mRNA_E-siliculosus-1a_F_contig1039.299.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1039.299.1 vs. uniprot
Match: D7FT34_ECTSI (Ankyrin 2, neuronal isoform 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT34_ECTSI) HSP 1 Score: 623 bits (1606), Expect = 5.350e-216 Identity = 474/614 (77.20%), Postives = 486/614 (79.15%), Query Frame = 1 Query: 1 MYPKREALRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVAALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRAPLHRAALHGHEAATRVLMMAGANVNLLDGDKRGALALAIRGGHDNVVCSLLLGGASPNGKDKKGDSPLHVAAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVNAGDSTGYTALHTAADNNQGAXXXXXXXXXXXXXXXXXXXXXXXXXXXRYNSCCDVVRXXXXXXXXXXXXXXXXXXXXXXXXXTQADRVVDLLLRWGADEMKANHNGDKHVPVPLLHFVPRHTADVVGTTVADDEPVLSEGQRKERKERVTRLLANAHVDRTWRRRGWLVLCRSRYLLSKMPRDIVDCHQGEVGEDLLRSGSRSNAKKESSGGRNXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------HHSGATSPLFGQAPGDGDDNGRVAAVDATTSTRANGIGIGGGAPNSGGNDSDDSDDGTDRIEARLKSSGVCFALLALAEVEEGLFRKVAAYI 1791
MYPKREALRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLV ALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKR PLH AALHGHEAATRVLMMAGANVNLLDG+KRG ASPNGKDKKGDSPLHVAAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VD+NAGDSTGYTALHTAAD XXXXXXXXXXXXXXXXXXXXXXXXXXXR+NSCCDVVRXXXXXXXXXXXXXXXXXXXXXXXXXTQADRVVDLLLRWGADE KANHNGD VPVPLL F+PRHTADVVGT+VADDE VL EGQRKE+KE V RLLANAHVDRTWRRRGWLVLCRSRYLLSKMPRD+VDCHQG GEDLLRSGSRSNA K+SS GRN XXXXXXXXXXXXXXXXX HSGATSPLFGQA G GDDNGR AAV AT +TRANGIGIGG A NS GNDSDD DGTD IEA KSSG CFALLALAEV++GLFRKV AY+
Sbjct: 1 MYPKREALRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVTALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRGPLHHAALHGHEAATRVLMMAGANVNLLDGEKRGXXXXXXXXXXXXXXXXXXXXXASPNGKDKKGDSPLHVAAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMVGPLLMAGANPGIRFGEHELSPLDSAVSDGHMGVLRALVLHGVDINAGDSTGYTALHTAADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFNSCCDVVRXXXXXXXXXXXXXXXXXXXXXXXXXTQADRVVDLLLRWGADEGKANHNGD--VPVPLLRFLPRHTADVVGTSVADDELVLPEGQRKEKKEHVIRLLANAHVDRTWRRRGWLVLCRSRYLLSKMPRDMVDCHQGGGGEDLLRSGSRSNANKKSSDGRNRATKMIRTMAXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGARSRHSGATSPLFGQATGGGDDNGRAAAVAATANTRANGIGIGG-AANSSGNDSDDGGDGTDWIEAHRKSSGACFALLALAEVDDGLFRKVVAYM 611
BLAST of mRNA_E-siliculosus-1a_F_contig1039.299.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE) HSP 1 Score: 157 bits (396), Expect = 1.100e-37 Identity = 149/493 (30.22%), Postives = 199/493 (40.37%), Query Frame = 1 Query: 1 MYPKREALRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVAALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRAPLHRAALHGHEAATRVLMMAGANVNLLD-GDKRGALALAIRGGHDNVVCSLLLGGASPNGKDKKGDSPLHVAAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVD---VNAGDSTGYTALHTAADNNQGAXXXXXXXXXXXXXXXXXXXXXXXXXXXRYNSCCDVVRXXXXXXXXXXXXXXXXXXXXXXXXXTQA--DRVVDLLLRWGADEMKANHNGDKHVPVPLLHFVPRHTADV---------VGTTVADDEPVLSEGQRKERKERVTRLLANAHVDRTWRRRGWLVLCRSRYLLSKMPRDIVDCHQGEVGEDLLRSGSRSNAKKESSGGRN 1434
+YPKR L + E+ ++ ATP+QWA+W+R P+EHAAA+G LV LL AG G +G RG GRT+LDAAA GGN +VV+ +L +G D+ + S +R+ LH A++ GHEAA + L++AGA+VN +D GD +L +A+ G H ++V LL+GGA PN + G +PLH+AAA + V A D+ G TALH A NSC VV DR+VDLLLRWGA E N NG + + H D VG + + + E QR RV LLA A DRTWRRR WLV+ R+R E G SGS S+ + E++ GRN
Sbjct: 3 LYPKRALLEGAELEIFKLLYFGATPEQWAEWLRAPLEHAAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASDVNVVSLSSRRSALHVASVCGHEAAAKKLIIAGADVNRVDPGDACVSLHVAVEGRHGDLVDLLLIGGACPNSRTMSGRTPLHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHARGAQAVDVLLDAGADVNAKACPALHGFTPLSVCVMDNSCEAVVALLKRGGNVNDTNCGGLSALHLTCGSLSRGMDRMVDLLLRWGASETAVNKNGLTPSDILKVTTAEYHARDAGGDGSATRCVGGSATRHDSLTKEIQRA----RV--LLARAPADRTWRRRCWLVMLRAR---------------AERGRGAPSSGSGSD-RTEAATGRN 473
BLAST of mRNA_E-siliculosus-1a_F_contig1039.299.1 vs. uniprot
Match: A0A6H5JK08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK08_9PHAE) HSP 1 Score: 143 bits (361), Expect = 2.050e-33 Identity = 89/173 (51.45%), Postives = 102/173 (58.96%), Query Frame = 1 Query: 106 VEHAAAQGKFDLVAALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRAPLHRAALHGHEAATRVLMMAGANVNLLDGDKRGALALAIR-------------------------------GGHDNVVCSLLLGGASPNGKDKKGDSPLHVAA 531
VEHAAA G F+LV ALLKAGGTG+ G+RG GRT+LDA PD RS K+R+ LHRAALHGHEAA RVLMMAGANV LD KRG LALA+R G H+++VCSLLLGGA P+ KDKKGD+PLH+AA
Sbjct: 35 VEHAAANGNFELVTALLKAGGTGSPGLRGCRGRTLLDAXXXXXXXXXXXXXXXXXXTPDRCARSASKRRSALHRAALHGHEAAARVLMMAGANVGSLDAVKRGPLALAVRRNVVESLSIRCDLDCSNLSSSPRETCCAHERGEHEHLVCSLLLGGACPSAKDKKGDAPLHLAA 207
BLAST of mRNA_E-siliculosus-1a_F_contig1039.299.1 vs. uniprot
Match: D8LE08_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE08_ECTSI) HSP 1 Score: 142 bits (357), Expect = 4.730e-33 Identity = 83/179 (46.37%), Postives = 112/179 (62.57%), Query Frame = 1 Query: 1 MYPKREALRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVAALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRAPLHRAALHGHEAATRVLMMAGANVNLLD-GDKRGALALAIRGGHDNVVCSLLLGGASPNGKDKKGDSPLHVAAA 534
+YPKR L + E+ ++ ATP+QWADW+R P+EHAAA+G LV LL+AG G +G RG GRT+LDAA +G PD+ + S KR+ LH A + GHEAA R LM+AGAN+ +D GD+ +A GGH ++V +LL+GGA PN + + G +PLHVAAA
Sbjct: 3 LYPKRALLEGAEVEIFKLLSFCATPEQWADWLRAPLEHAAARGNIGLVERLLEAGADGRAGWRGCRGRTMLDAAXXXXXXXXXXXXXXSGCAPDVNVVSVSSKRSALHLAVVCGHEAAARTLMIAGANIRRVDPGDQCVPFHVAAEGGHGDLVGNLLIGGACPNSRTRFGRTPLHVAAA 181
BLAST of mRNA_E-siliculosus-1a_F_contig1039.299.1 vs. uniprot
Match: A0A6H5JY41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE) HSP 1 Score: 137 bits (345), Expect = 4.670e-31 Identity = 80/175 (45.71%), Postives = 111/175 (63.43%), Query Frame = 1 Query: 7 PKREALRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVAALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRAPLHRAALHGHEAATRVLMMAGANVNLLDGDKRGA-LALAIRGGHDNVVCSLLLGGASPNGKDKKGDSPLHVA 528
PKR L E+ E+ ++ ATP++WA+W+R P EHAAA+G LV LL+AG G +G RG RT+LDAAA GGN +VV+ +L + PD+ + S KR+ LH A HEAA R LM+AGA+ + +D R +A GGHD++V + L GGA PN + + G +PLH+A
Sbjct: 5 PKRALLEEAELEIFKLLSFGATPERWAEWLRAPQEHAAARGNIGLVERLLEAGADGGAGWRGCRSRTMLDAAALGGNADVVTKLLRSECVPDVNVVSVSSKRSALHLAVTWSHEAAARTLMIAGADNHRVDPVNRYTPFHVAAEGGHDDLVDNYLTGGACPNSRSRVGRTPLHLA 179
BLAST of mRNA_E-siliculosus-1a_F_contig1039.299.1 vs. uniprot
Match: D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI) HSP 1 Score: 136 bits (342), Expect = 1.020e-30 Identity = 80/168 (47.62%), Postives = 112/168 (66.67%), Query Frame = 1 Query: 40 ELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVAALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRAPLHRAALHGHEAATRVLMMAGANVNLLD-GDKRGALALAIRGGHDNVVCSLLLGGASPNGKDKKG---DSPLHVAA 531
E+ +V + ATP+QWA W+R P+EHAAA G +LV LLKAG G +G RG GR++LDAAA GGN V+SA+L AG PD+ + + R+ L+++ L HEAA R L++AGA+VN +D DK G L A++ G D++V +LL+ GA+PN + +PLH AA
Sbjct: 14 EIFKIVSEGATPEQWARWLRAPLEHAAASGNLNLVDRLLKAGVDGKAGWRGCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALYQSVLGKHEAAARKLILAGADVNFVDRADKAGPLFAAVKAGCDDLVGNLLMAGANPNVIVRHSFGHGTPLHAAA 181
BLAST of mRNA_E-siliculosus-1a_F_contig1039.299.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 126 bits (317), Expect = 2.340e-27 Identity = 142/440 (32.27%), Postives = 182/440 (41.36%), Query Frame = 1 Query: 1 MYPKREALRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVAALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRAPLHRAALHGHEAATRVLMMAGANVNLLD-GDKRGALALAIRGGHDNVVCSLLLGGASPNGKDKKGDSPLHVAAAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDVNAGDSTGYTALHTAADNNQGAXXXXXXXXXXXXXXXXXXXXXXXXXXXRYNSCCDVVRXXXXXXXXXXXXXXXXXXXXXXXXXTQA-DRVVDLLLRWGADEMKANHNGDKHVPVPLLHFVPRHTADVVGTTVADDEPVLSEGQRKERKERVTRLLANAHVDRTWRRRGWLVLCRSR 1314
MYP+R L + + ++ ATP+QW +W+R P+EHAAA+G+F LV LL AG G +G G GRT+LDAAA GGN +VV+ +L AG PD+ + S +R+ LH +A+ GHEAA R L++AGA+ N +D PN +D G +PLH AAY XXXXXXXXXXXXXXXXXXXXX VNA GYTALH NQ + + V D +VDLLLRWG E+ + G+ P LL +VA+ S ++ ER LLANA DR WRRR WLV+ R+R
Sbjct: 1 MYPRRPVLEGAEVGIFTLLSYGATPEQWREWLRAPLEHAAARGEFVLVEKLLNAGADGGAGWSGCRGRTLLDAAALGGNPDVVTTLLRAGCLPDVNVVSVSSRRSALHLSAVCGHEAAARKLILAGADANRVDPAXXXXXXXXXXXXXXXXXXXXXXXXXXXPNARDLLGRTPLH-RAAYMGQDMVVAVLTDMPSTDKDILDKSGLSPLTVASQRGHLSTVKTLLNAGADVSMRTGHRNSXXXXXXXXXXXXXXXXXXXXXXXVNA-SKHGYTALHAGCAMNQAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMDKTMLHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGN--TPAALL-------------SVAEG----SSSRKAREVERAHVLLANAPADRAWRRRSWLVMLRAR 419
BLAST of mRNA_E-siliculosus-1a_F_contig1039.299.1 vs. uniprot
Match: A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE) HSP 1 Score: 121 bits (303), Expect = 8.350e-27 Identity = 73/170 (42.94%), Postives = 108/170 (63.53%), Query Frame = 1 Query: 1 MYPKREALRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVAALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRAPLHRAALHGHEAATRVLMMAGANVNLLDG-DKRGALALAIRGGHDNVVCSLLLGGASPNGKDKKG 507
++P+R +L E+ +V A+ +QWA+W+R+P+EHAA++G +LV LL+AG +G RG GRT+LDAAA GGN +V+SA++ GA D+ + +R+ LH A GHEAA + L++ GA+VN D K L+ AI+G H +V L +GGA PN +D G
Sbjct: 3 IFPERTSLDGLGSEVFKLVSYGASREQWAEWLRVPLEHAASRGNPNLVERLLQAGADAGAGWRGCRGRTLLDAAALGGNADVMSALIRGGAGADVNKVTVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRDPVAKCSVLSQAIQGSHTQLVNDLPIGGARPNIRDDCG 172
BLAST of mRNA_E-siliculosus-1a_F_contig1039.299.1 vs. uniprot
Match: D7FXM2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXM2_ECTSI) HSP 1 Score: 117 bits (292), Expect = 4.190e-25 Identity = 68/107 (63.55%), Postives = 74/107 (69.16%), Query Frame = 1 Query: 106 VEHAAAQGKFDLVAALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRAPLHRAALHGHEAATRVLMMAGANVNLLDGDKRGALAL 426
+EHAAA G F+LV ALLKAGGTG G+RG GRT+LDAA A PDL RSG K+R+ LHRAALHGHEAA RVLMMAGANV LD DKRG LAL
Sbjct: 17 IEHAAANGNFELVTALLKAGGTGTPGLRGCRGRTLLDAAXXXXXXXXXXXXXXXXATPDLCARSGSKRRSALHRAALHGHEAAARVLMMAGANVGSLDADKRGPLAL 123
BLAST of mRNA_E-siliculosus-1a_F_contig1039.299.1 vs. uniprot
Match: A0A6H5K513_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K513_9PHAE) HSP 1 Score: 119 bits (297), Expect = 7.920e-25 Identity = 68/148 (45.95%), Postives = 95/148 (64.19%), Query Frame = 1 Query: 13 REALRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVAALLKAGGTGASGVRGRGGRTILDAAAKGGNGNVVSAILNAGAKPDLGIRSGKKKRAPLHRAALHGHEAATRVLMMAGANVNLLD-GDKRGALALAIRGGHDNV 453
R L+ E+ +V ATP+QWA+W+R+P+EHAAA G DLV LLKAG G +G RG G RT+LDAA GGN V+SA+L AG PD + + R+ L+++ L +A R L++AGA+VN+ D +K G L A+R G D++
Sbjct: 7 RSLLKGQEVEIFKLVSKGATPEQWAEWLRVPLEHAAASGNLDLVNKLLKAGADGEAGWRGCGDRTLLDAALSGGNAGVMSALLQAGCGPDANVLAPSTGRSVLYQSILSNQKAVARELILAGADVNIKDRAEKAGPLLAAVRAGCDDL 154 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1039.299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1039.299.1 >prot_E-siliculosus-1a_F_contig1039.299.1 ID=prot_E-siliculosus-1a_F_contig1039.299.1|Name=mRNA_E-siliculosus-1a_F_contig1039.299.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=598bp MYPKREALRESCRELVAVVIDDATPKQWADWVRIPVEHAAAQGKFDLVAAback to top mRNA from alignment at E-siliculosus-1a_F_contig1039:3662..9982+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1039.299.1 ID=mRNA_E-siliculosus-1a_F_contig1039.299.1|Name=mRNA_E-siliculosus-1a_F_contig1039.299.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6321bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:3662..9982+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1039:3662..9982+ >mRNA_E-siliculosus-1a_F_contig1039.299.1 ID=mRNA_E-siliculosus-1a_F_contig1039.299.1|Name=mRNA_E-siliculosus-1a_F_contig1039.299.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=3588bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1039:3662..9982+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |