prot_E-siliculosus-1a_F_contig1038.296.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1038.296.1
Unique Nameprot_E-siliculosus-1a_F_contig1038.296.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length422
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: D8LEX7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX7_ECTSI)

HSP 1 Score: 693 bits (1789), Expect = 2.420e-248
Identity = 387/422 (91.71%), Postives = 393/422 (93.13%), Query Frame = 0
Query:    1 MDLCLLRNDPTGSLRYSQEEGLTKRNIERLPQTRYKRPVSGSAQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHGAPSSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGGEAEAPAPITAAAAPGQA-LGGGGPARSGSTRSIRGAIVLPDQGGQPQEGSIVVQPAAAPSYVVVPREYSLGGDGIDEEHPGNGGEGPAGSSTRELASSSARASTTEGLPDDVARATDAAEEKEEIVAEAAEERRGSHKGFSDGRGGVVFGGNTEEFREAXXXXXXXXXXXXXXXASGGAGPRL 421
            MDLCLLRNDPTGSLRYSQEEGLTKR+IERLPQTRYKRPVSG+AQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHG P SSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGGEAEA                   PA SGSTRS RGAIVLPDQGGQPQ GSIVVQPA+APSYVVVPREYSLGGDGIDEE+PGNGGEG AGSSTRELASS+ARASTTEGLPDDVA+ATDA EEKEEIVAEAAEERRGSHKGFSDGRGGVVFGGNTEEFREA  XXXXXXXXXXXX ASGGAGPRL
Sbjct:   84 MDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRPVSGTAQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHGPPGSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGGEAEAXXXXXXXXXXXXXXFXXXXPAGSGSTRSTRGAIVLPDQGGQPQ-GSIVVQPASAPSYVVVPREYSLGGDGIDEEYPGNGGEGLAGSSTRELASSAARASTTEGLPDDVAQATDATEEKEEIVAEAAEERRGSHKGFSDGRGGVVFGGNTEEFREAAAXXXXXXXXXXXXAASGGAGPRL 504          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A6H5KYP0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP0_9PHAE)

HSP 1 Score: 691 bits (1784), Expect = 1.360e-244
Identity = 377/423 (89.13%), Postives = 387/423 (91.49%), Query Frame = 0
Query:    1 MDLCLLRNDPTGSLRYSQEEGLTKRNIERLPQTRYKRPVSGSAQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHGAPSSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGGEAEAPAPITAAAAPGQALGGGGPARSGSTRSIRGAIVLPDQGGQPQEGSIVVQPAAAPSYVVVPREYSLGGDGIDEEHPGNGGEGPAGSSTRELASSSARASTTEGLPDDVARATDAAEEKEEIVAEAAEERRGSHKGFSDGRGGVVFGGNTEEFREAXXXXXXXXXXXXXXXAS--GGAGPRL 421
            MDLCLLRNDPTGSLRYSQEEGLTKR+IERLP+TRYKRPVSGSAQKKG KKTPA+DGKKPD TEAAAAGEEGGVTGSDLHGAP+  T AP+TAVV  AEGGE EGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDR+YRSVS+RLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEG EAEA  PITA AAPGQA GGGGPARSGSTRS RGAIVLPDQGGQPQEGSIVVQPA+APSYVVVPREYSLGG GID EHPGNGGEGP GSS REL SSSARAS TE  PD+VARATDA EEKEEIVAEA EERRGS KGFSDGRGGVVFGGNTEEFREA  XXXXXX       A+  GGAGPRL
Sbjct:  277 MDLCLLRNDPTGSLRYSQEEGLTKRSIERLPETRYKRPVSGSAQKKGGKKTPAADGKKPDGTEAAAAGEEGGVTGSDLHGAPAGRTGAPQTAVVLAAEGGEREGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRIYRSVSNRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGVEAEATTPITADAAPGQAFGGGGPARSGSTRSTRGAIVLPDQGGQPQEGSIVVQPASAPSYVVVPREYSLGG-GIDNEHPGNGGEGPVGSSMRELTSSSARASATERPPDEVARATDATEEKEEIVAEAPEERRGSQKGFSDGRGGVVFGGNTEEFREAEAXXXXXXMAGARNGAAAIGGAGPRL 698          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A835ZK41_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK41_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.620e-14
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 0
Query:  100 GEGEGARDSTED-MCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANV 158
            G+ EG R+   D MCAICL ++E GD+LR++P C H++HK C+DPWLETKA+C  CK  V
Sbjct:  237 GDVEGGREGVGDLMCAICLADFEGGDQLRVVPHCFHQYHKACLDPWLETKAICPLCKQRV 296          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A8J5S5L1_ZIZPA (RING-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S5L1_ZIZPA)

HSP 1 Score: 81.3 bits (199), Expect = 3.520e-13
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0
Query:  113 CAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVE 159
            CA+CL+E+E GD+LR++P C H FH ECIDPWLET+  C  C+AN+E
Sbjct:  128 CAVCLMEFEDGDDLRLLPHCSHAFHPECIDPWLETRVTCPLCRANLE 174          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A3B6TN24_WHEAT (RING-type domain-containing protein n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6TN24_WHEAT)

HSP 1 Score: 77.8 bits (190), Expect = 1.430e-12
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 0
Query:  107 DSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVE 159
            D  E+ C +CL  +E GD LR++P C H FH ECIDPWL+ +A C  C+AN+E
Sbjct:  119 DEEEERCPVCLAVFEEGDNLRLLPHCSHVFHPECIDPWLQARATCPLCRANLE 171          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A0P0YC54_ORYSJ (Os12g0620100 protein n=4 Tax=Oryza TaxID=4527 RepID=A0A0P0YC54_ORYSJ)

HSP 1 Score: 75.1 bits (183), Expect = 1.690e-12
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 0
Query:  113 CAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEAR 161
            CA+CL EYE GDELR +PGCGH FH+ C+D WL  +  C  C+++  AR
Sbjct:   92 CAVCLAEYEDGDELRRLPGCGHAFHRRCVDEWLRRRPTCPVCRSSPPAR 140          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A0E0MPQ0_ORYPU (Uncharacterized protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0MPQ0_ORYPU)

HSP 1 Score: 78.2 bits (191), Expect = 2.290e-12
Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 0
Query:   83 SSSTAAPKTAVVAGA-EGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEAR 161
            S S++AP+ A  A A + G+G G        CA+CL EYE GDELR +PGCGH FH+ C+D WL  +  C  C+++  AR
Sbjct:   70 SCSSSAPEEAAAAAAIDVGDGTG--------CAVCLAEYEDGDELRPLPGCGHAFHRRCVDEWLRRRPTCPVCRSSPPAR 141          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A7S2EA99_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EA99_TRICV)

HSP 1 Score: 74.3 bits (181), Expect = 5.290e-12
Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 0
Query:  101 EGEGARDST----EDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCK 155
            EGEGA  S     ED C ICLV+YE GDE+R +P CGH FHK+C+D WLE    C  C+
Sbjct:    1 EGEGAESSPALEEEDCCPICLVDYEGGDEVRTLP-CGHEFHKDCVDAWLENHTSCPACR 58          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A835F682_9POAL (RING-type E3 ubiquitin transferase n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835F682_9POAL)

HSP 1 Score: 76.6 bits (187), Expect = 8.420e-12
Identity = 40/102 (39.22%), Postives = 53/102 (51.96%), Query Frame = 0
Query:   59 PDDTEAAAAGEEGGVTGSDLHGAPSSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEA 160
            PD+  +AAA +  G++  DL G P    A  K        GGE           CA+CL  ++ GD  R +PGC HRFH +C+DPWL    VC +C+A V A
Sbjct:   39 PDEEMSAAAADAAGLSAEDLDGMPCHEHAGSKA-------GGE-----------CAVCLEAFQDGDRCRALPGCEHRFHAQCVDPWLRKSRVCPFCRAEVVA 122          
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A3B6MIZ0_WHEAT (RING-type domain-containing protein n=2 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6MIZ0_WHEAT)

HSP 1 Score: 73.2 bits (178), Expect = 9.030e-12
Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 0
Query:  110 EDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEAR 161
            E  CA+CL EY  GDELR++PGC H FH+ C+D WL  +  C  C+A+ ++R
Sbjct:   91 ERGCAVCLAEYADGDELRVMPGCAHTFHRRCVDQWLRRRPSCPLCRASSQSR 142          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEX7_ECTSI2.420e-24891.71RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KYP0_9PHAE1.360e-24489.13RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A835ZK41_9STRA1.620e-1456.67RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A8J5S5L1_ZIZPA3.520e-1361.70RING-type domain-containing protein n=1 Tax=Zizani... [more]
A0A3B6TN24_WHEAT1.430e-1252.83RING-type domain-containing protein n=1 Tax=Tritic... [more]
A0A0P0YC54_ORYSJ1.690e-1255.10Os12g0620100 protein n=4 Tax=Oryza TaxID=4527 RepI... [more]
A0A0E0MPQ0_ORYPU2.290e-1246.25Uncharacterized protein n=1 Tax=Oryza punctata Tax... [more]
A0A7S2EA99_TRICV5.290e-1255.93Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A835F682_9POAL8.420e-1239.22RING-type E3 ubiquitin transferase n=1 Tax=Digitar... [more]
A0A3B6MIZ0_WHEAT9.030e-1250.00RING-type domain-containing protein n=2 Tax=Tritic... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 350..370
NoneNo IPR availablePANTHERPTHR45798FAMILY NOT NAMEDcoord: 17..159
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 110..160
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 113..154
e-value: 1.1E-5
score: 35.0
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 111..155
e-value: 1.9E-12
score: 47.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 113..155
score: 10.999
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 81..161
e-value: 5.2E-18
score: 66.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1038contigE-siliculosus-1a_F_contig1038:36375..38453 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1038.296.1mRNA_E-siliculosus-1a_F_contig1038.296.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1038 34576..38456 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1038.296.1 ID=prot_E-siliculosus-1a_F_contig1038.296.1|Name=mRNA_E-siliculosus-1a_F_contig1038.296.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=422bp
MDLCLLRNDPTGSLRYSQEEGLTKRNIERLPQTRYKRPVSGSAQKKGDKK
TPASDGKKPDDTEAAAAGEEGGVTGSDLHGAPSSSTAAPKTAVVAGAEGG
EGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAV
CAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDV
QLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGGEAEAPAPITAA
AAPGQALGGGGPARSGSTRSIRGAIVLPDQGGQPQEGSIVVQPAAAPSYV
VVPREYSLGGDGIDEEHPGNGGEGPAGSSTRELASSSARASTTEGLPDDV
ARATDAAEEKEEIVAEAAEERRGSHKGFSDGRGGVVFGGNTEEFREAAAE
AAAVAGARNGAAASGGAGPRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING