Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match:
D7G6M7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M7_ECTSI)
HSP 1 Score: 62.0 bits (149), Expect = 6.840e-10
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2
Query: 71 MIRTSSLCLGLLGFALIMSPGSSGTSSTSCDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTC 265
M + SS LG+LG A+++S ++ + S+S G + + G+GYC NNAECGYDGGDCCECTC
Sbjct: 1 MTKHSSRLLGVLGAAVVLSSVAANSLSSS---GCWDALYGDGYCTPPNNNAECGYDGGDCCECTC 62
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match:
D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)
HSP 1 Score: 62.0 bits (149), Expect = 3.380e-9
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2
Query: 71 MIRTSSLCLGLLGFALIMSPGSSGTSSTSCDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTC 265
M + SS LG+LG A+++S ++ + S+S G + + G+GYC NNAECGYDGGDCCECTC
Sbjct: 1 MTKHSSRLLGVLGAAVVLSSVAANSLSSS---GCWDALYGDGYCTPPNNNAECGYDGGDCCECTC 62
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match:
D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)
HSP 1 Score: 58.9 bits (141), Expect = 3.960e-8
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 2
Query: 56 RDVVVMIRTSS-LCLGLLGFALIM-SPGSSGTSSTS-----CDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTCVD 271
R V++M++TSS LGLLG A+IM S SS ++TS CD+ A GNG C+ N ECG+DGGDCCECTC D
Sbjct: 51 RRVIMMMKTSSNRWLGLLGAAVIMWSSASSVVATTSDQFDACDA---AQDIGNGRCNMGNNIEECGFDGGDCCECTCED 126
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match:
A0A6H5L262_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE)
HSP 1 Score: 55.5 bits (132), Expect = 1.130e-7
Identity = 32/75 (42.67%), Postives = 40/75 (53.33%), Query Frame = 2
Query: 44 RPVNRDVVVMIRTSSLCLGLLGFALIMSPGSSGTSSTSCDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTCV 268
R +R + LC+G + ++GTSS D S G+G CD +N AECGYDGGDCCECTCV
Sbjct: 4 RVSSRSAAATFAATLLCMGTGVHGATTTATNTGTSSVCFDE----SAVGDGNCDRDINFAECGYDGGDCCECTCV 74
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match:
D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)
HSP 1 Score: 55.5 bits (132), Expect = 6.920e-7
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 2
Query: 71 MIRTSSLCLGLLGFALIMSPGSSGTSSTSC-DSGYYASFQGNGYCDNALNNAECGYDGGDCCECTC 265
M + SS LG+LG A I+S S +C + G+ G+GYC NNAECGYDGGDCCECTC
Sbjct: 1 MTKHSSRLLGVLGAAAILS------SVGACWEDGF-----GDGYCQLQNNNAECGYDGGDCCECTC 55
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match:
A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE)
HSP 1 Score: 53.5 bits (127), Expect = 8.850e-7
Identity = 33/65 (50.77%), Postives = 40/65 (61.54%), Query Frame = 2
Query: 71 MIRTSSLCLGLLGFALIMSPGSSGTSSTSCDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTC 265
M + SS LG+LG A+ +S S S S D + G+G+C NNAECGYDGGDCCECTC
Sbjct: 1 MTKHSSRLLGVLGAAVFLS--SVAAYSYSSDRCWEYEI-GDGFCTQHNNNAECGYDGGDCCECTC 62
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match:
D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI)
HSP 1 Score: 52.4 bits (124), Expect = 1.140e-6
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 2
Query: 188 GNGYCDNALNNAECGYDGGDCCECTC 265
GNGYC+ NNA+CGYDGGDCCECTC
Sbjct: 87 GNGYCNCQNNNADCGYDGGDCCECTC 112
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match:
D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)
HSP 1 Score: 54.3 bits (129), Expect = 1.840e-6
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 2
Query: 152 TSCDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTCVD 271
TS D+ Y QG+G C+ N+A CGYDGGDCCEC+CVD
Sbjct: 92 TSSDAVCYEDVQGDGMCNEENNSAACGYDGGDCCECSCVD 131
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match:
A0A6H5K4R2_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE)
HSP 1 Score: 53.9 bits (128), Expect = 2.250e-6
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 2
Query: 170 YYASFQGNGYCDNALNNAECGYDGGDCCECTC 265
Y AS GNG CD+ LNN EC YDGGDCCECTC
Sbjct: 50 YDASRIGNGACDSLLNNEECAYDGGDCCECTC 81
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match:
A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)
HSP 1 Score: 53.5 bits (127), Expect = 3.350e-6
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 2
Query: 161 DSGYYASFQGNGYCDNALNNAECGYDGGDCCECTCVDAL 277
D G Y + G+G+C + NN C YDGGDCCECTCVDA
Sbjct: 66 DGGGYVASIGDGFCSDENNNEVCDYDGGDCCECTCVDAF 104
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90 )
Total hits: 25
0 1 Expect = 6.84e-10 / Id = 50.77 Expect = 3.38e-9 / Id = 50.77 Expect = 3.96e-8 / Id = 51.90 Expect = 1.13e-7 / Id = 42.67 Expect = 6.92e-7 / Id = 51.52 Expect = 8.85e-7 / Id = 50.77 Expect = 1.14e-6 / Id = 80.77 Expect = 1.84e-6 / Id = 60.00 Expect = 2.25e-6 / Id = 75.00 Expect = 3.35e-6 / Id = 58.97 Sequence D7G6M7_ECTSI D7G4F9_ECTSI D8LEP6_ECTSI A0A6H5L262_9PHAE D7FI87_ECTSI A0A6H5K2J7_9PHAE D7FI82_ECTSI D8LSC0_ECTSI A0A6H5K4R2_9PHAE A0A6H5KJK5_9PHAE Pages
back to top
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1038.294.1
>prot_E-siliculosus-1a_F_contig1038.294.1 ID=prot_E-siliculosus-1a_F_contig1038.294.1|Name=mRNA_E-siliculosus-1a_F_contig1038.294.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=69bp
MIRTSSLCLGLLGFALIMSPGSSGTSSTSCDSGYYASFQGNGYCDNALNN back to top mRNA from alignment at E-siliculosus-1a_F_contig1038:25012..26293+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1038.294.1 ID=mRNA_E-siliculosus-1a_F_contig1038.294.1|Name=mRNA_E-siliculosus-1a_F_contig1038.294.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1282bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1038:25012..26293+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)CAGTCTCTACCCGGACCGCGTGCATAGACCACAAGGGCTTTGACGACCCG
TGAATAGGGACGTTGTGGTA ATGATTCGTACTTCCTCTCTCTGCCTCGGT
CTCCTAGGGTTTGCCCTCATCATGTCTCCCGGCAGCAGTGGTACCAGCAG
CACATCCTGCGACTCAGGATATTATGCTTCCTTTCAGGGGAATGGATATT
GTGACAACGCCCTAAACAACGCAGAATGCG GTAAGTGAAATATCGAGAAT
TCATATGACGTTCTAGGTTGGTGACGTGTGTCTACAAGCTACTGATGGTT
TTGGGTTGAGAGGTTACAAGCTGATCCACAACAAGGAACAGAAGGACGAA
GAGTCGGGGGAAAACAGCGAATACCAAACAAAGCTACGCACTTGCCGTGG
GTAGACTAGCCCCTCAAACATACGGGAAATATTCAGAAGTAAATCACACC
TCGAGATGCGACCAAAACTCGGTTCATGTCGGGAAACAGGTCCGCATGAT
ACACGATAGGTGTGAGCCTCTTTCATTTTTTCATTTCGTAGGCTCATCTC
AAGCTTTTTTTCAGGTCGTCTCACACACCGAGAGTGGGCCTGGTCGTCGA
AAATCTAGCGAGAGACAACCCCCCTTTTCGTAGGGGTGGGACGGAACAAT
TCCAAGTTATTTCGTGGTGGCCCTCGGTGGTGTACTTTGCTGTTCCCCAA
GCTCCCAAGCGTGACCAGCGTGACCTTCTCCGATACCGTCCCTCGATTTC
TGTCATTTCTGCTATTTAGCTCGGACTATCCAGGAAAATGCTTACTGCGG
AGTACCTATGTCGGAATGGTTAGTTAGGCATTGTAGAGATCTGGTAGTTT
TGTTGCAGTGTTGCAGTGTTTCCTGTATTGGGTGATATTTAGCGTGTATG
TGACCTAGGTGATCTGAACTGAACGTTGCCTTTTGGTTAACGAAGATAAG
GTCCTGCGAAAAGGGTTTGCGCTGTTGGTTGTGAGGAGGCATAAACAAAA
AAAAACGGATACGGACGAAGGGAAAAGATCGCACTTCGCTGCTGTGCCTT
GATCAGGACCGAGTCCTGAGACAGCGAAGGTTGCCAGACAATTTACTGAC
CCACCCGGGAAGAAGCCGGCAGTCGGTGCGTCTCCTCCTTGACGAAATCC
AGTCAATTGTCACCGCTAGCGTTTTCAAGGGTGCCGGGGATCGACTAGAT
GCGGTCTGATGTGGATAGTTTTTCTTGTCCCTCAGGCTACGACGGCGGCG
ATTGCTGCGAGTGCACCTGTGTCGACGCCTTG back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1038:25012..26293+
>mRNA_E-siliculosus-1a_F_contig1038.294.1 ID=mRNA_E-siliculosus-1a_F_contig1038.294.1|Name=mRNA_E-siliculosus-1a_F_contig1038.294.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1038:25012..26293+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female) back to top