mRNA_E-siliculosus-1a_M_contig88.16853.1 (mRNA) Ectocarpus siliculosus Ec864m_EcPH12_78m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_M_contig88.16853.1
Unique NamemRNA_E-siliculosus-1a_M_contig88.16853.1
TypemRNA
OrganismEctocarpus siliculosus Ec864m_EcPH12_78m male (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
Homology
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16853.1 vs. uniprot
Match: D8LKF2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF2_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 5.280e-74
Identity = 121/132 (91.67%), Postives = 127/132 (96.21%), Query Frame = 1 
Query:    1 EPVVVIESSVLPGSNYGDSSSRPFQPLSSVEEDATITTTAASTHDRFEHVGCLELAEEEMVSLGRIKTKAEADIIPGVFGRDDMTPQECASICEGGGQDGFAVTRGDLCTCFAEADAGIFDERKGGVCDAPC 396
            EPVVVIE SVLPGSNYGDSSSRPFQPLSSV+EDAT TTTAASTHDRFEHVGCL+LAEEEMVSLGRI+TKAEADIIPGVFGRDDMTPQ+CA+ICEG GQDGFAVTRG+LCTCFAEADAGIFD  KGGVCDAPC
Sbjct:  359 EPVVVIEPSVLPGSNYGDSSSRPFQPLSSVDEDAT-TTTAASTHDRFEHVGCLKLAEEEMVSLGRIETKAEADIIPGVFGRDDMTPQQCAAICEGVGQDGFAVTRGNLCTCFAEADAGIFDGSKGGVCDAPC 489
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16853.1 vs. uniprot
Match: D8LKF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKF8_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 1.800e-73
Identity = 120/132 (90.91%), Postives = 127/132 (96.21%), Query Frame = 1 
Query:    1 EPVVVIESSVLPGSNYGDSSSRPFQPLSSVEEDATITTTAASTHDRFEHVGCLELAEEEMVSLGRIKTKAEADIIPGVFGRDDMTPQECASICEGGGQDGFAVTRGDLCTCFAEADAGIFDERKGGVCDAPC 396
            EPVVVIE SVLPGSNYGDSSSRPFQPL SV+EDAT TTTAASTHDRFEHVGCL+L EEEM+SLGRI+TKAEADIIPGVFGRDDMTPQ+CA ICEGGGQDGFAVTRGDLCTCFAEADAGIF++RKGGVCDAPC
Sbjct: 1405 EPVVVIEPSVLPGSNYGDSSSRPFQPLLSVDEDAT-TTTAASTHDRFEHVGCLKLTEEEMISLGRIETKAEADIIPGVFGRDDMTPQQCAVICEGGGQDGFAVTRGDLCTCFAEADAGIFEDRKGGVCDAPC 1535
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16853.1 vs. uniprot
Match: A0A6H5KV41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV41_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 1.480e-71
Identity = 116/132 (87.88%), Postives = 122/132 (92.42%), Query Frame = 1 
Query:    1 EPVVVIESSVLPGSNYGDSSSRPFQPLSSVEEDATITTTAASTHDRFEHVGCLELAEEEMVSLGRIKTKAEADIIPGVFGRDDMTPQECASICEGGGQDGFAVTRGDLCTCFAEADAGIFDERKGGVCDAPC 396
            EPVVVIE SVLPGSNYG+SSS PFQ LSSV++DAT TT AASTHDRFEHVGCL+LAEEEMVSLGRIKTKAEAD IPGVFGRDDMTPQECA+ICE  GQDGFAVTRGD CTCFAE DAGIFD+RKGGVCDAPC
Sbjct:    6 EPVVVIEPSVLPGSNYGNSSSLPFQQLSSVDKDAT-TTIAASTHDRFEHVGCLKLAEEEMVSLGRIKTKAEADTIPGVFGRDDMTPQECAAICEDRGQDGFAVTRGDRCTCFAEVDAGIFDDRKGGVCDAPC 136
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16853.1 vs. uniprot
Match: A0A6H5KL41_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL41_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 3.120e-68
Identity = 117/168 (69.64%), Postives = 122/168 (72.62%), Query Frame = 1 
Query:    1 EPVVVIESSVLPGSNY-GDSSSRPFQPLSSVEEDATITTTAASTHD-----------------------------------RFEHVGCLELAEEEMVSLGRIKTKAEADIIPGVFGRDDMTPQECASICEGGGQDGFAVTRGDLCTCFAEADAGIFDERKGGVCDAPC 396
            EPVVVIE SVLPGSNY GDSSS PFQPLSSV++DAT TTTAASTHD                                    FEHVGCL+LAEEEMVSL RIKTKAEADIIPGVFGRDDMTP  CA+ICEG GQDGFAVTRGDLCTCF EAD GIFD+RKGGVCDAPC
Sbjct:    3 EPVVVIEPSVLPGSNYVGDSSSLPFQPLSSVDKDAT-TTTAASTHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHFEHVGCLKLAEEEMVSLRRIKTKAEADIIPGVFGRDDMTPLGCAAICEGRGQDGFAVTRGDLCTCFTEADTGIFDDRKGGVCDAPC 169
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BLAST of mRNA_E-siliculosus-1a_M_contig88.16853.1 vs. uniprot
Match: D8LK84_ECTSI (Beta 1,3 exoglucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK84_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.640e-20
Identity = 54/117 (46.15%), Postives = 65/117 (55.56%), Query Frame = 1 
Query:   55 SSSRPF--QPLSSVEEDATITTTAASTHDRFEHVGCLELAEEEMVSLGRIKTKAEADIIPGVFGRDDMTPQECASICEGGGQDGFAVTRGDLCTCFAEAD-AGIFDERKGGVCDAPC 396
            SSS+P   QP       + +  TAA      EHVGC  L+  E+    RI     A  +  V  + DMTPQECA IC GGG D FAV+RGDL TC +EAD AG    R  GVC++PC
Sbjct:   45 SSSKPIALQPNKDNGAGSPMAITAAP-----EHVGCFTLSRMEVFLRNRITDNPRASTLVRVNSKADMTPQECAGICAGGGHDVFAVSRGDLFTCLSEADSAGFLGGRGNGVCNSPC 156
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_M_contig88.16853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LKF2_ECTSI5.280e-7491.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKF8_ECTSI1.800e-7390.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV41_9PHAE1.480e-7187.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL41_9PHAE3.120e-6869.64WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LK84_ECTSI4.640e-2046.15Beta 1,3 exoglucanase n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_M_contig88contigE-siliculosus-1a_M_contig88:668377..669021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a male vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec864m_EcPH12_78m male2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size396
Model size398
Exons2
Hectar predicted targeting categoryother localisation
BRITEko00000,ko04131
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.ADK
Ec32 orthologEc-16_002740.1
Ec32 ortholog descriptionNucleophile aminohydrolases, N-terminal
EggNOG OGsCOG5147@1,KOG0048@2759
EggNOG free text desc.RNA polymerase II transcription regulator recruiting activity
KEGG koko:K20290
Seed eggNOG ortholog2880.D8LKF8
Seed ortholog evalue1.8e-63
Seed ortholog score248.4
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622936354.2125266-CDS-E-siliculosus-1a_M_contig88:668378..6685131622936354.2125266-CDS-E-siliculosus-1a_M_contig88:668378..668513Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 668379..668513 -
1696251039.8077662-CDS-E-siliculosus-1a_M_contig88:668378..6685131696251039.8077662-CDS-E-siliculosus-1a_M_contig88:668378..668513Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 668379..668513 -
1622936354.230681-CDS-E-siliculosus-1a_M_contig88:668760..6690211622936354.230681-CDS-E-siliculosus-1a_M_contig88:668760..669021Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 668761..669021 -
1696251039.8195896-CDS-E-siliculosus-1a_M_contig88:668760..6690211696251039.8195896-CDS-E-siliculosus-1a_M_contig88:668760..669021Ectocarpus siliculosus Ec864m_EcPH12_78m maleCDSE-siliculosus-1a_M_contig88 668761..669021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_M_contig88.16853.1prot_E-siliculosus-1a_M_contig88.16853.1Ectocarpus siliculosus Ec864m_EcPH12_78m malepolypeptideE-siliculosus-1a_M_contig88 668379..669021 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_M_contig88.16853.1

>prot_E-siliculosus-1a_M_contig88.16853.1 ID=prot_E-siliculosus-1a_M_contig88.16853.1|Name=mRNA_E-siliculosus-1a_M_contig88.16853.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=polypeptide|length=132bp
EPVVVIESSVLPGSNYGDSSSRPFQPLSSVEEDATITTTAASTHDRFEHV
GCLELAEEEMVSLGRIKTKAEADIIPGVFGRDDMTPQECASICEGGGQDG
FAVTRGDLCTCFAEADAGIFDERKGGVCDAPC
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mRNA from alignment at E-siliculosus-1a_M_contig88:668377..669021-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_M_contig88.16853.1 ID=mRNA_E-siliculosus-1a_M_contig88.16853.1|Name=mRNA_E-siliculosus-1a_M_contig88.16853.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=mRNA|length=645bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:668377..669021- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAGCCCGTGGTCGTTATCGAGTCTTCCGTCCTGCCCGGGAGTAACTATGG
CGACAGCAGCTCCCGGCCGTTCCAGCCGCTGTCGAGCGTCGAAGAAGACG
CCACCATCACTACCACCGCCGCCTCCACCCACGACCGTTTCGAGCACGTT
GGCTGCCTGGAGCTGGCGGAGGAAGAGATGGTCTCCCTCGGGAGGATCAA
GACCAAGGCCGAAGCTGACATCATCCCGGGGGTGTTCGGCAGGGATGACA
TGACCCCGCAGGTACGTTGGTGGGCCGATTGACGTAACATCGCGGCTACT
GGTAGCCAACTGCAATATATCCCGTCTAGACATCATGCCATAATTGTGTA
CGTCGCGAATATTCAAGCTGTTCCAACAGTTGTCGGTTATGGCGTGGCTT
TTGATGCAATCAAGACGTTTGCGGTCACTCGGCTCTGCTGTCTATTCACG
CACCACATCTCTGTTGCTCGCTGACTTCCCCTGTTCCTCTTTCCCCTCTC
GCTCTCAGGAATGTGCCTCGATCTGTGAGGGCGGGGGGCAAGATGGCTTC
GCGGTCACCCGAGGTGACCTGTGCACCTGCTTTGCGGAAGCAGACGCCGG
GATCTTCGATGAAAGGAAGGGTGGTGTGTGCGATGCCCCGTGCAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_M_contig88:668377..669021-

>mRNA_E-siliculosus-1a_M_contig88.16853.1 ID=mRNA_E-siliculosus-1a_M_contig88.16853.1|Name=mRNA_E-siliculosus-1a_M_contig88.16853.1|organism=Ectocarpus siliculosus Ec864m_EcPH12_78m male|type=CDS|length=792bp|location=Sequence derived from alignment at E-siliculosus-1a_M_contig88:668377..669021- (Ectocarpus siliculosus Ec864m_EcPH12_78m male)
GAGCCCGTGGTCGTTATCGAGTCTTCCGTCCTGCCCGGGAGTAACTATGG
CGACAGCAGCTCCCGGCCGTTCCAGCCGCTGTCGAGCGTCGAAGAAGACG
CCACCATCACTACCACCGCCGCCTCCACCCACGACCGTTTCGAGCACGTT
GGCTGCCTGGAGCTGGCGGAGGAAGAGATGGTCTCCCTCGGGAGGATCAA
GACCAAGGCCGAAGCTGACATCATCCCGGGGGTGTTCGGCAGGGATGACA
TGACCCCGCAGGAGCCCGTGGTCGTTATCGAGTCTTCCGTCCTGCCCGGG
AGTAACTATGGCGACAGCAGCTCCCGGCCGTTCCAGCCGCTGTCGAGCGT
CGAAGAAGACGCCACCATCACTACCACCGCCGCCTCCACCCACGACCGTT
TCGAGCACGTTGGCTGCCTGGAGCTGGCGGAGGAAGAGATGGTCTCCCTC
GGGAGGATCAAGACCAAGGCCGAAGCTGACATCATCCCGGGGGTGTTCGG
CAGGGATGACATGACCCCGCAGGAATGTGCCTCGATCTGTGAGGGCGGGG
GGCAAGATGGCTTCGCGGTCACCCGAGGTGACCTGTGCACCTGCTTTGCG
GAAGCAGACGCCGGGATCTTCGATGAAAGGAAGGGTGGTGTGTGCGATGC
CCCGTGCGAATGTGCCTCGATCTGTGAGGGCGGGGGGCAAGATGGCTTCG
CGGTCACCCGAGGTGACCTGTGCACCTGCTTTGCGGAAGCAGACGCCGGG
ATCTTCGATGAAAGGAAGGGTGGTGTGTGCGATGCCCCGTGC
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