Homology
BLAST of mRNA_E-siliculosus-1a_F_contig104.313.1 vs. uniprot
Match:
D7FVJ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVJ0_ECTSI)
HSP 1 Score: 274 bits (700), Expect = 3.380e-93
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 0
Query: 1 MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGTTYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA 135
MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVG AGVTGWFGLVGGFAFVTG TYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGM HVLLN+A
Sbjct: 1 MSNRSRRTVVAEAEPTFVQSCSTKWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGVAGVTGWFGLVGGFAFVTGATYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMDHVLLNVA 135
BLAST of mRNA_E-siliculosus-1a_F_contig104.313.1 vs. uniprot
Match:
A0A6H5JT26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT26_9PHAE)
HSP 1 Score: 115 bits (289), Expect = 2.200e-31
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 0
Query: 77 FAFVTGTTYLYYARFVEADELSYGDQGLKWEGLLPSLTVFLLMWILSFNGMGHVLLNIA 135
FAFVTG TYLYYARF+EADELSYGDQGLKWEGLLPSLTVFLLMWILSF+ MGHVLLNIA
Sbjct: 17 FAFVTGATYLYYARFLEADELSYGDQGLKWEGLLPSLTVFLLMWILSFHSMGHVLLNIA 75
BLAST of mRNA_E-siliculosus-1a_F_contig104.313.1 vs. uniprot
Match:
A0A5B6UL68_9ROSI (Rab5-interacting n=1 Tax=Gossypium australe TaxID=47621 RepID=A0A5B6UL68_9ROSI)
HSP 1 Score: 53.5 bits (127), Expect = 2.590e-6
Identity = 42/120 (35.00%), Postives = 57/120 (47.50%), Query Frame = 0
Query: 24 KWSKGLQRGARWDKDTFEDFPVCVHWFRQFMAAVAGICVGFAGVTGWFGLVGGFAFVTGTT-----------------YLYYARFVEADELSYGDQG-LKWEGLLPSLTVFLLMWILSFN 125
K++K L A WDKD D +HW RQ +A G+ G V G G + F+T TT Y YYA ++ DE +G L EGL+ S+T+FLL WIL ++
Sbjct: 25 KFAKLLDPEASWDKDQLGDV---LHWIRQVVALFYGLLWGAIPVVG-----GIWIFITVTTQAKDNYTGFSGHNTGIIYGYYAMTLKIDEEEFGGHAALLQEGLIASITLFLLAWILVYS 136
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig104.313.1 vs. uniprot
Analysis Date: 2022-09-16 (
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 3
M S N R S R R T V V A E A E P T F V Q S C S T K W S K G L Q R G A R W D K D T F E D F P V C V H W F R Q F M A A V A G I C V G F A G V T G W F G L V G G F A F V T G T T Y L Y Y A R F V E A D E L S Y G D Q G L K W E G L L P S L T V F L L M W I L S F N G M G H V L L N I A * 20 40 60 80 100 120 Expect = 3.38e-93 / Id = 97.04 Expect = 2.20e-31 / Id = 93.22 Expect = 2.59e-6 / Id = 35.00 Sequence D7FVJ0_ECTSI A0A6H5JT26_9PHAE A0A5B6UL68_9ROSI back to top
InterPro
Analysis Name:
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
M S N R S R R T V V A E A E P T F V Q S C S T K W S K G L Q R G A R W D K D T F E D F P V C V H W F R Q F M A A V A G I C V G F A G V T G W F G L V G G F A F V T G T T Y L Y Y A R F V E A D E L S Y G D Q G L K W E G L L P S L T V F L L M W I L S F N G M G H V L L N I A * 20 40 60 80 100 120 Expect = 1.4E-10 / Score = 41.6 Score = Score = Score = Score = Score = Score = Score = Score = Score = Sequence PF07019 PTHR12906 PTHR12906:SF0 TRANSMEMBRANE NON_CYTOPLASMIC_DOMAIN CYTOPLASMIC_DOMAIN CYTOPLASMIC_DOMAIN TRANSMEMBRANE TMhelix TMhelix
IPR Term IPR Description Source Source Term Source Description Alignment
IPR029008 Rab5-interacting protein family PFAM PF07019 Rab5ip coord: 47..124 IPR010742 Rab5-interacting protein PANTHER PTHR12906 PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN coord: 19..125 None No IPR available PANTHER PTHR12906:SF0 PROTEIN TGIF2-C20ORF24 coord: 19..125 None No IPR available PHOBIUS TRANSMEMBRANE Transmembrane region coord: 57..88 None No IPR available PHOBIUS NON_CYTOPLASMIC_DOMAIN Non cytoplasmic domain coord: 89..107 None No IPR available PHOBIUS CYTOPLASMIC_DOMAIN Cytoplasmic domain coord: 1..56 None No IPR available PHOBIUS CYTOPLASMIC_DOMAIN Cytoplasmic domain coord: 133..135 None No IPR available PHOBIUS TRANSMEMBRANE Transmembrane region coord: 108..132 None No IPR available TMHMM TMhelix coord: 57..79 None No IPR available TMHMM TMhelix coord: 110..132
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence
>prot_E-siliculosus-1a_F_contig104.313.1 ID=prot_E-siliculosus-1a_F_contig104.313.1|Name=mRNA_E-siliculosus-1a_F_contig104.313.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=136bp back to top
Annotated Terms
The following terms have been associated with this polypeptide: