mRNA_E-siliculosus-1a_F_contig10414.321.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10414.321.1
Unique NamemRNA_E-siliculosus-1a_F_contig10414.321.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10414.321.1 vs. uniprot
Match: A0A6H5J6M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6M3_9PHAE)

HSP 1 Score: 358 bits (919), Expect = 1.700e-123
Identity = 181/195 (92.82%), Postives = 185/195 (94.87%), Query Frame = 1 
Query:    1 MVEATPATLHVWRVIGEESGVAAYAAARAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVESGAEIAKREQKLPGLMVSSDVPGAFKAAELKPRLGVPPDEPLLPALGQRQPPAVLVCRESVGEWEVAVPHNLLGVMACGNAWEERRVAEFRPRAGITAEAR 585
            MVEATPATLHVWRVIG+ESGVAAYAAARAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPL ACGAVALVVDDTGEKVE+GAE AKRE KLPGLMVSSD+PGAFKAA LK RLGVP DEPLLPALG+RQPP VLVCRESVGEWEVAVPHNLLGVMA GNAWEERRVAEFRP  GITAEAR
Sbjct:   16 MVEATPATLHVWRVIGDESGVAAYAAARAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLGACGAVALVVDDTGEKVEAGAEFAKRENKLPGLMVSSDIPGAFKAAVLKSRLGVPSDEPLLPALGRRQPPVVLVCRESVGEWEVAVPHNLLGVMARGNAWEERRVAEFRPHTGITAEAR 210
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10414.321.1 vs. uniprot
Match: D7FX34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX34_ECTSI)

HSP 1 Score: 288 bits (737), Expect = 1.210e-96
Identity = 145/153 (94.77%), Postives = 148/153 (96.73%), Query Frame = 1 
Query:  127 MYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVESGAEIAKREQKLPGLMVSSDVPGAFKAAELKPRLGVPPDEPLLPALGQRQPPAVLVCRESVGEWEVAVPHNLLGVMACGNAWEERRVAEFRPRAGITAEAR 585
            MYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVE+GAE AKREQKLPGLMVSSD+PGAFKAA LK RLGV PD+PLLPALGQRQPPAVLVCRESVGEWEVAVPHNLLGVMA GNAWEERRVAEFRPRAGITAEAR
Sbjct:    1 MYFQLSPGNAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVEAGAETAKREQKLPGLMVSSDIPGAFKAAVLKSRLGVLPDDPLLPALGQRQPPAVLVCRESVGEWEVAVPHNLLGVMARGNAWEERRVAEFRPRAGITAEAR 153
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig10414.321.1 vs. uniprot
Match: A0A0G4I9W5_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I9W5_9ALVE)

HSP 1 Score: 91.3 bits (225), Expect = 1.080e-18
Identity = 73/197 (37.06%), Postives = 102/197 (51.78%), Query Frame = 1 
Query:   16 PATLHVWRVIGEESGVAAYAAA----RAPSVPATTESDWSAMYFQLSPGNAVGTLGYRWDQGYPVARLVRISLP----LAACGAVALVVDD---TGEKVESGAEIAKREQKLPGLMVSSDVPGAFKAAELKPRLGVPPDEPLLPALGQRQPPAVLVCRESVGEWEVAVPHNLLGVMACGNAWEERRVAEFRPRAGIT 573
            PA+L V++++G +  V  Y AA    R  S  A  E DWSA+Y Q    +A+GTL YRWDQG+ +A L +++L       A GA A    +   TG +VES   +     K  G M    V G  KA  LK  L +  + PL+  LG R    VL C+E+ G+WE+AVPH+ +          +RR  EF  + G+T
Sbjct:   22 PASLSVFKIVGGKETVEEYLAAVHKARGGSETAK-EPDWSALYLQFDEAHALGTLPYRWDQGFSLASLWKLTLKGKEESPAPGAAASAGGEGKGTGGQVESTVGLQAVIVK-GGWMAGGSVAGEEKADILKKSLELNVELPLMAQLGSRG--MVLCCKETGGQWEMAVPHSCVSRFMSNTV--QRREKEFEEKCGMT 212
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10414.321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5J6M3_9PHAE1.700e-12392.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX34_ECTSI1.210e-9694.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4I9W5_9ALVE1.080e-1837.06Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10414contigE-siliculosus-1a_F_contig10414:1481..2065 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size585
Model size585
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927545.614682-CDS-E-siliculosus-1a_F_contig10414:1480..20651622927545.614682-CDS-E-siliculosus-1a_F_contig10414:1480..2065Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10414 1481..2065 -
1696318577.9353678-CDS-E-siliculosus-1a_F_contig10414:1480..20651696318577.9353678-CDS-E-siliculosus-1a_F_contig10414:1480..2065Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10414 1481..2065 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10414.321.1prot_E-siliculosus-1a_F_contig10414.321.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10414 1481..2065 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10414.321.1

>prot_E-siliculosus-1a_F_contig10414.321.1 ID=prot_E-siliculosus-1a_F_contig10414.321.1|Name=mRNA_E-siliculosus-1a_F_contig10414.321.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=195bp
MVEATPATLHVWRVIGEESGVAAYAAARAPSVPATTESDWSAMYFQLSPG
NAVGTLGYRWDQGYPVARLVRISLPLAACGAVALVVDDTGEKVESGAEIA
KREQKLPGLMVSSDVPGAFKAAELKPRLGVPPDEPLLPALGQRQPPAVLV
CRESVGEWEVAVPHNLLGVMACGNAWEERRVAEFRPRAGITAEAR
back to top

mRNA from alignment at E-siliculosus-1a_F_contig10414:1481..2065-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10414.321.1 ID=mRNA_E-siliculosus-1a_F_contig10414.321.1|Name=mRNA_E-siliculosus-1a_F_contig10414.321.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=585bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10414:1481..2065- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGGCGACGCCTGCCACGCTCCATGTGTGGCGCGTGATTGGTGA
AGAATCAGGGGTTGCCGCGTACGCCGCCGCGCGTGCCCCATCGGTGCCGG
CGACGACAGAAAGCGACTGGAGCGCCATGTACTTCCAGCTTTCACCAGGT
AACGCGGTGGGCACGCTGGGCTACCGCTGGGACCAAGGCTACCCCGTGGC
CCGCCTCGTCCGGATCTCCCTGCCGCTTGCCGCCTGCGGTGCCGTCGCCC
TGGTGGTGGATGACACCGGGGAGAAGGTGGAATCAGGAGCGGAAATTGCA
AAAAGAGAACAGAAACTCCCGGGCCTAATGGTTTCATCAGACGTTCCGGG
TGCCTTCAAGGCGGCCGAGCTCAAGCCCAGGCTAGGCGTTCCGCCGGACG
AGCCCCTGCTACCGGCGTTGGGACAACGACAACCCCCGGCGGTTCTCGTT
TGCCGGGAGAGCGTCGGCGAGTGGGAGGTGGCCGTGCCACACAATCTCCT
GGGGGTTATGGCGTGCGGCAACGCCTGGGAAGAGCGGCGTGTGGCTGAGT
TCAGGCCTCGCGCCGGGATCACCGCCGAGGCGCGG
back to top

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10414:1481..2065-

>mRNA_E-siliculosus-1a_F_contig10414.321.1 ID=mRNA_E-siliculosus-1a_F_contig10414.321.1|Name=mRNA_E-siliculosus-1a_F_contig10414.321.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1170bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10414:1481..2065- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGTGGAGGCGACGCCTGCCACGCTCCATGTGTGGCGCGTGATTGGTGA
AGAATCAGGGGTTGCCGCGTACGCCGCCGCGCGTGCCCCATCGGTGCCGG
CGACGACAGAAAGCGACTGGAGCGCCATGTACTTCCAGCTTTCACCAGGT
AACGCGGTGGGCACGCTGGGCTACCGCTGGGACCAAGGCTACCCCGTGGC
CCGCCTCGTCCGGATCTCCCTGCCGCTTGCCGCCTGCGGTGCCGTCGCCC
TGGTGGTGGATGACACCGGGGAGAAGGTGGAATCAGGAGCGGAAATTGCA
AAAAGAGAACAGAAACTCCCGGGCCTAATGGTTTCATCAGACGTTCCGGG
TGCCTTCAAGGCGGCCGAGCTCAAGCCCAGGCTAGGCGTTCCGCCGGACG
AGCCCCTGCTACCGGCGTTGGGACAACGACAACCCCCGGCGGTTCTCGTT
TGCCGGGAGAGCGTCGGCGAGTGGGAGGTGGCCGTGCCACACAATCTCCT
GGGGGTTATGGCGTGCGGCAACGCCTGGGAAGAGCGGCGTGTGGCTGAGT
TCAGGCCTCGCGCCGGGATCACCGCCGAGGCGCGGATGGTGGAGGCGACG
CCTGCCACGCTCCATGTGTGGCGCGTGATTGGTGAAGAATCAGGGGTTGC
CGCGTACGCCGCCGCGCGTGCCCCATCGGTGCCGGCGACGACAGAAAGCG
ACTGGAGCGCCATGTACTTCCAGCTTTCACCAGGTAACGCGGTGGGCACG
CTGGGCTACCGCTGGGACCAAGGCTACCCCGTGGCCCGCCTCGTCCGGAT
CTCCCTGCCGCTTGCCGCCTGCGGTGCCGTCGCCCTGGTGGTGGATGACA
CCGGGGAGAAGGTGGAATCAGGAGCGGAAATTGCAAAAAGAGAACAGAAA
CTCCCGGGCCTAATGGTTTCATCAGACGTTCCGGGTGCCTTCAAGGCGGC
CGAGCTCAAGCCCAGGCTAGGCGTTCCGCCGGACGAGCCCCTGCTACCGG
CGTTGGGACAACGACAACCCCCGGCGGTTCTCGTTTGCCGGGAGAGCGTC
GGCGAGTGGGAGGTGGCCGTGCCACACAATCTCCTGGGGGTTATGGCGTG
CGGCAACGCCTGGGAAGAGCGGCGTGTGGCTGAGTTCAGGCCTCGCGCCG
GGATCACCGCCGAGGCGCGG
back to top