mRNA_E-siliculosus-1a_F_contig10385.297.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match: A0A6H5JC18_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC18_9PHAE) HSP 1 Score: 293 bits (751), Expect = 6.450e-94 Identity = 181/195 (92.82%), Postives = 183/195 (93.85%), Query Frame = 1 Query: 1 GEGAGVGDGGQEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVFIGRAMHLNPELCFAGDAG---EEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXT--TSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 570
GEGAGVGDGGQEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVF+GRAMHLNPELCFA DA E+ ENASETESPAMDEASDSEGVD XXXXXXXXXXXXXXXXXXXXXXX GAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA
Sbjct: 334 GEGAGVGDGGQEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVFVGRAMHLNPELCFAEDAEDAVEQGENASETESPAMDEASDSEGVDDXXXXXXXXXXXXXXXXXXXXXXXXXXAPGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 528
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match: A0A6H5K313_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K313_9PHAE) HSP 1 Score: 282 bits (721), Expect = 1.410e-87 Identity = 168/186 (90.32%), Postives = 174/186 (93.55%), Query Frame = 1 Query: 16 VGDGGQEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVFIGRAMHLNPELCFAGDAGEEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXTTS-GAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 570
V DGGQ+FLRRRRVLF LCQNLCSQLNRSQVDPKLTEQCVKNLVF+GRAMHLNPELCFA DA ++EENASETESPAMDE+SDSEG DXXXXXXXXXXXXXXXXXXX X T+ GAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAV VAHLKLMLLPLRRAVLDAEAGGVEHKA
Sbjct: 413 VDDGGQDFLRRRRVLFLLCQNLCSQLNRSQVDPKLTEQCVKNLVFLGRAMHLNPELCFAEDAVKQEENASETESPAMDESSDSEGFDXXXXXXXXXXXXXXXXXXXAGXGKATAPGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVPVAHLKLMLLPLRRAVLDAEAGGVEHKA 598
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match: D8LFK0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK0_ECTSI) HSP 1 Score: 235 bits (600), Expect = 1.900e-68 Identity = 153/175 (87.43%), Postives = 161/175 (92.00%), Query Frame = 1 Query: 73 QNLCSQL--------NRSQVDPKLTEQCVKNLVFIGRAMHLNPELCFAGDAGEEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXX-TTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 570
Q +CS+L N +QVDPKLT+QCVKNLVF+GRAMHLNPELCFA DAGEEE NAS TESPAM+EASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXX TTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVH+PAVSVAHLKLMLLPLRRAVLDAEAGGVE+KA
Sbjct: 877 QEICSRLIYFHLSTPNHAQVDPKLTDQCVKNLVFVGRAMHLNPELCFAEDAGEEE-NASGTESPAMEEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXATTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHDPAVSVAHLKLMLLPLRRAVLDAEAGGVEYKA 1050
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match: D8LFJ6_ECTSI (DRIM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFJ6_ECTSI) HSP 1 Score: 232 bits (591), Expect = 4.570e-67 Identity = 153/175 (87.43%), Postives = 159/175 (90.86%), Query Frame = 1 Query: 73 QNLCSQL--------NRSQVDPKLTEQCVKNLVFIGRAMHLNPELCFAGDAGEEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXT-TSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 570
Q +CS L + +QVDPKLT+QCVKNLVFIGRAMHLNPELCFA DAGEEE NAS TESPAM+EASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXX TSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVH+PAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA
Sbjct: 3266 QEICSWLIYFHLSIPHLAQVDPKLTDQCVKNLVFIGRAMHLNPELCFAEDAGEEE-NASGTESPAMEEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXXXTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHDPAVSVAHLKLMLLPLRRAVLDAEAGGVEHKA 3439
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match: A0A6H5K1M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1M7_9PHAE) HSP 1 Score: 219 bits (558), Expect = 1.060e-66 Identity = 140/174 (80.46%), Postives = 145/174 (83.33%), Query Frame = 1 Query: 31 QEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVFIGRAMHLNPELCFAGDAGEEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXTTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAG 552
Q+FL RRRVLFRLCQNLCSQLNRSQ CVKNLVFIGRAMHLNPELCFA DA EEEE+AS TESPAMD+ASDSEGVDXXXXXXXXXXXXXXXX TTSGAADPLRWVF R SHMVV KGEARRRAVFSWFLAMVAVHEPAVSVAHL+LMLLP A AE+G
Sbjct: 259 QDFLPRRRVLFRLCQNLCSQLNRSQ--------CVKNLVFIGRAMHLNPELCFAEDAVEEEEDASGTESPAMDDASDSEGVDXXXXXXXXXXXXXXXXLAGGGKA-TTSGAADPLRWVFKRTSHMVVPKGEARRRAVFSWFLAMVAVHEPAVSVAHLELMLLPEAHASAAAESG 423
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match: A0A6H5KUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUI4_9PHAE) HSP 1 Score: 174 bits (442), Expect = 3.510e-49 Identity = 108/139 (77.70%), Postives = 112/139 (80.58%), Query Frame = 1 Query: 136 KNLVFIGRAMHLNPELCFAGDAGEEEENASETESPAMDEASDSEGVDXXXXXXXXXXXXXXXXXXXXXXXXTTSGAADPLRWVFNRMSHMVVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAG 552
KNLVFIGRAMHLNPELCFA DA EEEE+AS TES AMD+ASDSEGVDXXXXXXXXXXX TTSGAADPLRWVF RMS MVV KGEARRRAVFSWFLAM+ VHEPAVSVAHLKLMLLP A AE+G
Sbjct: 312 KNLVFIGRAMHLNPELCFAEDAVEEEEDASGTESLAMDDASDSEGVDXXXXXXXXXXXDSADYSLAGGGRVTTSGAADPLRWVFKRMSQMVVPKGEARRRAVFSWFLAMMTVHEPAVSVAHLKLMLLPEAHASAAAESG 450
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match: D7G4A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A0_ECTSI) HSP 1 Score: 100 bits (249), Expect = 5.810e-24 Identity = 49/54 (90.74%), Postives = 53/54 (98.15%), Query Frame = 1 Query: 406 VVHKGEARRRAVFSWFLAMVAVHEPAVSVAHLKLMLLPLRRAVLDAEAGGVEHK 567
VV+KGEARR+ VFSWFL+MVAVH+PAVSVAHLKLMLLPLRRAVLDAEAGGVEHK
Sbjct: 7 VVYKGEARRQTVFSWFLSMVAVHDPAVSVAHLKLMLLPLRRAVLDAEAGGVEHK 60
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Match: A0A7S2DH07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DH07_9STRA) HSP 1 Score: 55.1 bits (131), Expect = 1.310e-5 Identity = 22/51 (43.14%), Postives = 37/51 (72.55%), Query Frame = 1 Query: 31 QEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVFIGRAMHLNPEL 183
++FL R +LF L + C+QL+ ++DP++T+Q +KNL+F+ AMH +P L
Sbjct: 237 EDFLERPGMLFLLSRRHCAQLDHPELDPEMTDQAIKNLIFLVEAMHAHPHL 287 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10385.297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10385.297.1 >prot_E-siliculosus-1a_F_contig10385.297.1 ID=prot_E-siliculosus-1a_F_contig10385.297.1|Name=mRNA_E-siliculosus-1a_F_contig10385.297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=190bp GEGAGVGDGGQEFLRRRRVLFRLCQNLCSQLNRSQVDPKLTEQCVKNLVFback to top mRNA from alignment at E-siliculosus-1a_F_contig10385:1357..2524- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig10385.297.1 ID=mRNA_E-siliculosus-1a_F_contig10385.297.1|Name=mRNA_E-siliculosus-1a_F_contig10385.297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1168bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10385:1357..2524- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10385:1357..2524- >mRNA_E-siliculosus-1a_F_contig10385.297.1 ID=mRNA_E-siliculosus-1a_F_contig10385.297.1|Name=mRNA_E-siliculosus-1a_F_contig10385.297.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10385:1357..2524- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |