Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match:
A0A6H5JC18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC18_9PHAE)
HSP 1 Score: 293 bits (751), Expect = 6.450e-94
Identity = 181/195 (92.82%), Postives = 183/195 (93.85%), Query Frame = 1
Query: 1 GEGAGVGDGGQEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVFIGRAMHLNPELCFAGDAG---EEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXT--TSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 570
GEGAGVGDGGQEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVF+GRAMHLNPELCFA DA E+ ENASETESPAMDEASDSEGVD XXXXXXXXXXXXXXXXXXXXXXX GAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA
Sbjct: 334 GEGAGVGDGGQEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVFVGRAMHLNPELCFAEDAEDAVEQGENASETESPAMDEASDSEGVDDXXXXXXXXXXXXXXXXXXXXXXXXXXAPGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 528
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match:
A0A6H5K313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K313_9PHAE)
HSP 1 Score: 282 bits (721), Expect = 1.410e-87
Identity = 168/186 (90.32%), Postives = 174/186 (93.55%), Query Frame = 1
Query: 16 VGDGGQEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVFIGRAMHLNPELCFAGDAGEEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXTTS-GAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 570
V DGGQ+FLRRRRVLF LCQNLCSQLNRSQVDPKLTEQCVKNLVF+GRAMHLNPELCFA DA ++EENASETESPAMDE+SDSEG DXXXXXXXXXXXXXXXXXXX X T+ GAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAV VAHLKLMLLPLRRAVLDAEAGGVEHKA
Sbjct: 413 VDDGGQDFLRRRRVLFLLCQNLCSQLNRSQVDPKLTEQCVKNLVFLGRAMHLNPELCFAEDAVKQEENASETESPAMDESSDSEGFDXXXXXXXXXXXXXXXXXXXAGXGKATAPGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVPVAHLKLMLLPLRRAVLDAEAGGVEHKA 598
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match:
D8LFK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK0_ECTSI)
HSP 1 Score: 235 bits (600), Expect = 1.900e-68
Identity = 153/175 (87.43%), Postives = 161/175 (92.00%), Query Frame = 1
Query: 73 QNLCSQL--------NRSQVDPKLTEQCVKNLVFIGRAMHLNPELCFAGDAGEEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXX-TTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 570
Q +CS+L N +QVDPKLT+QCVKNLVF+GRAMHLNPELCFA DAGEEE NAS TESPAM+EASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXX TTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVH+PAVSVAHLKLMLLPLRRAVLDAEAGGVE+KA
Sbjct: 877 QEICSRLIYFHLSTPNHAQVDPKLTDQCVKNLVFVGRAMHLNPELCFAEDAGEEE-NASGTESPAMEEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXATTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHDPAVSVAHLKLMLLPLRRAVLDAEAGGVEYKA 1050
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match:
D8LFJ6_ECTSI (DRIM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ6_ECTSI)
HSP 1 Score: 232 bits (591), Expect = 4.570e-67
Identity = 153/175 (87.43%), Postives = 159/175 (90.86%), Query Frame = 1
Query: 73 QNLCSQL--------NRSQVDPKLTEQCVKNLVFIGRAMHLNPELCFAGDAGEEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXT-TSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 570
Q +CS L + +QVDPKLT+QCVKNLVFIGRAMHLNPELCFA DAGEEE NAS TESPAM+EASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXX TSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVH+PAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA
Sbjct: 3266 QEICSWLIYFHLSIPHLAQVDPKLTDQCVKNLVFIGRAMHLNPELCFAEDAGEEE-NASGTESPAMEEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXXXTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHDPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 3439
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match:
A0A6H5K1M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1M7_9PHAE)
HSP 1 Score: 219 bits (558), Expect = 1.060e-66
Identity = 140/174 (80.46%), Postives = 145/174 (83.33%), Query Frame = 1
Query: 31 QEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVFIGRAMHLNPELCFAGDAGEEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXTTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAG 552
Q+FL RRRVLFRLCQNLCSQLNRSQ CVKNLVFIGRAMHLNPELCFA DA EEEE+AS TESPAMD+ASDSEGVDXXXXXXXXXXXXXXXX TTSGAADPLRWVF R SHMVV KGEARRRAVFSWFLAMVAVHEPAVSVAHL+LMLLP A AE+G
Sbjct: 259 QDFLPRRRVLFRLCQNLCSQLNRSQ--------CVKNLVFIGRAMHLNPELCFAEDAVEEEEDASGTESPAMDDASDSEGVDXXXXXXXXXXXXXXXXLAGGGKA-TTSGAADPLRWVFKRTSHMVVPKGEARRRAVFSWFLAMVAVHEPAVSVAHLELMLLPEAHASAAAESG 423
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match:
A0A6H5KUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI4_9PHAE)
HSP 1 Score: 174 bits (442), Expect = 3.510e-49
Identity = 108/139 (77.70%), Postives = 112/139 (80.58%), Query Frame = 1
Query: 136 KNLVFIGRAMHLNPELCFAGDAGEEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXTTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAG 552
KNLVFIGRAMHLNPELCFA DA EEEE+AS TES AMD+ASDSEGVDXXXXXXXXXXX TTSGAADPLRWVF RMS MVV KGEARRRAVFSWFLAM+ VHEPAVSVAHLKLMLLP A AE+G
Sbjct: 312 KNLVFIGRAMHLNPELCFAEDAVEEEEDASGTESLAMDDASDSEGVDXXXXXXXXXXXDSADYSLAGGGRVTTSGAADPLRWVFKRMSQMVVPKGEARRRAVFSWFLAMMTVHEPAVSVAHLKLMLLPEAHASAAAESG 450
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match:
D7G4A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A0_ECTSI)
HSP 1 Score: 100 bits (249), Expect = 5.810e-24
Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 1
Query: 406 VVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHK 567
VV+KGEARR+ VFSWFL+MVAVH+PAVSVAHLKLMLLPLRRAVLDAEAGGVEHK
Sbjct: 7 VVYKGEARRQTVFSWFLSMVAVHDPAVSVAHLKLMLLPLRRAVLDAEAGGVEHK 60
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match:
A0A7S2DH07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH07_9STRA)
HSP 1 Score: 55.1 bits (131), Expect = 1.310e-5
Identity = 22/51 (43.14%), Postives = 37/51 (72.55%), Query Frame = 1
Query: 31 QEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVFIGRAMHLNPEL 183
++FL R +LF L + C+QL+ ++DP++T+Q +KNL+F+ AMH +P L
Sbjct: 237 EDFLERPGMLFLLSRRHCAQLDHPELDPEMTDQAIKNLIFLVEAMHAHPHL 287
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 8
0 1 Expect = 6.45e-94 / Id = 92.82 Expect = 1.41e-87 / Id = 90.32 Expect = 1.90e-68 / Id = 87.43 Expect = 4.57e-67 / Id = 87.43 Expect = 1.06e-66 / Id = 80.46 Expect = 3.51e-49 / Id = 77.70 Expect = 5.81e-24 / Id = 90.74 Expect = 1.31e-5 / Id = 43.14 Sequence A0A6H5JC18_9PHAE A0A6H5K313_9PHAE D8LFK0_ECTSI D8LFJ6_ECTSI A0A6H5K1M7_9PHAE A0A6H5KUI4_9PHAE D7G4A0_ECTSI A0A7S2DH07_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Start 0 Stop 0 Cds size 570 Model size 572 Exons 2 Hectar predicted targeting category other localisation Taxonomic scope Eukaryota BRITE ko00000,ko03009,ko03036,ko04147,ko04812 Best eggNOG OG NA|NA|NA Best tax level Eukaryota COG Functional cat. S Ec32 ortholog Ec-04_001970.2 Ec32 ortholog description Armadillo-type fold EggNOG OGs KOG1823@1,KOG1823@2759 EggNOG free text desc. maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GOs GO:0000166,GO:0000287,GO:0003674,GO:0005488,GO:0005515,GO:0005524,GO:0008144,GO:0017076,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0033218,GO:0035639,GO:0036094,GO:0042277,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043295,GO:0046872,GO:0046983,GO:0048037,GO:0072341,GO:0097159,GO:0097367,GO:1900750,GO:1901265,GO:1901363,GO:1901681 KEGG ko ko:K14772,ko:K16569 Seed eggNOG ortholog 2880.D8LFK0 Seed ortholog evalue 5.1e-59 Seed ortholog score 234.2
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10385.297.1
>prot_E-siliculosus-1a_F_contig10385.297.1 ID=prot_E-siliculosus-1a_F_contig10385.297.1|Name=mRNA_E-siliculosus-1a_F_contig10385.297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=190bp
GEGAGVGDGGQEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVF back to top mRNA from alignment at E-siliculosus-1a_F_contig10385:1357..2524-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10385.297.1 ID=mRNA_E-siliculosus-1a_F_contig10385.297.1|Name=mRNA_E-siliculosus-1a_F_contig10385.297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1168bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10385:1357..2524- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)GGGGAGGGAGCTGGGGTAGGCGACGGGGGGCAGGAGTTCCTTCGAAGGAG
GCGTGTCCTGTTCCGCCTGTGCCAGAACCTGTGCTCTCAGCTCAACAGGT
CGCAG GTGCGTGTCTTAGGGAGGCAGTGGATGAGAGTGCTGCTGCTGTCG
CGGGGGGGGAGGGCGTGAACGCTTCGTTGTCGTAGGCATGTGTGTGTGCG
CGAAGATGTATGTCGCTGCCCCCCCCCTCCCCCGCTCCATCCGGTGTGTT
TGCCGTGGTTGTGTCTGCGTTCGGTGGAGCAGACGCTGGGATGTTTTTGG
AAGTAGTCACCTGTATCTACACTTTTGAGAAATGTATGGAGATCAAGTAG
GGAGGGGGGGCAGAGAGAGAGAACGCATCTCGTGTGACCTCCAGGCTGAT
TTTTCGTCCGAGAGCGTTTCAAAAGGGCAAATCTGGCGTGGACCATTCGC
GTGGTGCTCAAAGCTCTCCCATAATCTCAAAAGAGAGTCGTCGTGTGCCA
GGGACGCCAGTAGCAGCTTTTTCGGGAAGAATATTTCAAGGATTCTCTTG
GTTGCTTCATTTTCATCTCTCATGTCCCGACTCTTTGCTGCTTCATTTTG
TACAAGGACGCCAGTATCTAGTTTTTTTCAAGAGACATTTTCCAGGAAAG
TTCCTCTAGGTTTTGATTCATTTTCATCTCCCAACTCCCAACCATGCGCA
GGTTGACCCGAAACTGACGGAGCAGTGCGTCAAGAACCTGGTGTTTATCG
GTCGTGCGATGCACCTCAACCCGGAGCTGTGCTTCGCCGGAGACGCCGGC
GAAGAAGAAGAAAACGCCTCTGAGACGGAAAGCCCGGCGATGGACGAAGC
AAGCGACAGCGAGGGGGTTGACGATGACGGCGGAGATGCCGCCGCCGCCG
CCGCCGATTCTGCCGATTCTTCTCCTGCCGGCGGCGGTAAGGCTACCACG
TCCGGTGCCGCAGACCCGTTGAGATGGGTGTTCAACCGCATGTCCCACAT
GGTGGTGCACAAGGGAGAGGCGCGGAGGCGAGCGGTGTTCAGCTGGTTCC
TGGCGATGGTGGCCGTCCACGAGCCAGCCGTGTCCGTGGCCCACCTGAAG
CTCATGCTTCTGCCACTGCGGAGAGCGGTGTTAGACGCCGAGGCGGGTGG
GGTGGAGCACAAGGCT back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10385:1357..2524-
>mRNA_E-siliculosus-1a_F_contig10385.297.1 ID=mRNA_E-siliculosus-1a_F_contig10385.297.1|Name=mRNA_E-siliculosus-1a_F_contig10385.297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10385:1357..2524- (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top