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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10414.321.1 vs. uniprot
Match: A0A6H5J6M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M3_9PHAE) HSP 1 Score: 358 bits (919), Expect = 1.700e-123 Identity = 181/195 (92.82%), Postives = 185/195 (94.87%), Query Frame = 1 Query: 1 MVEATPATLHVWRVIGEESGVAAYAAARAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVESGAEIAKREQKLPGLMVSSDVPGAFKAAELKPRLGVPPDEPLLPALGQRQPPAVLVCRESVGEWEVAVPHNLLGVMACGNAWEERRVAEFRPRAGITAEAR 585
MVEATPATLHVWRVIG+ESGVAAYAAARAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPL ACGAVALVVDDTGEKVE+GAE AKRE KLPGLMVSSD+PGAFKAA LK RLGVP DEPLLPALG+RQPP VLVCRESVGEWEVAVPHNLLGVMA GNAWEERRVAEFRP GITAEAR
Sbjct: 16 MVEATPATLHVWRVIGDESGVAAYAAARAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLGACGAVALVVDDTGEKVEAGAEFAKRENKLPGLMVSSDIPGAFKAAVLKSRLGVPSDEPLLPALGRRQPPVVLVCRESVGEWEVAVPHNLLGVMARGNAWEERRVAEFRPHTGITAEAR 210
BLAST of mRNA_E-siliculosus-1a_F_contig10414.321.1 vs. uniprot
Match: D7FX34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX34_ECTSI) HSP 1 Score: 288 bits (737), Expect = 1.210e-96 Identity = 145/153 (94.77%), Postives = 148/153 (96.73%), Query Frame = 1 Query: 127 MYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVESGAEIAKREQKLPGLMVSSDVPGAFKAAELKPRLGVPPDEPLLPALGQRQPPAVLVCRESVGEWEVAVPHNLLGVMACGNAWEERRVAEFRPRAGITAEAR 585
MYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVE+GAE AKREQKLPGLMVSSD+PGAFKAA LK RLGV PD+PLLPALGQRQPPAVLVCRESVGEWEVAVPHNLLGVMA GNAWEERRVAEFRPRAGITAEAR
Sbjct: 1 MYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVEAGAETAKREQKLPGLMVSSDIPGAFKAAVLKSRLGVLPDDPLLPALGQRQPPAVLVCRESVGEWEVAVPHNLLGVMARGNAWEERRVAEFRPRAGITAEAR 153
BLAST of mRNA_E-siliculosus-1a_F_contig10414.321.1 vs. uniprot
Match: A0A0G4I9W5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I9W5_9ALVE) HSP 1 Score: 91.3 bits (225), Expect = 1.080e-18 Identity = 73/197 (37.06%), Postives = 102/197 (51.78%), Query Frame = 1 Query: 16 PATLHVWRVIGEESGVAAYAAA----RAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLP----LAACGAVALVVDD---TGEKVESGAEIAKREQKLPGLMVSSDVPGAFKAAELKPRLGVPPDEPLLPALGQRQPPAVLVCRESVGEWEVAVPHNLLGVMACGNAWEERRVAEFRPRAGIT 573
PA+L V++++G + V Y AA R S A E DWSA+Y Q +A+GTL YRWDQG+ +A L +++L A GA A + TG +VES + K G M V G KA LK L + + PL+ LG R VL C+E+ G+WE+AVPH+ + +RR EF + G+T
Sbjct: 22 PASLSVFKIVGGKETVEEYLAAVHKARGGSETAK-EPDWSALYLQFDEAHALGTLPYRWDQGFSLASLWKLTLKGKEESPAPGAAASAGGEGKGTGGQVESTVGLQAVIVK-GGWMAGGSVAGEEKADILKKSLELNVELPLMAQLGSRG--MVLCCKETGGQWEMAVPHSCVSRFMSNTV--QRREKEFEEKCGMT 212
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 585 |
| Model size | 585 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927545.614682-CDS-E-siliculosus-1a_F_contig10414:1480..2065 | 1622927545.614682-CDS-E-siliculosus-1a_F_contig10414:1480..2065 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10414 1481..2065 - |
| 1696318577.9353678-CDS-E-siliculosus-1a_F_contig10414:1480..2065 | 1696318577.9353678-CDS-E-siliculosus-1a_F_contig10414:1480..2065 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10414 1481..2065 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10414.321.1 >prot_E-siliculosus-1a_F_contig10414.321.1 ID=prot_E-siliculosus-1a_F_contig10414.321.1|Name=mRNA_E-siliculosus-1a_F_contig10414.321.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=195bp
MVEATPATLHVWRVIGEESGVAAYAAARAPSVPATTESDWSAMYFQLSPG
NAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVESGAEIA
KREQKLPGLMVSSDVPGAFKAAELKPRLGVPPDEPLLPALGQRQPPAVLV
CRESVGEWEVAVPHNLLGVMACGNAWEERRVAEFRPRAGITAEAR back to topmRNA from alignment at E-siliculosus-1a_F_contig10414:1481..2065- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10414.321.1 ID=mRNA_E-siliculosus-1a_F_contig10414.321.1|Name=mRNA_E-siliculosus-1a_F_contig10414.321.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=585bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10414:1481..2065- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGGCGACGCCTGCCACGCTCCATGTGTGGCGCGTGATTGGTGA
AGAATCAGGGGTTGCCGCGTACGCCGCCGCGCGTGCCCCATCGGTGCCGG
CGACGACAGAAAGCGACTGGAGCGCCATGTACTTCCAGCTTTCACCAGGT
AACGCGGTGGGCACGCTGGGCTACCGCTGGGACCAAGGCTACCCCGTGGC
CCGCCTCGTCCGGATCTCCCTGCCGCTTGCCGCCTGCGGTGCCGTCGCCC
TGGTGGTGGATGACACCGGGGAGAAGGTGGAATCAGGAGCGGAAATTGCA
AAAAGAGAACAGAAACTCCCGGGCCTAATGGTTTCATCAGACGTTCCGGG
TGCCTTCAAGGCGGCCGAGCTCAAGCCCAGGCTAGGCGTTCCGCCGGACG
AGCCCCTGCTACCGGCGTTGGGACAACGACAACCCCCGGCGGTTCTCGTT
TGCCGGGAGAGCGTCGGCGAGTGGGAGGTGGCCGTGCCACACAATCTCCT
GGGGGTTATGGCGTGCGGCAACGCCTGGGAAGAGCGGCGTGTGGCTGAGT
TCAGGCCTCGCGCCGGGATCACCGCCGAGGCGCGG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10414:1481..2065- >mRNA_E-siliculosus-1a_F_contig10414.321.1 ID=mRNA_E-siliculosus-1a_F_contig10414.321.1|Name=mRNA_E-siliculosus-1a_F_contig10414.321.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1170bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10414:1481..2065- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGGCGACGCCTGCCACGCTCCATGTGTGGCGCGTGATTGGTGA
AGAATCAGGGGTTGCCGCGTACGCCGCCGCGCGTGCCCCATCGGTGCCGG
CGACGACAGAAAGCGACTGGAGCGCCATGTACTTCCAGCTTTCACCAGGT
AACGCGGTGGGCACGCTGGGCTACCGCTGGGACCAAGGCTACCCCGTGGC
CCGCCTCGTCCGGATCTCCCTGCCGCTTGCCGCCTGCGGTGCCGTCGCCC
TGGTGGTGGATGACACCGGGGAGAAGGTGGAATCAGGAGCGGAAATTGCA
AAAAGAGAACAGAAACTCCCGGGCCTAATGGTTTCATCAGACGTTCCGGG
TGCCTTCAAGGCGGCCGAGCTCAAGCCCAGGCTAGGCGTTCCGCCGGACG
AGCCCCTGCTACCGGCGTTGGGACAACGACAACCCCCGGCGGTTCTCGTT
TGCCGGGAGAGCGTCGGCGAGTGGGAGGTGGCCGTGCCACACAATCTCCT
GGGGGTTATGGCGTGCGGCAACGCCTGGGAAGAGCGGCGTGTGGCTGAGT
TCAGGCCTCGCGCCGGGATCACCGCCGAGGCGCGGATGGTGGAGGCGACG
CCTGCCACGCTCCATGTGTGGCGCGTGATTGGTGAAGAATCAGGGGTTGC
CGCGTACGCCGCCGCGCGTGCCCCATCGGTGCCGGCGACGACAGAAAGCG
ACTGGAGCGCCATGTACTTCCAGCTTTCACCAGGTAACGCGGTGGGCACG
CTGGGCTACCGCTGGGACCAAGGCTACCCCGTGGCCCGCCTCGTCCGGAT
CTCCCTGCCGCTTGCCGCCTGCGGTGCCGTCGCCCTGGTGGTGGATGACA
CCGGGGAGAAGGTGGAATCAGGAGCGGAAATTGCAAAAAGAGAACAGAAA
CTCCCGGGCCTAATGGTTTCATCAGACGTTCCGGGTGCCTTCAAGGCGGC
CGAGCTCAAGCCCAGGCTAGGCGTTCCGCCGGACGAGCCCCTGCTACCGG
CGTTGGGACAACGACAACCCCCGGCGGTTCTCGTTTGCCGGGAGAGCGTC
GGCGAGTGGGAGGTGGCCGTGCCACACAATCTCCTGGGGGTTATGGCGTG
CGGCAACGCCTGGGAAGAGCGGCGTGTGGCTGAGTTCAGGCCTCGCGCCG
GGATCACCGCCGAGGCGCGG back to top
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