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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig104.313.1 vs. uniprot
Match: D7FVJ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVJ0_ECTSI) HSP 1 Score: 273 bits (697), Expect = 9.350e-88 Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 3 Query: 78 MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGTTYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA 482
MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVG AGVTGWFGLVGGFAFVTG TYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGM HVLLN+A
Sbjct: 1 MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGVAGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMDHVLLNVA 135
BLAST of mRNA_E-siliculosus-1a_F_contig104.313.1 vs. uniprot
Match: A0A6H5JT26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT26_9PHAE) HSP 1 Score: 116 bits (290), Expect = 3.100e-28 Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 3 Query: 306 FAFVTGTTYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA 482
FAFVTG TYLYYARF+EADELSYGDQGLKWEGLLPSLTVFLLMWILSF+ MGHVLLNIA
Sbjct: 17 FAFVTGATYLYYARFLEADELSYGDQGLKWEGLLPSLTVFLLMWILSFHSMGHVLLNIA 75
BLAST of mRNA_E-siliculosus-1a_F_contig104.313.1 vs. uniprot
Match: A0A5B6UL68_9ROSI (Rab5-interacting n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6UL68_9ROSI) HSP 1 Score: 53.9 bits (128), Expect = 3.530e-5 Identity = 42/120 (35.00%), Postives = 57/120 (47.50%), Query Frame = 3 Query: 147 KWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGTT-----------------YLYYARFVEADELSYGDQG-LKWEGLLPSLTVFLLMWILSFN 452
K++K L A WDKD D +HW RQ +A G+ G V G G + F+T TT Y YYA ++ DE +G L EGL+ S+T+FLL WIL ++
Sbjct: 25 KFAKLLDPEASWDKDQLGDV---LHWIRQVVALFYGLLWGAIPVVG-----GIWIFITVTTQAKDNYTGFSGHNTGIIYGYYAMTLKIDEEEFGGHAALLQEGLIASITLFLLAWILVYS 136
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 408 |
| Model size | 1374 |
| Exons | 3 |
| Ec32 ortholog | Ec-05_006040.1 |
| Ec32 ortholog description | Rab5-interacting protein family |
| Hectar predicted targeting category | signal anchor |
| BRITE | ko00000,ko00001,ko00002,ko03041 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | S |
| EggNOG OGs | KOG3415@1,KOG3415@2759 |
| EggNOG free text desc. | Rab5-interacting protein (Rab5ip) |
| KEGG Module | M00355 |
| KEGG Pathway | ko03040,map03040 |
| KEGG ko | ko:K12870 |
| Preferred name | C20orf24 |
| Seed eggNOG ortholog | 2880.D7FVJ0 |
| Seed ortholog evalue | 8.4e-72 |
| Seed ortholog score | 276.2 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig104.313.1 >prot_E-siliculosus-1a_F_contig104.313.1 ID=prot_E-siliculosus-1a_F_contig104.313.1|Name=mRNA_E-siliculosus-1a_F_contig104.313.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp
MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWF
RQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGTTYLYYARFVEADELSYG
DQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA* back to topmRNA from alignment at E-siliculosus-1a_F_contig104:72753..78209+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig104.313.1 ID=mRNA_E-siliculosus-1a_F_contig104.313.1|Name=mRNA_E-siliculosus-1a_F_contig104.313.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5457bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig104:72753..78209+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGCAGGCAGCTGCAGCAGCTCGGCTGTCGGACAACAGACAAGGACGAAG
CCCGCACCGGCAGTTGAGAGAGAAGCCATGAGTAACCGGAGCAGAAGAAC
AGTTGTGGCGGAGGCGGAGCCTACATTCGTGCAGAGCTGCTCGACAAAAT
GGTCTAAGGGGTTGCAGCGAGGCGCCAGATGGGATAAGGTATGTGTGCAG
TACATCTCCCCCCCTCGGTACTGCTGCTGTTGCGCCGTTGATCGCCCGCC
GTGCCTTGGGATGTCTCCAATGGTAGTCCCGCCTTTCTCCTGGTTGACCA
AACCTCGTAATGCCCATACATTTATGGGAACCATCAACTGCGCTCTGTGC
TCGTGGTGCTCTCCATCCCGCAAAAAGGCCGGGCTTTTCTGACGGTAAAA
TGAGAACCTTGTTTCCGGGTGGTTGCTCAACAGCGACAACAAGCAGCGGA
TGACGAGAGGAGACAATCCAGAAACGTACGTAGTCTCCAAATTCTCGTCC
TACAAAATTCACGGACATGAGATACCGCCATGATCTCGCTGGGAATATTT
GAAGGGAAACGTCAGGAGTTCTATATTTGTTTGCCCTCGAAACAGCAGCA
GCTTCTCCGGGCTCAGCGGCCTCCACGTGGGTCCACAATCTCGTCAACGG
GTAGCTACTGTATGGACATGACTTGTAGATTCCCAGTGGCGTGTCCTTGG
TGTACTACAGACTACTGCCGCTCATCTGGGTTCAATGTGCTCACCAGGCA
TGCCCGGATTGGTGGGCAAAATGTTACTCAGATATATATTTTTGTCTACT
GTAGTAGTCGGGTGTTTACCAGTAGATTACCCCGCTAGTCACCCGCGCCG
ATGGCACTGCTGTACATTTGCGGTTATCCCCGTGAAATCCCGGTCGCGAA
GACCCATGTTTATGGTCGCCAAATCTTTGCGAACATGTCGAAATTTTCAA
AGGTTTGCGGATAAAGATTTTGTTTCACTTTTTATGGGAGAAAATCTTTG
ACAAAATGTTCCCGAACGTTTTCGAATGGGGCAAAAGTCGCTCGTTTGAC
AAAATGTTTGACAAACATTTTGAAATGGGGCAGGTCGCGAAAATCTTTTC
CAAGAGCGGCGAGATTAGTAGCCGACCGCCCCTTCCGTCCTAAACACCAA
CCACCGCGCAGCGCACACTCAACGTAGCAAGCTCATGCAGGGATCCGGAC
AAGCCTAGAGTCGCCGTGTCAACGTTTTGCCGGCTGATACATGGCGGGAG
CTCGTCAAGCGTGCACCAAAAAACAAACAGGCAGGGGTGGTTCGGAGGGC
ACGTAGAAAACGTGGTTTGTGTCTCCGAACGGCAAAAAGTCGGCTGCTTG
AGAGGAGACGTGAGTACAAAACTATCCAGCTCTCGTCCTCTAGACCATCG
ATTCATGTNNNNNNNNNCTTGGGTGTCTTCTCCATCAACGGCTCTCATCC
GGGTGTGCGTGGTTCAGCAGTGGACGTACTCAACAGGCAGGGAGGCGCGT
CGCTGTGAACTCGATGTGTTGAAAAAATCTTTTTTGGGACGGAGGAACAA
GCCCTCTATATTCAAGTGAAAAAATTGACCGAAAAAAACGTTGTGCCCAC
AACTTTGCGCGCACAACGATGTGCCTCCCTGCCGACTGAGCACGGCCACT
GCCAACCCACGCGCAACCGGATGAGAGTCGTTGATGGAGAAGACACCCAA
GAACACAAAACATATAATCGGTAGTCTAGCGGGCGAGAGCTGGATAGTTT
TGTACTCACGTGTCCTCTCAAGCGGCCGACATTTTCCCGTTGGGAAGCGC
TGACGCACGTTTTGGTCTCTTTTTGACACCGACAACATTTTTTCTCGCAC
GCCCGGAGCGCTATCGCCACATATTGGCGGGCACAGCATCAGCTCAGTGC
ATCAAGGGTTGTGGGGAGCCCTTGCGAGCTCGTTACATCAGTTTCCATGA
CGCATGTGTGGTTTGTCTGTCACAAATCGTTTGGTAGCAGTAAACAACGA
TTCCCGCCGCACTTCTGCTGCATTCCGAGAAAACCACACGATAAGATATT
TTTGCGCATAAAAACGGTACTCAAATGTTCCTCTGGCAGATATTCCTACG
CAAATGTTTGACAGCATTTGAAGATTTATTTCCAACATTTTGAAACCATT
AACATGGGTCTAATTCTCGGCAAGTGTCCAAAGTCTGAGGTGTGGATGTA
TTATTGACCCTCTTTGACATTGCGGGTTTTCTCGTGCGCTTTGCGAAGTG
CGACTAGATATATATGTTCGAAGCCAAAGCTTCAACGACTCGGTACTGCG
TACGCACACAAGTTGTTCTTCGGGCCCCGTTGTCCAATCTCCTCCCTCTT
GCGACCCTCCTGTCGGGGGACAAGTCTACGCAGGGAAAAATGTGGAATCG
GCTAAGTTGGGGGTTAAAGGGTTGGGGTTAGGGTGTGTGTGCCCCCTCCC
TGGCCTTTTTTCGTGCTAATCTTGCTGTCTTTGCGTAGGCAGTCCGTCGG
GGGACTAGAAGGCCGTTGTGGCGCTTTTTCTTTCGCCGTAAGAACACGGG
TAGCCCCAGCGTTCTAGTTTTTTCCCGTGGCAACCCACGTGTGTGCCGCA
CCCTAACTCCCACTTATGGGATTTCAACGCGTTCAGCCTATCTACACGCT
GTAGACTGTACCCCCACCTGGTACTGATCTGTCCCACAAGACACCGCGAC
ATCCATGGCCTGTAGTATCCAAGGCTCGTTGTTTTTGCGGCGGCAGTGAT
GTCCCACCCTTGCGCAAACCATTGTCCCGCTCGCTGTTGAGTCCATCAGT
GCGTTGCCAGGCATCCCCTTGGTTTTCGTACATTCAGATCACGGGGCGAG
CGCGGAGCTAAGCCTGAGTGCCGTGTCCTAGCTAGGTCTCTCTGGCCCAC
GCGACTGTTACACCGTTTTTTTTCCTCTTAGCCACGATAGTGCCGTCGGG
TTGAATCTGCGAGGACCCGTACATAATTACCCACACATTTAGAAGGTTTC
TCGCAGCAGTCGGGTCTGGTCACATCTGTTTACCCAGTTATGGTCAAGGA
GCAAAATAATAAATATGACGAGCGCAACAAACAATGATGGTTGTGTTTTT
TTTTGTGTTTATCAACAACGGTAGGCGAACCAAAACCGGTCTTCATCGCA
TATCATATGTCGCGCCAAACTTAAGTCGAACAACCTCCCTTGTTCGTTTT
CGCCGTAGTGGTTCGGAGAGTGCCTTCTTGTTGAGGTGGTGCCGCTCTTG
TTGTGCTCGTGCTGCCCCTTGGTTCACGTTTATTTGCTCCGAGGTGGTTT
CCGTTGACCGCTCGCTCATGAGGTTCTAGATAATTCACCGCGCTCCTGCT
GCTGCTGCTGCTGCCGTCGCCTCCACGGCGTTGCCATTCCGGTTTTTAAT
GTTGTCCGCAGGACACATTCGAAGACTTTCCCGTATGCGTCCACTGGTTC
AGACAATTCATGGCGGCGGTGGCGGGGATATGTGTGGGTTTCGCGGGAGT
CACTGGATGGTTCGGGCTCGTGGGGTGAGCAAGTTGTGATCGCGTTAGCT
TCGTCACTGAGCGGCACGTGATTGCCCGGTTCTTGTTCCTGGACCTTTGT
CAGACATATATGGCTCGTGTGTTGTCTACTCTGCGCACATGAATCGTAAG
GGATGGCGCGGACTGTTCCTCAAGACTCCCCTCCTAACCTCCAGAAATTC
ACTGTTGAGTAGATGAATGACCAACGTTCGGCACCAAACACACCAAGAAC
GCCATACTTGTCTGTGCCCTCCCTCCCGCGGCCGGGGACCACACCAATCA
TTGAGGCGAAATGTCCTCGCGGTGGAAAGGCAAGCGCCAAAGGACGGATG
ATCATTGGATGGTAGAGACCTTTTTTTTTTCTTCGCTTTCGCCGGCGTCC
ACACGGCACTCGTACAGGCAAGTACAGCCAAAGTGCTTTCCCGTGGCGGG
TGCATGCGCCATGTCGCCTACACAAGAGGGTGGTGGATGACAAATGATTC
ATTGAAGTCACCCCTACTTTTCTGTGGGGTTTGCACACCCCGACCAGTAA
GTTTCTGGCCTAGCCAGGGCTTCGGCTCCGCAATGACGAGTTTCGCTGCC
CCCTTCCCCGCTGAGACACTGCCAGCGCGGGGTTTATTGAATGAATGGTA
ATGTAGATCTGTGTTACCGTCTGTGTGTGCAAGCACCGAAACGCAAGGGT
CACGCGTCACCGTGTGCCCGAACAAACACTGCGATTAACTCCCCACACCA
TTTTGGATCCGTCCAAGTTTCGGACTTCCAGTGGCATCTCGTGGCGACAG
GAGTTGTGCGCCCCCTCCTGCGGTTTCACATTTCTGAAAAATGACGCCGC
CCTCTGTGTGCTTGTCCGCTTGGCGTGTACGAAGGGGATTCGCCTTCGTC
ACGGGGACCACTTACTTGTACTACGCGAGATTCGTCGAGGCGGACGAGTT
GTCATACGGTGACCAGGGCCTGAAATGGGAGGGACTGCTGCCATCTCTCA
CGGTCTTCCTCCTGATGTGGATCTTGTCATTCAACGGCATGGGGCATGTC
TTGTTGAATATAGCGTAGGGAGGCCGGGGGGAGTTGGTAGAAACAGTGCT
TGGACTGCCTCGGGACTTGGGTTGCCGGAGGCCGCGCGTGACACCGACAT
GTTGCTGGGGGAAAACATCTGGAGGGGGAGGACTTCTGGAGCGTGAGGAA
GTTGGGGGACGATGGGACCGACGAACGCGAGCAACGAAATGAGCGTCGGG
AAGCTAGCTCCTTCCTAAGGCGTTCGTTGATGTGCTGAGAGCTTCGAGTG
TGGGCTTGACACTCGGCAAACTCTCGAGCCAGGGCGACTCGCTCGCTGGG
GTGATGGGCGGAGAGAGCCAGCTTCGAGCGGCATGCCTTTTTGGTTCCAC
ATATGAAGGAGAGTATATGTAGAAATGACAGCCTGTGTAACGTGGTCTTG
GCGGTTGCAGGAGGGTGCGCTCGTTTGTTGACCCAGCATCTCACTCTTGG
CAAATCTCAGTTTCTACTCTTGAACGAGATGTACTGGAGAGATCGACTTT
CACGTGCATGCTGCGCTTCCATCCCGTGCCTTGGGCGATGTGCTAGGTCG
GGCACCTGTCGGTTGGTGCTGTTGCGATCTTGTGTCATGAGAATGAGTAT
GAGAGTTACCTCGCGCTACGGATGGGCTGAAGGAGTTTGTTGAAGAGTGT
AGTCATGGCCACCTGTCGATTTTGCTTTCTGTTTCAAGGAGGCGCGACCT
TTCTGTGTCGACCATATTTTTGTTCGGTCTGCTTTTTCGTTCGTCTGGAT
TTTGGGTCAGGTTCCTGTTCGGGAGAAGCTTTCGTTGTTTATTTGAATGG
GCAGGAGCACATTCCGCGCGCACCTTGAAATAATTTAGGCACTTCAGCAC
TACGACAAAGTTTCTGACCGTCTCTTTCACGAAAATGTTTTGTTGCGTTG
TGGCTAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig104:72753..78209+ >mRNA_E-siliculosus-1a_F_contig104.313.1 ID=mRNA_E-siliculosus-1a_F_contig104.313.1|Name=mRNA_E-siliculosus-1a_F_contig104.313.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig104:72753..78209+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGAGTAACCGGAGCAGAAGAACAGTTGTGGCGGAGGCGGAGCCTACATT
CGTGCAGAGCTGCTCGACAAAATGGTCTAAGGGGTTGCAGCGAGGCGCCA
GATGGGATAAGATGAGTAACCGGAGCAGAAGAACAGTTGTGGCGGAGGCG
GAGCCTACATTCGTGCAGAGCTGCTCGACAAAATGGTCTAAGGGGTTGCA
GCGAGGCGCCAGATGGGATAAGGACACATTCGAAGACTTTCCCGTATGCG
TCCACTGGTTCAGACAATTCATGGCGGCGGTGGCGGGGATATGTGTGGGT
TTCGCGGGAGTCACTGGATGGTTCGGGCTCGTGGGGACACATTCGAAGAC
TTTCCCGTATGCGTCCACTGGTTCAGACAATTCATGGCGGCGGTGGCGGG
GATATGTGTGGGTTTCGCGGGAGTCACTGGATGGTTCGGGCTCGTGGGGG
GATTCGCCTTCGTCACGGGGACCACTTACTTGTACTACGCGAGATTCGTC
GAGGCGGACGAGTTGTCATACGGTGACCAGGGCCTGAAATGGGAGGGACT
GCTGCCATCTCTCACGGTCTTCCTCCTGATGTGGATCTTGTCATTCAACG
GCATGGGGCATGTCTTGTTGAATATAGCGTAGGGGATTCGCCTTCGTCAC
GGGGACCACTTACTTGTACTACGCGAGATTCGTCGAGGCGGACGAGTTGT
CATACGGTGACCAGGGCCTGAAATGGGAGGGACTGCTGCCATCTCTCACG
GTCTTCCTCCTGATGTGGATCTTGTCATTCAACGGCATGGGGCATGTCTT
GTTGAATATAGCGTAG back to top
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