mRNA_E-siliculosus-1a_F_contig10460.335.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI) HSP 1 Score: 203 bits (517), Expect = 3.290e-58 Identity = 101/103 (98.06%), Postives = 102/103 (99.03%), Query Frame = 1 Query: 49 SGLNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 357 SGLNPARNAATYFVSRFLSRCAGK+ESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKD KGGSSGARDQQYCLMAMDVLGRVAGGLADITR Sbjct: 810 SGLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDLKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 912
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE) HSP 1 Score: 108 bits (269), Expect = 8.280e-25 Identity = 62/103 (60.19%), Postives = 63/103 (61.17%), Query Frame = 1 Query: 49 SGLNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 357 SGLNPARNAATYFVSRFLSRC GALVKDLKDQKGG+SGARDQQYCLMAMDVLGRVAGGLADITR Sbjct: 893 SGLNPARNAATYFVSRFLSRC----------------------------------------GALVKDLKDQKGGTSGARDQQYCLMAMDVLGRVAGGLADITR 955
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A835Z2V2_9STRA (Sister chromatid cohesion protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V2_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 9.560e-14 Identity = 43/104 (41.35%), Postives = 60/104 (57.69%), Query Frame = 1 Query: 49 SGLNPARNAATYFVSRFLSRCAGK-DESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITR 357 +GL A + +F +RF++RC K D+ F+ LL N VDDL++ + EWPAAELLLHA C AL+ DL Q MA+D+L +VA +A + R Sbjct: 416 AGLAGASAMSRFFAARFIARCQKKEDDGQEFRRLLVNLVDDLVSALPFAEWPAAELLLHAFCKALITDLPKMA--------QHAVFMALDILTKVATAVAALQR 511
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 6.160e-13 Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 1 Query: 49 SGLNPARNAATYFVSRFLSRCAGKDE---SANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDL------KDQKGGSSGARDQQYCLMAMDVLGRVAGGL 342 SGL ++ +F S+ + RC+ K E ++ F+P+L+N VDDLLA LLPE+PAAE+LL +LC L DL K +S + + Y AMD +G++ + Sbjct: 350 SGLKGCQSVCDFFTSQMIQRCSRKGEEGGASEFRPVLSNLVDDLLAVQLLPEYPAAEMLLLSLCRRLSHDLLRSSSASVNKNTTSTSAETTYLSTAMDTMGKICSSI 456
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A0D2X1A1_CAPO3 (Sister chromatid cohesion protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X1A1_CAPO3) HSP 1 Score: 69.7 bits (169), Expect = 2.550e-11 Identity = 35/89 (39.33%), Postives = 53/89 (59.55%), Query Frame = 1 Query: 73 AATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSG--ARDQQYCLMAMDVLGRVA 333 AA FV+ FL RC K + +++P+L + DLL + LPEWPAAE++LH LC AL+ + + A D L+A++++G VA Sbjct: 589 AAQEFVTTFLKRCTNKKDENDYKPVLESFAKDLLTVLHLPEWPAAEVVLHTLCAALIPIVNGAISSTDATKASDSALRLLAIEIVGMVA 677
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A6G0X3I6_9STRA (Sister chromatid cohesion protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3I6_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 8.760e-11 Identity = 36/103 (34.95%), Postives = 56/103 (54.37%), Query Frame = 1 Query: 46 QSGLNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADIT 354 Q L+ R A V F+ +C K+E +F+ N VDDLLA +L PEWPA E++L A+ G L + QK S + Q L+A+ +LG++ + ++ Sbjct: 448 QISLDGVRETAKSIVHCFVQKCMKKEEDHDFRQKFENFVDDLLAMMLFPEWPAVEVILMAVSGGLTNLMVQQK---SSKLESQSSLLALHLLGKICASIRQVS 547
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A485K4A2_9STRA (Sister chromatid cohesion protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4A2_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 8.760e-11 Identity = 34/100 (34.00%), Postives = 57/100 (57.00%), Query Frame = 1 Query: 55 LNPARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLADIT 354 L+ R+ + V F+ RC K+E +++ + N VDDLLA +L PEWPA EL+L A+ L + QK + + Q L+A+++LG++ + I+ Sbjct: 466 LDSVRDTSRSIVHSFMQRCMKKEEENDYRQVFENFVDDLLAMLLSPEWPAVELILEAMTAGLTNLMSQQK---TSKLESQSSLLALNLLGKICATIRQIS 562
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A1E7FX63_9STRA (Sister chromatid cohesion protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FX63_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 1.200e-10 Identity = 35/115 (30.43%), Postives = 66/115 (57.39%), Query Frame = 1 Query: 49 SGLNPARNAATYFVSRFLSRCAGKDE---SANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDL---KDQKGGSSGARDQQYCLMAMDVLGRVAGGLADITRYSSRPA 375 SGL + + +FV+ L RC+ K E ++ F+P+L+N ++DLL +L+PE+PAAE+++ ++ ++ +D+ KGG Y D LG+++ +A I +++ A Sbjct: 346 SGLGACQAVSDFFVNHLLRRCSKKGEDGGASEFRPILSNLIEDLLLVLLVPEYPAAEMIVLSIANSMYRDIIQMTSSKGGKESITTT-YFNTIFDALGKISAAVARINKWNEEHA 459
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A7F5R8R5_AGRPL (nipped-B-like protein A n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8R5_AGRPL) HSP 1 Score: 66.6 bits (161), Expect = 3.000e-10 Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1 Query: 64 ARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGL 342 A A F++ FLS+C K E +++PL N V DLLATV PEWPA ELLL L LVK+ ++ D + ++D LG VA L Sbjct: 769 ATTTAGTFLAVFLSKCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLLGKMLVKNFSNK------GTDMSLRVASLDYLGVVAARL 855
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Match: A0A7F5R8P1_AGRPL (Nipped-B protein n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8P1_AGRPL) HSP 1 Score: 66.6 bits (161), Expect = 3.060e-10 Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 1 Query: 64 ARNAATYFVSRFLSRCAGKDESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGL 342 A A F++ FLS+C K E +++PL N V DLLATV PEWPA ELLL L LVK+ ++ D + ++D LG VA L Sbjct: 769 ATTTAGTFLAVFLSKCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLLGKMLVKNFSNK------GTDMSLRVASLDYLGVVAARL 855 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10460.335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10460.335.1 >prot_E-siliculosus-1a_F_contig10460.335.1 ID=prot_E-siliculosus-1a_F_contig10460.335.1|Name=mRNA_E-siliculosus-1a_F_contig10460.335.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=127bp RRRQQLQKKRQQEQQQSGLNPARNAATYFVSRFLSRCAGKDESANFQPLLback to top mRNA from alignment at E-siliculosus-1a_F_contig10460:266..1412- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10460.335.1 ID=mRNA_E-siliculosus-1a_F_contig10460.335.1|Name=mRNA_E-siliculosus-1a_F_contig10460.335.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1147bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10460:266..1412- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10460:266..1412- >mRNA_E-siliculosus-1a_F_contig10460.335.1 ID=mRNA_E-siliculosus-1a_F_contig10460.335.1|Name=mRNA_E-siliculosus-1a_F_contig10460.335.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10460:266..1412- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |