mRNA_E-siliculosus-1a_F_contig1049.348.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1049.348.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE) HSP 1 Score: 312 bits (800), Expect = 4.000e-101 Identity = 270/287 (94.08%), Postives = 271/287 (94.43%), Query Frame = 3 Query: 201 MGTCLSSPPEEPASIKRLRRSSRGSGGATRAFRNXXXXXXXXXXXXXXXDGAADLWRGGGLILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRYDNVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRGGHRRVAEWIVAN 1061
MGTCLSSP EEPA+IKRLRRSSRGS GATRAFRNXXXXXX DGA DLWRG GLILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWG RPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGC WNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRYDNVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRG HRRVAEWIVAN
Sbjct: 1 MGTCLSSPQEEPAAIKRLRRSSRGSSGATRAFRNXXXXXXGGG------DGATDLWRGSGLILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCAWNGLTFSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDEWTCHMXXXXXXXXXXXXXIQNGCRYDNVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVRGSHRRVAEWIVAN 281
BLAST of mRNA_E-siliculosus-1a_F_contig1049.348.1 vs. uniprot
Match: D7FH77_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH77_ECTSI) HSP 1 Score: 104 bits (260), Expect = 1.280e-21 Identity = 48/93 (51.61%), Postives = 62/93 (66.67%), Query Frame = 3 Query: 393 DNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLT 671
+N D+L ++ FVA++ FLFF PV R WR AWG RP T T D + +QL+ F+ GL R PELCAAIARLG+++LL AR +GC W T
Sbjct: 11 NNPDILGCLISFVADESFLFFGPVCRDWRAAWGNRPTTTRIATSDLTPTQLQRGFDCGLTRTNPELCAAIARLGDVDLLELARDNGCRWGAST 103
BLAST of mRNA_E-siliculosus-1a_F_contig1049.348.1 vs. uniprot
Match: D7FH49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH49_ECTSI) HSP 1 Score: 106 bits (264), Expect = 1.870e-21 Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 3 Query: 396 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVW 659
N+D++ + +FV +KQFLFFA VSR+WR+AWG R VTSWVT ++ QL+YSF GL RD + C AR GNL+LLR A GC W
Sbjct: 22 NMDIVHGLAQFVLDKQFLFFAAVSRSWRDAWGERATVTSWVTPHTTPFQLQYSFACGLARDGVDWCLTTARAGNLDLLRWATEQGCPW 109
BLAST of mRNA_E-siliculosus-1a_F_contig1049.348.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 6.500e-20 Identity = 46/88 (52.27%), Postives = 59/88 (67.05%), Query Frame = 3 Query: 399 VDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 662
VD++ ++ FV + Q+LFFA VSR WR+ WG+RP VT +T D+SV QL SFE GL R +C +A LG L+LLR AR GC WN
Sbjct: 7 VDIVSTVAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRT-AAVCETVAGLGRLDLLRRARAMGCQWN 93
BLAST of mRNA_E-siliculosus-1a_F_contig1049.348.1 vs. uniprot
Match: D7FH78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI) HSP 1 Score: 100 bits (249), Expect = 1.180e-19 Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 3 Query: 396 NVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 662
N ++L + +FV + QFLFFAPV++ WR AW +RP +T+ VT D++ SQL++SFE GLP+++ LCAA+ARLG L LL A G+GC N
Sbjct: 112 NRNILLCLAQFVPDNQFLFFAPVAKGWRAAW-QRPTITAHVTPDTTTSQLQHSFECGLPQNQTGLCAALARLGKLNLLACAVGAGCPMN 199
BLAST of mRNA_E-siliculosus-1a_F_contig1049.348.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI) HSP 1 Score: 99.0 bits (245), Expect = 3.120e-19 Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 3 Query: 399 VDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 662
VD++ ++ FV + Q+LFFA VSR WR+ WG+RP VT +T D+SVSQL SFE GL R +C +A LG L+LLR AR GC WN
Sbjct: 9 VDIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRT-AAVCETVAGLGRLDLLRRARAMGCPWN 95
BLAST of mRNA_E-siliculosus-1a_F_contig1049.348.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 2.250e-18 Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 3 Query: 384 ILADNVDLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWN 662
++ NV LL + FV + Q LFFA VSR WR+ WG+RP VT +T D+SV QL SFE GL R +C +A LG L+LL+ AR GC WN
Sbjct: 20 LVTANVYLLSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRT-AAVCETVAGLGRLDLLQRARAMGCPWN 111
BLAST of mRNA_E-siliculosus-1a_F_contig1049.348.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 2.380e-17 Identity = 45/90 (50.00%), Postives = 63/90 (70.00%), Query Frame = 3 Query: 402 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGRRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGSGCVWNGLT 671
D+ +V FV +QFLFFA V RAW+EAWG+RP T VTED++V+QL +F+ GL ++C ++A+LG L+LL+ AR GC WN +T
Sbjct: 10 DVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLI-ADVCTSVAKLGRLDLLQCARRHGCAWNEVT 98
BLAST of mRNA_E-siliculosus-1a_F_contig1049.348.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 1.150e-12 Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 3 Query: 420 VRFVAEKQFLFFAPVSRAWREAWGRRPAVTSWVTEDSSVSQLRYSFERGLPRDRPELCAAIARLGNLELLRSARGS-GCVWNGLTFSEAA 686
+ FV +Q+LFFA VSR WR+AW RP T VT D+ V QL SFE GL R R +C IA LG L+LL SAR C W+ T S A+
Sbjct: 1 MEFVGGEQYLFFAGVSRTWRDAWEGRPTTTRAVTADTGVPQLSQSFECGLAR-RSTVCQDIAALGRLDLLVSAREEYECPWDEDTCSYAS 89
BLAST of mRNA_E-siliculosus-1a_F_contig1049.348.1 vs. uniprot
Match: A0A6H5K3L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L5_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 2.410e-12 Identity = 41/84 (48.81%), Postives = 51/84 (60.71%), Query Frame = 3 Query: 426 FVAEKQFLFFAPVSRAWREAWGRRPAVTSWVTEDSSVSQLRYSFERGLPRD--RPELCAAIARLGNLELLRSARGSGCVWNGLT 671
FV + Q+LF APV +A+R AWG R VT V D+SV QL Y E GLP + +C A AR G L+LL+ A+GS C W T
Sbjct: 7 FVDQDQYLFIAPVLKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQGSACGWTPAT 90 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1049.348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 14 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1049.348.1 >prot_E-siliculosus-1a_F_contig1049.348.1 ID=prot_E-siliculosus-1a_F_contig1049.348.1|Name=mRNA_E-siliculosus-1a_F_contig1049.348.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=288bp MGTCLSSPPEEPASIKRLRRSSRGSGGATRAFRNNNDNDTDDDGGGGGGDback to top mRNA from alignment at E-siliculosus-1a_F_contig1049:24270..28231+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1049.348.1 ID=mRNA_E-siliculosus-1a_F_contig1049.348.1|Name=mRNA_E-siliculosus-1a_F_contig1049.348.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3962bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1049:24270..28231+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1049:24270..28231+ >mRNA_E-siliculosus-1a_F_contig1049.348.1 ID=mRNA_E-siliculosus-1a_F_contig1049.348.1|Name=mRNA_E-siliculosus-1a_F_contig1049.348.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1728bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1049:24270..28231+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |