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig89 137478..137614 +
1622936359.1924028-CDS-E-siliculosus-1a_M_contig89:138589..138688	1622936359.1924028-CDS-E-siliculosus-1a_M_contig89:138589..138688	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig89 138590..138688 +
1696251041.9262671-CDS-E-siliculosus-1a_M_contig89:138589..138688	1696251041.9262671-CDS-E-siliculosus-1a_M_contig89:138589..138688	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig89 138590..138688 +
1622936359.213085-CDS-E-siliculosus-1a_M_contig89:139298..139392	1622936359.213085-CDS-E-siliculosus-1a_M_contig89:139298..139392	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig89 139299..139392 +
1696251041.9373171-CDS-E-siliculosus-1a_M_contig89:139298..139392	1696251041.9373171-CDS-E-siliculosus-1a_M_contig89:139298..139392	Ectocarpus siliculosus Ec864m_EcPH12_78m male	CDS	E-siliculosus-1a_M_contig89 139299..139392 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622936359.2280529-UTR-E-siliculosus-1a_M_contig89:139392..140195	1622936359.2280529-UTR-E-siliculosus-1a_M_contig89:139392..140195	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig89 139393..140195 +
1696251041.950347-UTR-E-siliculosus-1a_M_contig89:139392..140195	1696251041.950347-UTR-E-siliculosus-1a_M_contig89:139392..140195	Ectocarpus siliculosus Ec864m_EcPH12_78m male	UTR	E-siliculosus-1a_M_contig89 139393..140195 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_M_contig89:137478..140195+
coding sequence from alignment at E-siliculosus-1a_M_contig89:137478..140195+

protein sequence of mRNA_E-siliculosus-1a_M_contig89.16868.1

>prot_E-siliculosus-1a_M_contig89.16868.1 ID=prot_E-siliculosus-1a_M_contig89.16868.1|Name=mRNA_E-siliculosus-1a_M_contig89.16868.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=110bp
MSLNGAIVRVGAGAAAVARSALGKPSYGGAALAVTGRRSMTTFQERERGE
ETVYMRKEDKRLLENLLKKERAHHEAGKDVAKDELMAILGSHKLPSDVVD
KLVAWKSSH*

mRNA from alignment at E-siliculosus-1a_M_contig89:137478..140195+

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_M_contig89.16868.1 ID=mRNA_E-siliculosus-1a_M_contig89.16868.1|Name=mRNA_E-siliculosus-1a_M_contig89.16868.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=2718bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:137478..140195+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCCTGAACGGCGCGATCGTACGGGTTGGTGCGGGAGCGGCGGCGGT
TGCCCGTAGCGCGCTTGGGAAACCCAGCTACGGCGGTGCGGCTCTTGCCG
TCACGGGACGCAGGAGCATGACCACCTTCCAGGAGAGGTATGCATAGCAC
AACTGACGTGGTGACTTGTTTGATGTTTTGGCTTTGTCGTGAACATGGCA
CCGATTTCGATCACACACAAGGATTCCAGCCTGGCGTGGGGCTTGCCTTC
GAATCGCTCCTCCTGCAGTACCAGCGAAGTGAAATGACGCAAGCAGGCCG
TAGCAGAGAAAACACCAGGGCTACGGGCTACACTGACAGAAATGAACACA
GTGCATTTCCGAGATGTTATTTTCACGGGGTAAGCCCATCGCGAATCGCT
GGTCGGGTGGCTCACGTACTACGGCTATGACGGTGAATGACGGTGTGAAC
GACCTCCTCCTCGCGATTTTCCTTTCGCTGTGCCCTCGAGGGGATACATG
AAATCGCGAAAACCCAATAATAAAGAGCGTATTTGTGCGAAAGCGCTACA
TGCGTGCCGTGCAAGTAGCCCTCTTGACAGCAGTGCCTTTGCGAAGCACC
GGATGAGTTTGGGATATTGCCTCAAAGGACGCCCTTAGCGGCTGCCGCGT
TCCGGTGGGTTAAGTTTGTGCTCCCACGGCGCTGGAGTTCGGCACTTGTC
GCTTTTTCTTTGTTTCAAGACCTTCAACAGTGACAACCTTCAGCATGGTA
CAAGAGAGAGAGACCACTATTGGCTGAATGTAGCCTAGACTAATTTGTTT
TGGCAATGATGTCGGAAGCACGATGTCGGATACATCTGTTGTTCAGGGTA
GCATCCCGCGATCTCGAACTTTCCCAGATGGAGATGCATCGCGAGAGCTT
TCTCCCTTCCTCTGCCCTATACATAATTGACAAGCAGCGCGGGAGCCAAA
CGCTCACCTGGCGTTCCAACTCTCCGGAGAAAATATTGACTACCGGGACG
ATATACAAGTATGTGTACCCGAAACTCCATATCACGGCACCCCCAGCTAA
CCAACCCTTGCCATCCCCCCTTCCCCCGTTTTCTCTCCAATTCGTGCCCT
CCCACTCTTCAGGGAGCGCGGGGAAGAGACAGTGTACATGCGCAAAGAGG
ACAAAAGATTGCTCGAGAACTTGCTCAAGAAGGAAAGGGCTCATCACGAG
GCTGGCAAGGAGTAAGTGGACTTTGGCCTGTACTAATGCCGTGTCGTGTC
CCGTGGCTCTGGCTTTTATCGCACCTAGTCGCAACTGCAATTTGATGTTC
ATGGTTTCCCTCCTGGCCGAGGCCTAATCTGGGGCAGGCGCACTTTCCTG
TCGTAAGGCACTAAATACGGCACTCCCATCACCCCAGCCCGAAGGAAATG
CTTCACCTAGCGTGTTCCCCGGGATCCGAGGAGGCTCGACCGGTCGGCCA
GTCTGCACGACCTTCGATTGCGCGGCTCGGCGGCCTCGCACTTGTTGCGC
TTTTGGTGCCCGTTCGTGTGGTAGTCGCAGCATCGGCGTTGCCTGGTTCG
GTGTAGCCGAAGCCCTCCTATCTATGCATACTACCAAGTGCTGGCGGATT
TCCACTCTTTCCGCTCTTCTCCCCGTCGTGTTCGCATTAGTTCTGCTGCA
AGCCTTTTCAGTTGTGTCGTGGCCTGCTTTTCTTTGTCCTGTAGTGTAGC
CCTTGTGGTTGTCGTCTGGCCAGCTGTCTGCAACTGCCTTTTCTGATTGC
TGCCGTTGCACACTTTTCCTGCTGCTTCCGCCGCCGCCGCTGCTGCTGCA
ATTATTTTTTACGTACCACAGCGTCGCCAAAGATGAACTGATGGCCATCC
TCGGTAGCCACAAGCTGCCGAGCGACGTGGTTGACAAGCTCGTCGCCTGG
AAGTCATCGCACTAACCTGGCCGGAAGCATCCCGGTGTGTGCTCGGTGTG
CACAGCGCCATGAAAGGGAAATAGATTGTCTAGCATGTGGAAACGCACAA
AGAGCAAGACTGCGACCACAGGGCATCACGTGGTGCTGCAGGGAGGCCTC
TGCGCTTGTGTTGATGTGGAGGCACGTCTGCGAATGATCATTTGGGGCGG
TTGGGGATTAGCAGAGAGAATGCGGCGAGTATCCTTGAACGAGTGTTCGT
GGGCTTGAGACGTGCGGGTCTGAGCTAGAGGAAGGCAGATGAGGGGGGTA
GAGTTTGAGAAACGTTGGCGGAACTAAGGTACACAAATGTTTTGCGTGTG
CTTCTGTTGCCACTGGTGCGCTGATGGAGCATCGCGGATCCGCACCTACA
CGGAAATTTAAGATCATCTGGTGTCGATTGCTTGTTCATATTCTGTTTGG
CTCGAAGATGTTGAGGCCGGCTGGCCGTGTCCGCAGGGCGCCACTGCCAT
CTCGCCCCCCTCCCAGGCCGGTGTGTAGTAAAACCTCGTTCGTTCTATTT
TCGAATCGTGCTATGTCGCCAGCAGCTGGCTGCCTGATGCTCATCTTTCT
GTGAGTATCACGAGCGTCCCTGTTCCGCTCTGTTTTAGTTCTTCCTCTCT
TGTTCCGCCGGCCGCCTTGCATTGGCACAGGAACCAAATGCACTGGAGGG
CGTGCTGTTTTATCTGAAGGAGCGTTTCATGCTTTAGTGTTGTCATGGCT
CGTTATCGCTCTACATGAGTCACGCGATTTTGTCTGCCGATGTGGAACCG
TTCGGGGTACGTTCGGAC

Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig89:137478..140195+

>mRNA_E-siliculosus-1a_M_contig89.16868.1 ID=mRNA_E-siliculosus-1a_M_contig89.16868.1|Name=mRNA_E-siliculosus-1a_M_contig89.16868.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=660bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig89:137478..140195+ (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
ATGTCCCTGAACGGCGCGATCGTACGGGTTGGTGCGGGAGCGGCGGCGGT
TGCCCGTAGCGCGCTTGGGAAACCCAGCTACGGCGGTGCGGCTCTTGCCG
TCACGGGACGCAGGAGCATGACCACCTTCCAGGAGAGATGTCCCTGAACG
GCGCGATCGTACGGGTTGGTGCGGGAGCGGCGGCGGTTGCCCGTAGCGCG
CTTGGGAAACCCAGCTACGGCGGTGCGGCTCTTGCCGTCACGGGACGCAG
GAGCATGACCACCTTCCAGGAGAGGGAGCGCGGGGAAGAGACAGTGTACA
TGCGCAAAGAGGACAAAAGATTGCTCGAGAACTTGCTCAAGAAGGAAAGG
GCTCATCACGAGGCTGGCAAGGAGGAGCGCGGGGAAGAGACAGTGTACAT
GCGCAAAGAGGACAAAAGATTGCTCGAGAACTTGCTCAAGAAGGAAAGGG
CTCATCACGAGGCTGGCAAGGACGTCGCCAAAGATGAACTGATGGCCATC
CTCGGTAGCCACAAGCTGCCGAGCGACGTGGTTGACAAGCTCGTCGCCTG
GAAGTCATCGCACTAACGTCGCCAAAGATGAACTGATGGCCATCCTCGGT
AGCCACAAGCTGCCGAGCGACGTGGTTGACAAGCTCGTCGCCTGGAAGTC
ATCGCACTAA