prot_E-siliculosus-1a_F_contig10460.335.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig10460.335.1
Unique Nameprot_E-siliculosus-1a_F_contig10460.335.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length127
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 3.290e-58
Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 0
Query:   17 SGLNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 119
            SGLNPARNAATYFVSRFLSRCAGK+ESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKD KGGSSGARDQQYCLMAMDVLGRVAGGLADITR
Sbjct:  810 SGLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDLKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 912          
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 8.280e-25
Identity = 62/103 (60.19%), Postives = 63/103 (61.17%), Query Frame = 0
Query:   17 SGLNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 119
            SGLNPARNAATYFVSRFLSRC                                        GALVKDLKDQKGG+SGARDQQYCLMAMDVLGRVAGGLADITR
Sbjct:  893 SGLNPARNAATYFVSRFLSRC----------------------------------------GALVKDLKDQKGGTSGARDQQYCLMAMDVLGRVAGGLADITR 955          
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A835Z2V2_9STRA (Sister chromatid cohesion protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V2_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 9.560e-14
Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 0
Query:   17 SGLNPARNAATYFVSRFLSRCAGK-DESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 119
            +GL  A   + +F +RF++RC  K D+   F+ LL N VDDL++ +   EWPAAELLLHA C AL+ DL            Q    MA+D+L +VA  +A + R
Sbjct:  416 AGLAGASAMSRFFAARFIARCQKKEDDGQEFRRLLVNLVDDLVSALPFAEWPAAELLLHAFCKALITDLPKMA--------QHAVFMALDILTKVATAVAALQR 511          
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.160e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 0
Query:   17 SGLNPARNAATYFVSRFLSRCAGKDE---SANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDL------KDQKGGSSGARDQQYCLMAMDVLGRVAGGL 114
            SGL   ++   +F S+ + RC+ K E   ++ F+P+L+N VDDLLA  LLPE+PAAE+LL +LC  L  DL         K  +S + +  Y   AMD +G++   +
Sbjct:  350 SGLKGCQSVCDFFTSQMIQRCSRKGEEGGASEFRPVLSNLVDDLLAVQLLPEYPAAEMLLLSLCRRLSHDLLRSSSASVNKNTTSTSAETTYLSTAMDTMGKICSSI 456          
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A0D2X1A1_CAPO3 (Sister chromatid cohesion protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X1A1_CAPO3)

HSP 1 Score: 69.7 bits (169), Expect = 2.550e-11
Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 0
Query:   25 AATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSG--ARDQQYCLMAMDVLGRVA 111
            AA  FV+ FL RC  K +  +++P+L +   DLL  + LPEWPAAE++LH LC AL+  +      +    A D    L+A++++G VA
Sbjct:  589 AAQEFVTTFLKRCTNKKDENDYKPVLESFAKDLLTVLHLPEWPAAEVVLHTLCAALIPIVNGAISSTDATKASDSALRLLAIEIVGMVA 677          
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A6G0X3I6_9STRA (Sister chromatid cohesion protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3I6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 8.760e-11
Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 0
Query:   16 QSGLNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADIT 118
            Q  L+  R  A   V  F+ +C  K+E  +F+    N VDDLLA +L PEWPA E++L A+ G L   +  QK   S   + Q  L+A+ +LG++   +  ++
Sbjct:  448 QISLDGVRETAKSIVHCFVQKCMKKEEDHDFRQKFENFVDDLLAMMLFPEWPAVEVILMAVSGGLTNLMVQQK---SSKLESQSSLLALHLLGKICASIRQVS 547          
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A485K4A2_9STRA (Sister chromatid cohesion protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4A2_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 8.760e-11
Identity = 34/100 (34.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:   19 LNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADIT 118
            L+  R+ +   V  F+ RC  K+E  +++ +  N VDDLLA +L PEWPA EL+L A+   L   +  QK   +   + Q  L+A+++LG++   +  I+
Sbjct:  466 LDSVRDTSRSIVHSFMQRCMKKEEENDYRQVFENFVDDLLAMLLSPEWPAVELILEAMTAGLTNLMSQQK---TSKLESQSSLLALNLLGKICATIRQIS 562          
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A1E7FX63_9STRA (Sister chromatid cohesion protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX63_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.200e-10
Identity = 35/115 (30.43%), Postives = 66/115 (57.39%), Query Frame = 0
Query:   17 SGLNPARNAATYFVSRFLSRCAGKDE---SANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDL---KDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITRYSSRPA 125
            SGL   +  + +FV+  L RC+ K E   ++ F+P+L+N ++DLL  +L+PE+PAAE+++ ++  ++ +D+      KGG        Y     D LG+++  +A I +++   A
Sbjct:  346 SGLGACQAVSDFFVNHLLRRCSKKGEDGGASEFRPILSNLIEDLLLVLLVPEYPAAEMIVLSIANSMYRDIIQMTSSKGGKESITTT-YFNTIFDALGKISAAVARINKWNEEHA 459          
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A7F5R8R5_AGRPL (nipped-B-like protein A n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8R5_AGRPL)

HSP 1 Score: 66.6 bits (161), Expect = 3.000e-10
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 0
Query:   22 ARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGL 114
            A   A  F++ FLS+C  K E  +++PL  N V DLLATV  PEWPA ELLL  L   LVK+  ++        D    + ++D LG VA  L
Sbjct:  769 ATTTAGTFLAVFLSKCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLLGKMLVKNFSNK------GTDMSLRVASLDYLGVVAARL 855          
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A7F5R8P1_AGRPL (Nipped-B protein n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8P1_AGRPL)

HSP 1 Score: 66.6 bits (161), Expect = 3.060e-10
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 0
Query:   22 ARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGL 114
            A   A  F++ FLS+C  K E  +++PL  N V DLLATV  PEWPA ELLL  L   LVK+  ++        D    + ++D LG VA  L
Sbjct:  769 ATTTAGTFLAVFLSKCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLLGKMLVKNFSNK------GTDMSLRVASLDYLGVVAARL 855          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSV8_ECTSI3.290e-5898.06Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A6H5JLU6_9PHAE8.280e-2560.19PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z2V2_9STRA9.560e-1441.35Sister chromatid cohesion protein n=1 Tax=Tribonem... [more]
A0A7S4RR27_9STRA6.160e-1338.32Sister chromatid cohesion protein n=6 Tax=Ditylum ... [more]
A0A0D2X1A1_CAPO32.550e-1139.33Sister chromatid cohesion protein n=2 Tax=Capsaspo... [more]
A0A6G0X3I6_9STRA8.760e-1134.95Sister chromatid cohesion protein n=1 Tax=Aphanomy... [more]
A0A485K4A2_9STRA8.760e-1134.00Sister chromatid cohesion protein n=1 Tax=Aphanomy... [more]
A0A1E7FX63_9STRA1.200e-1030.43Sister chromatid cohesion protein n=1 Tax=Fragilar... [more]
A0A7F5R8R5_AGRPL3.000e-1041.94nipped-B-like protein A n=1 Tax=Agrilus planipenni... [more]
A0A7F5R8P1_AGRPL3.060e-1041.94Nipped-B protein n=1 Tax=Agrilus planipennis TaxID... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR033031SCC2/Nipped-B familyPANTHERPTHR21704NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATEDcoord: 8..119
NoneNo IPR availablePANTHERPTHR21704:SF18NIPPED-B-LIKE PROTEINcoord: 8..119

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10460contigE-siliculosus-1a_F_contig10460:266..1412 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10460.335.1mRNA_E-siliculosus-1a_F_contig10460.335.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig10460 266..1412 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig10460.335.1 ID=prot_E-siliculosus-1a_F_contig10460.335.1|Name=mRNA_E-siliculosus-1a_F_contig10460.335.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=127bp
RRRQQLQKKRQQEQQQSGLNPARNAATYFVSRFLSRCAGKDESANFQPLL
ANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYC
LMAMDVLGRVAGGLADITRYSSRPAF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR033031SCC2/Nipped-B