mRNA_E-siliculosus-1a_F_contig1038.296.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: D8LEX7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX7_ECTSI) HSP 1 Score: 695 bits (1793), Expect = 1.120e-239 Identity = 388/423 (91.73%), Postives = 394/423 (93.14%), Query Frame = 1 Query: 1 VMDLCLLRNDPTGSLRYSQEEGLTKRNIERLPQTRYKRPVSGSAQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHGAPSSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGGEAEAPAPITAAAAPGQA-LGGGGPARSGSTRSIRGAIVLPDQGGQPQEGSIVVQPAAAPSYVVVPREYSLGGDGIDEEHPGNGGEGPAGSSTRELASSSARASTTEGLPDDVARATDAAEEKEEIVAEAAEERRGSHKGFSDGRGGVVFGGNTEEFREAXXXXXXXXXXXXXXXASGGAGPRL 1266
VMDLCLLRNDPTGSLRYSQEEGLTKR+IERLPQTRYKRPVSG+AQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHG P SSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGGEAEA PA SGSTRS RGAIVLPDQGGQPQ GSIVVQPA+APSYVVVPREYSLGGDGIDEE+PGNGGEG AGSSTRELASS+ARASTTEGLPDDVA+ATDA EEKEEIVAEAAEERRGSHKGFSDGRGGVVFGGNTEEFREA XXXXXXXXXXXX ASGGAGPRL
Sbjct: 83 VMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRPVSGTAQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHGPPGSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGGEAEAXXXXXXXXXXXXXXFXXXXPAGSGSTRSTRGAIVLPDQGGQPQ-GSIVVQPASAPSYVVVPREYSLGGDGIDEEYPGNGGEGLAGSSTRELASSAARASTTEGLPDDVAQATDATEEKEEIVAEAAEERRGSHKGFSDGRGGVVFGGNTEEFREAAAXXXXXXXXXXXXAASGGAGPRL 504
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A6H5KYP0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP0_9PHAE) HSP 1 Score: 693 bits (1788), Expect = 6.200e-236 Identity = 378/424 (89.15%), Postives = 388/424 (91.51%), Query Frame = 1 Query: 1 VMDLCLLRNDPTGSLRYSQEEGLTKRNIERLPQTRYKRPVSGSAQKKGDKKTPASDGKKPDDTEAAAAGEEGGVTGSDLHGAPSSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRVYRSVSDRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGGEAEAPAPITAAAAPGQALGGGGPARSGSTRSIRGAIVLPDQGGQPQEGSIVVQPAAAPSYVVVPREYSLGGDGIDEEHPGNGGEGPAGSSTRELASSSARASTTEGLPDDVARATDAAEEKEEIVAEAAEERRGSHKGFSDGRGGVVFGGNTEEFREAXXXXXXXXXXXXXXXAS--GGAGPRL 1266
VMDLCLLRNDPTGSLRYSQEEGLTKR+IERLP+TRYKRPVSGSAQKKG KKTPA+DGKKPD TEAAAAGEEGGVTGSDLHGAP+ T AP+TAVV AEGGE EGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDR+YRSVS+RLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEG EAEA PITA AAPGQA GGGGPARSGSTRS RGAIVLPDQGGQPQEGSIVVQPA+APSYVVVPREYSLGG GID EHPGNGGEGP GSS REL SSSARAS TE PD+VARATDA EEKEEIVAEA EERRGS KGFSDGRGGVVFGGNTEEFREA XXXXXX A+ GGAGPRL
Sbjct: 276 VMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPETRYKRPVSGSAQKKGGKKTPAADGKKPDGTEAAAAGEEGGVTGSDLHGAPAGRTGAPQTAVVLAAEGGEREGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEARRTCCDRIYRSVSNRLGINLVAPTTIRFSSSRRTYTNEDVQLAMGPTLPASYGHSEMDYVGSAVAPRQASVDVEAGEGVEAEATTPITADAAPGQAFGGGGPARSGSTRSTRGAIVLPDQGGQPQEGSIVVQPASAPSYVVVPREYSLGG-GIDNEHPGNGGEGPVGSSMRELTSSSARASATERPPDEVARATDATEEKEEIVAEAPEERRGSQKGFSDGRGGVVFGGNTEEFREAEAXXXXXXMAGARNGAAAIGGAGPRL 698
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A835ZK41_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK41_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 7.610e-14 Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 1 Query: 301 GEGEGARDSTED-MCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANV 477
G+ EG R+ D MCAICL ++E GD+LR++P C H++HK C+DPWLETKA+C CK V
Sbjct: 237 GDVEGGREGVGDLMCAICLADFEGGDQLRVVPHCFHQYHKACLDPWLETKAICPLCKQRV 296
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A8J5S5L1_ZIZPA (RING-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5S5L1_ZIZPA) HSP 1 Score: 81.3 bits (199), Expect = 1.700e-12 Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 Query: 340 CAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVE 480
CA+CL+E+E GD+LR++P C H FH ECIDPWLET+ C C+AN+E
Sbjct: 128 CAVCLMEFEDGDDLRLLPHCSHAFHPECIDPWLETRVTCPLCRANLE 174
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A0P0YC54_ORYSJ (Os12g0620100 protein n=4 Tax=Oryza TaxID=4527 RepID=A0A0P0YC54_ORYSJ) HSP 1 Score: 75.1 bits (183), Expect = 5.080e-12 Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 Query: 340 CAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEAR 486
CA+CL EYE GDELR +PGCGH FH+ C+D WL + C C+++ AR
Sbjct: 92 CAVCLAEYEDGDELRRLPGCGHAFHRRCVDEWLRRRPTCPVCRSSPPAR 140
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A3B6TN24_WHEAT (RING-type domain-containing protein n=1 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6TN24_WHEAT) HSP 1 Score: 77.8 bits (190), Expect = 5.280e-12 Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = 1 Query: 322 DSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVE 480
D E+ C +CL +E GD LR++P C H FH ECIDPWL+ +A C C+AN+E
Sbjct: 119 DEEEERCPVCLAVFEEGDNLRLLPHCSHVFHPECIDPWLQARATCPLCRANLE 171
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A0E0MPQ0_ORYPU (Uncharacterized protein n=1 Tax=Oryza punctata TaxID=4537 RepID=A0A0E0MPQ0_ORYPU) HSP 1 Score: 78.2 bits (191), Expect = 9.460e-12 Identity = 37/80 (46.25%), Postives = 50/80 (62.50%), Query Frame = 1 Query: 250 SSSTAAPKTAVVAGA-EGGEGEGARDSTEDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEAR 486
S S++AP+ A A A + G+G G CA+CL EYE GDELR +PGCGH FH+ C+D WL + C C+++ AR
Sbjct: 70 SCSSSAPEEAAAAAAIDVGDGTG--------CAVCLAEYEDGDELRPLPGCGHAFHRRCVDEWLRRRPTCPVCRSSPPAR 141
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A7S2EA99_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EA99_TRICV) HSP 1 Score: 74.3 bits (181), Expect = 1.640e-11 Identity = 33/59 (55.93%), Postives = 39/59 (66.10%), Query Frame = 1 Query: 304 EGEGARDST----EDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCK 468
EGEGA S ED C ICLV+YE GDE+R +P CGH FHK+C+D WLE C C+
Sbjct: 1 EGEGAESSPALEEEDCCPICLVDYEGGDEVRTLP-CGHEFHKDCVDAWLENHTSCPACR 58
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A3B6MIZ0_WHEAT (RING-type domain-containing protein n=2 Tax=Triticum aestivum TaxID=4565 RepID=A0A3B6MIZ0_WHEAT) HSP 1 Score: 73.2 bits (178), Expect = 2.690e-11 Identity = 26/52 (50.00%), Postives = 36/52 (69.23%), Query Frame = 1 Query: 331 EDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEAR 486
E CA+CL EY GDELR++PGC H FH+ C+D WL + C C+A+ ++R
Sbjct: 91 ERGCAVCLAEYADGDELRVMPGCAHTFHRRCVDQWLRRRPSCPLCRASSQSR 142
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Match: A0A8I6WLA5_HORVV (RING-type domain-containing protein n=1 Tax=Hordeum vulgare subsp. vulgare TaxID=112509 RepID=A0A8I6WLA5_HORVV) HSP 1 Score: 72.8 bits (177), Expect = 2.790e-11 Identity = 25/52 (48.08%), Postives = 35/52 (67.31%), Query Frame = 1 Query: 331 EDMCAICLVEYETGDELRIIPGCGHRFHKECIDPWLETKAVCAYCKANVEAR 486
E CA+CL EY GDELR++PGC H FH+ C+D WL + C C+ + ++R
Sbjct: 88 ESGCAVCLAEYADGDELRVLPGCAHAFHRRCVDQWLRRRPSCPLCRTSPQSR 139 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1038.296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1038.296.1 >prot_E-siliculosus-1a_F_contig1038.296.1 ID=prot_E-siliculosus-1a_F_contig1038.296.1|Name=mRNA_E-siliculosus-1a_F_contig1038.296.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=422bp MDLCLLRNDPTGSLRYSQEEGLTKRNIERLPQTRYKRPVSGSAQKKGDKKback to top mRNA from alignment at E-siliculosus-1a_F_contig1038:34576..38456- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1038.296.1 ID=mRNA_E-siliculosus-1a_F_contig1038.296.1|Name=mRNA_E-siliculosus-1a_F_contig1038.296.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3881bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1038:34576..38456- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1038:34576..38456- >mRNA_E-siliculosus-1a_F_contig1038.296.1 ID=mRNA_E-siliculosus-1a_F_contig1038.296.1|Name=mRNA_E-siliculosus-1a_F_contig1038.296.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2532bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1038:34576..38456- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |