mRNA_E-siliculosus-1a_F_contig1047.336.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1047.336.1 vs. uniprot
Match: A0A6H5JRQ4_9PHAE (TPR protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRQ4_9PHAE) HSP 1 Score: 599 bits (1545), Expect = 1.180e-210 Identity = 374/395 (94.68%), Postives = 382/395 (96.71%), Query Frame = 1 Query: 55 MKRVFGAVSGAFRSLVPKATAPAAHHQESVRKAMESLAPPGRRLPSESKTLAMELVAAASEGDKEKELSL-KTPEEMFLAANALHQGKHIPADKETAFALWKKAAEAGHPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEDVGIPQDEERALELFKAAATGGFVPAIHAAASMMEAGKGGEKEDAKAVQWLEVAMEAGDPMAYSTLATWYTAGRAGLELDHKKAFELHLQAANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFERAGALGMPQAMLNLGKMLENGIGVEVDRERALKLYQAALRAEGQLEGGLATTGDDTMAALFEAKREGLLSDTKKGNIAPGGQTVEHGEDQGVRQLGESSSSSSEKASA 1236
MKRVFGAVSGAFRSLVPKATAPAAHHQESVRKAMESLAPPGRRLPSESK L MELVAAASEGDKEKELSL KTPE+MFLAANA HQGKHI ADKETAFALWKKAAEAGHP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEDVGIPQDEERAL LFKAAATGGFVPAIHAAASMMEAGKGGEKEDAKAVQWLEVAMEAGDPMAYSTLATWYTAGRAGLE+DHKKAFELHL+AANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFERAGALGMPQAMLNLGKMLENGIGVEVDRERALKLYQAALRAEGQL+GGLAT GD TMAALFEAK+EGLLSDTKKGN+A G QT EHGEDQGV+Q+GESSSSSSEKASA
Sbjct: 1 MKRVFGAVSGAFRSLVPKATAPAAHHQESVRKAMESLAPPGRRLPSESKPLVMELVAAASEGDKEKELSLLKTPEDMFLAANAFHQGKHIRADKETAFALWKKAAEAGHPKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEDVGIPQDEERALGLFKAAATGGFVPAIHAAASMMEAGKGGEKEDAKAVQWLEVAMEAGDPMAYSTLATWYTAGRAGLEVDHKKAFELHLKAANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFERAGALGMPQAMLNLGKMLENGIGVEVDRERALKLYQAALRAEGQLKGGLATAGDATMAALFEAKQEGLLSDTKKGNVARGSQTDEHGEDQGVKQIGESSSSSSEKASA 395
BLAST of mRNA_E-siliculosus-1a_F_contig1047.336.1 vs. uniprot
Match: A0A1Y1RC54_9PROT (Beta-lactamase n=1 Tax=Campylobacteraceae bacterium 4484_4 TaxID=1970775 RepID=A0A1Y1RC54_9PROT) HSP 1 Score: 83.2 bits (204), Expect = 2.280e-14 Identity = 50/119 (42.02%), Postives = 66/119 (55.46%), Query Frame = 1 Query: 556 DEERALELFKAAATGGFVPAIHAAASMMEAGKGGEKEDAKAVQWLEVAMEAGDPMAYSTLATWYTAGRAGLELDHKKAFELHLQAANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFE 912
D E A ++ A G A + A M + G+G EK++A+A + E A+E P A LA WY G+ GLE + KA+EL L+AA +PRAQY AV G G QN EAA W+E
Sbjct: 17 DYEEAFSVYSELAKEGDPDAQTSLAYMYQQGQGCEKDEARARELYEKAVEKKQPYALFNLAVWYANGKGGLERNPFKAYELFLEAAVAGIPRAQYEVAVMSERGNGTPQNYSEAAYWYE 135
BLAST of mRNA_E-siliculosus-1a_F_contig1047.336.1 vs. uniprot
Match: A0A2G2PHW2_9PROT (Beta-lactamase n=1 Tax=Sulfurimonas sp. TaxID=2022749 RepID=A0A2G2PHW2_9PROT) HSP 1 Score: 80.9 bits (198), Expect = 1.310e-13 Identity = 52/156 (33.33%), Postives = 77/156 (49.36%), Query Frame = 1 Query: 553 QDEERALELFKAAATGGFVPAIHAAASMMEAGKGGEKEDAKAVQWLEVAMEAGDPMAYSTLATWYTAGRAGLELDHKKAFELHLQAANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFERAGALGMPQAMLNLGKMLENGIGVEVDRERALKLYQ 1020
+D A E++ A+ G A + M + G+ E + KA ++ E+ E A LA Y G G+E D KA +LHLQAA +P A Y A+ G G QN EAA W+E G ++ NLG + ++G GV+ DR+R ++
Sbjct: 12 KDFTTAFEIYAKLASEGNADAQTSLGYMYQNGQACEIDKQKAFKYYELGAEQKQAYALFNLAILYMNGLDGVEHDQFKAHDLHLQAAEREVPPAMYEVALMLERGLGCVQNYSEAAFWYEEGAKRGHFESFNNLGVLYKDGHGVDTDRDRCFLCFK 167
BLAST of mRNA_E-siliculosus-1a_F_contig1047.336.1 vs. uniprot
Match: UPI0014932DB4 (sel1 repeat family protein n=2 Tax=Shigella flexneri TaxID=623 RepID=UPI0014932DB4) HSP 1 Score: 63.5 bits (153), Expect = 1.740e-8 Identity = 44/127 (34.65%), Postives = 63/127 (49.61%), Query Frame = 1 Query: 679 VQWLEVAMEAGDPMAYSTLATWYTAGRAGLELDHKKAFELHLQAANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFERAGALGMPQAMLNLGKMLENGIGVEVDRERALKLYQAALRAEGQLEGGL 1059
++WL + E + A LAT Y G+ ++K QAA + AQ YL G + QNLP+A WF++A A G A LG+M +NG GVE + E+A + + AEG +E L
Sbjct: 1 IKWLTKSAEQKNTDAIYFLATAYKGN--GIPAKNEKYLAYLQQAATLGSSNAQAEIGYLYLIGKELPQNLPDAGVWFKKAAAQGNFAAHFYLGRMYQNGDGVERNMEKAR--FHLSNAAEGGIEPAL 123
BLAST of mRNA_E-siliculosus-1a_F_contig1047.336.1 vs. uniprot
Match: UPI000A9997F3 (SEL1-like repeat protein n=1 Tax=Escherichia coli TaxID=562 RepID=UPI000A9997F3) HSP 1 Score: 64.3 bits (155), Expect = 7.220e-8 Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 1 Query: 679 VQWLEVAMEAGDPMAYSTLATWYTAGRAGLELDHKKAFELHLQAANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFERAGALGMPQAMLNLGKMLENGIGVEVDRERALKLYQAALRAEGQLEGGL 1059
++WL + E + A LAT Y G+ +++K QAA + AQ YL G + QNLP+A WF++A A G A LG+M +NG GVE + E+A + + AEG +E L
Sbjct: 110 IKWLTKSAEQKNTDAIYFLATAYKGN--GIPANNEKYLAYLQQAATLGSSNAQAEIGYLYLIGKELPQNLPDAGVWFKKAAAQGNFAAHFYLGRMYQNGDGVERNMEKAR--FHLSNAAEGGIEPAL 232
BLAST of mRNA_E-siliculosus-1a_F_contig1047.336.1 vs. uniprot
Match: UPI001CFB3400 (DAP3-binding cell death enhancer 1-like n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFB3400) HSP 1 Score: 64.7 bits (156), Expect = 1.070e-7 Identity = 57/171 (33.33%), Postives = 86/171 (50.29%), Query Frame = 1 Query: 556 DEERALELFKAAATGGFVPAIHAAASMMEAGKGGEKEDAKAVQWLEVAMEAGDPMAYSTLATWYTAGR-AGLELDHKKAFELHLQAANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFERAGALGMPQAMLNLGKMLENGIGVEVDRERALKLY-QAA----LRAEGQLE 1050
++ AL F+ AA G+ A++ A E G+G K+ KA + A EAG +A A + + + L D KA L QAA +P AQ V Y++ QN +A + + A G ++ +LG ENG+GV+ + ++ALKLY QAA L+A+ LE
Sbjct: 33 EDNTALSCFQVAADYGYCKAVYNAGVCYELGRGVVKDMIKAAAYYRCAAEAGHNLAQYRYAKYLLSPKHEKLAEDVYKAVTLLQQAAKAGLPEAQAYLGVFYMKLP--YQNDVKAVQYLQLAARSGDTSSLYHLGLCYENGLGVQQNLQKALKLYYQAASSGCLKAQEALE 201
BLAST of mRNA_E-siliculosus-1a_F_contig1047.336.1 vs. uniprot
Match: A0A397TFK6_9GLOM (Kinase-like domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397TFK6_9GLOM) HSP 1 Score: 65.5 bits (158), Expect = 1.410e-7 Identity = 45/147 (30.61%), Postives = 77/147 (52.38%), Query Frame = 1 Query: 541 VGIPQDEERALELFKAAATGGFVPAIHAAASMMEAGKGGEKEDAKAVQWLEVAMEAGDPMAYSTLATWYTAGRAGLELDHKKAFELHLQAANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFERAGALGMPQAMLNLGKMLENGIG 981
+G +D+ AL + A+ G A + ++ G K+ KA Q +++ + G + L Y+ G G +D K+AF L+L+AANMN AQYN AV + +G GI++N E+ W++++ G +A + ++L IG
Sbjct: 343 IGTKEDKRVALHTYNQASRNGHAIASYYMGNIF----GVNKDYNKAFQCYDLSAKGGFTFGINMLGYCYSKG-IGTFVDQKEAFYLYLRAANMNNMVAQYNVAVCFDDGIGIDKNPKESKEWYKKSADNGYDKARKTMDELLGKEIG 484
BLAST of mRNA_E-siliculosus-1a_F_contig1047.336.1 vs. uniprot
Match: UPI001493A3DE (SEL1-like repeat protein n=1 Tax=Shigella flexneri TaxID=623 RepID=UPI001493A3DE) HSP 1 Score: 64.3 bits (155), Expect = 3.700e-7 Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 1 Query: 679 VQWLEVAMEAGDPMAYSTLATWYTAGRAGLELDHKKAFELHLQAANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFERAGALGMPQAMLNLGKMLENGIGVEVDRERALKLYQAALRAEGQLEGGL 1059
++WL + E + A LAT Y G+ +++K QAA + AQ YL G + QNLP+A WF++A A G A LG+M +NG GVE + E+A + + AEG +E L
Sbjct: 434 IKWLTKSAEQKNTDAIYFLATAYKGN--GIPANNEKYLAYLQQAATLGSSNAQAEIGYLYLIGKELPQNLPDAGVWFKKAAAQGNFAAHFYLGRMYQNGDGVERNMEKAR--FHLSNAAEGGIEPAL 556
BLAST of mRNA_E-siliculosus-1a_F_contig1047.336.1 vs. uniprot
Match: A0A658XXT5_SHIFL (Beta-lactamase hcpC n=136 Tax=Enterobacterales TaxID=91347 RepID=A0A658XXT5_SHIFL) HSP 1 Score: 64.3 bits (155), Expect = 4.300e-7 Identity = 44/127 (34.65%), Postives = 64/127 (50.39%), Query Frame = 1 Query: 679 VQWLEVAMEAGDPMAYSTLATWYTAGRAGLELDHKKAFELHLQAANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFERAGALGMPQAMLNLGKMLENGIGVEVDRERALKLYQAALRAEGQLEGGL 1059
++WL + E + A LAT Y G+ +++K QAA + AQ YL G + QNLP+A WF++A A G A LG+M +NG GVE + E+A + + AEG +E L
Sbjct: 584 IKWLTKSAEQKNTDAIYFLATAYKGN--GIPTNNEKYLAYLQQAATLGSSNAQAEIGYLYLIGKELPQNLPDAGVWFKKAAAQGNFAAHFYLGRMYQNGDGVERNMEKAR--FHLSNAAEGGIEPAL 706
BLAST of mRNA_E-siliculosus-1a_F_contig1047.336.1 vs. uniprot
Match: UPI0015FAACE3 (SEL1-like repeat protein n=2 Tax=Escherichia coli TaxID=562 RepID=UPI0015FAACE3) HSP 1 Score: 61.6 bits (148), Expect = 5.610e-7 Identity = 43/127 (33.86%), Postives = 63/127 (49.61%), Query Frame = 1 Query: 679 VQWLEVAMEAGDPMAYSTLATWYTAGRAGLELDHKKAFELHLQAANMNMPRAQYNTAVHYLEGTGIEQNLPEAAAWFERAGALGMPQAMLNLGKMLENGIGVEVDRERALKLYQAALRAEGQLEGGL 1059
++WL + E + A LAT Y G+ +++K QAA + AQ YL G + QNLP+A WF++A A A LG+M +NG GVE + E+A + + AEG +E L
Sbjct: 107 IKWLTKSAEQKNTDAIYFLATAYKGN--GIPANNEKYLAYLQQAATLGSSNAQAEIGYLYLIGKELPQNLPDAGVWFKKAAAQDNFAAHFYLGRMYQNGDGVERNMEKAR--FHLSNAAEGGIEPAL 229 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1047.336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 15 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1047.336.1 >prot_E-siliculosus-1a_F_contig1047.336.1 ID=prot_E-siliculosus-1a_F_contig1047.336.1|Name=mRNA_E-siliculosus-1a_F_contig1047.336.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=395bp MKRVFGAVSGAFRSLVPKATAPAAHHQESVRKAMESLAPPGRRLPSESKTback to top mRNA from alignment at E-siliculosus-1a_F_contig1047:1005..5590- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1047.336.1 ID=mRNA_E-siliculosus-1a_F_contig1047.336.1|Name=mRNA_E-siliculosus-1a_F_contig1047.336.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4586bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:1005..5590- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1047:1005..5590- >mRNA_E-siliculosus-1a_F_contig1047.336.1 ID=mRNA_E-siliculosus-1a_F_contig1047.336.1|Name=mRNA_E-siliculosus-1a_F_contig1047.336.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2370bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1047:1005..5590- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |