mRNA_E-siliculosus-1a_F_contig1046.334.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-siliculosus-1a_F_contig1046.334.1
Unique Name	mRNA_E-siliculosus-1a_F_contig1046.334.1
Type	mRNA
Organism	Ectocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig1046.334.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig1046.334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 0

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-siliculosus-1a_F_contig1046	contig	E-siliculosus-1a_F_contig1046:32210..32340 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female	2021-02-24

Properties


Property Name	Value
Start	0
Stop	1
Cds size	117
Model size	117
Exons	2
Ec32 ortholog	Ec-10_001790.1
Ec32 ortholog description	Hypothetical protein
Hectar predicted targeting category	no signal peptide or anchor

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927548.121821-CDS-E-siliculosus-1a_F_contig1046:32209..32270	1622927548.121821-CDS-E-siliculosus-1a_F_contig1046:32209..32270	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1046 32210..32270 -
1696318579.7612417-CDS-E-siliculosus-1a_F_contig1046:32209..32270	1696318579.7612417-CDS-E-siliculosus-1a_F_contig1046:32209..32270	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1046 32210..32270 -
1622927548.1367462-CDS-E-siliculosus-1a_F_contig1046:32284..32340	1622927548.1367462-CDS-E-siliculosus-1a_F_contig1046:32284..32340	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1046 32285..32340 -
1696318579.7709343-CDS-E-siliculosus-1a_F_contig1046:32284..32340	1696318579.7709343-CDS-E-siliculosus-1a_F_contig1046:32284..32340	Ectocarpus siliculosus Ec863f_EcPH12_90f female	CDS	E-siliculosus-1a_F_contig1046 32285..32340 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-siliculosus-1a_F_contig1046.334.1	prot_E-siliculosus-1a_F_contig1046.334.1	Ectocarpus siliculosus Ec863f_EcPH12_90f female	polypeptide	E-siliculosus-1a_F_contig1046 32210..32340 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig1046:32210..32340-
coding sequence from alignment at E-siliculosus-1a_F_contig1046:32210..32340-

protein sequence of mRNA_E-siliculosus-1a_F_contig1046.334.1

>prot_E-siliculosus-1a_F_contig1046.334.1 ID=prot_E-siliculosus-1a_F_contig1046.334.1|Name=mRNA_E-siliculosus-1a_F_contig1046.334.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=39bp
GTHYTQPQHSTLPDVGGATFPDVGEGTDTDTHPQSKGG*

mRNA from alignment at E-siliculosus-1a_F_contig1046:32210..32340-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig1046.334.1 ID=mRNA_E-siliculosus-1a_F_contig1046.334.1|Name=mRNA_E-siliculosus-1a_F_contig1046.334.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=131bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1046:32210..32340- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAACCCACTATACCCAGCCCCAACACTCCACGCTCCCAGATGTAGGGGG
GGCGACGTGAGTTCTTAGAGCTTTCCAGATGTAGGGGAAGGTACTGACAC
TGACACGCACCCCCAGTCGAAGGGGGGGTAG

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1046:32210..32340-

>mRNA_E-siliculosus-1a_F_contig1046.334.1 ID=mRNA_E-siliculosus-1a_F_contig1046.334.1|Name=mRNA_E-siliculosus-1a_F_contig1046.334.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=234bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1046:32210..32340- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGAACCCACTATACCCAGCCCCAACACTCCACGCTCCCAGATGTAGGGGG
GGCGACGGAACCCACTATACCCAGCCCCAACACTCCACGCTCCCAGATGT
AGGGGGGGCGACCTTTCCAGATGTAGGGGAAGGTACTGACACTGACACGC
ACCCCCAGTCGAAGGGGGGGTAGCTTTCCAGATGTAGGGGAAGGTACTGA
CACTGACACGCACCCCCAGTCGAAGGGGGGGTAG