mRNA_E-siliculosus-1a_F_contig1038.294.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1038.294.1
Unique NamemRNA_E-siliculosus-1a_F_contig1038.294.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match: D7G6M7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M7_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 6.840e-10
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2 
Query:   71 MIRTSSLCLGLLGFALIMSPGSSGTSSTSCDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTC 265
            M + SS  LG+LG A+++S  ++ + S+S   G + +  G+GYC    NNAECGYDGGDCCECTC
Sbjct:    1 MTKHSSRLLGVLGAAVVLSSVAANSLSSS---GCWDALYGDGYCTPPNNNAECGYDGGDCCECTC 62
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BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match: D7G4F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F9_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 3.380e-9
Identity = 33/65 (50.77%), Postives = 45/65 (69.23%), Query Frame = 2 
Query:   71 MIRTSSLCLGLLGFALIMSPGSSGTSSTSCDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTC 265
            M + SS  LG+LG A+++S  ++ + S+S   G + +  G+GYC    NNAECGYDGGDCCECTC
Sbjct:    1 MTKHSSRLLGVLGAAVVLSSVAANSLSSS---GCWDALYGDGYCTPPNNNAECGYDGGDCCECTC 62
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BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match: D8LEP6_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP6_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 3.960e-8
Identity = 41/79 (51.90%), Postives = 51/79 (64.56%), Query Frame = 2 
Query:   56 RDVVVMIRTSS-LCLGLLGFALIM-SPGSSGTSSTS-----CDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTCVD 271
            R V++M++TSS   LGLLG A+IM S  SS  ++TS     CD+   A   GNG C+   N  ECG+DGGDCCECTC D
Sbjct:   51 RRVIMMMKTSSNRWLGLLGAAVIMWSSASSVVATTSDQFDACDA---AQDIGNGRCNMGNNIEECGFDGGDCCECTCED 126
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BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match: A0A6H5L262_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L262_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.130e-7
Identity = 32/75 (42.67%), Postives = 40/75 (53.33%), Query Frame = 2 
Query:   44 RPVNRDVVVMIRTSSLCLGLLGFALIMSPGSSGTSSTSCDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTCV 268
            R  +R        + LC+G        +  ++GTSS   D     S  G+G CD  +N AECGYDGGDCCECTCV
Sbjct:    4 RVSSRSAAATFAATLLCMGTGVHGATTTATNTGTSSVCFDE----SAVGDGNCDRDINFAECGYDGGDCCECTCV 74
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BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match: D7FI87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI87_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 6.920e-7
Identity = 34/66 (51.52%), Postives = 41/66 (62.12%), Query Frame = 2 
Query:   71 MIRTSSLCLGLLGFALIMSPGSSGTSSTSC-DSGYYASFQGNGYCDNALNNAECGYDGGDCCECTC 265
            M + SS  LG+LG A I+S      S  +C + G+     G+GYC    NNAECGYDGGDCCECTC
Sbjct:    1 MTKHSSRLLGVLGAAAILS------SVGACWEDGF-----GDGYCQLQNNNAECGYDGGDCCECTC 55
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BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match: A0A6H5K2J7_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 8.850e-7
Identity = 33/65 (50.77%), Postives = 40/65 (61.54%), Query Frame = 2 
Query:   71 MIRTSSLCLGLLGFALIMSPGSSGTSSTSCDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTC 265
            M + SS  LG+LG A+ +S  S    S S D  +     G+G+C    NNAECGYDGGDCCECTC
Sbjct:    1 MTKHSSRLLGVLGAAVFLS--SVAAYSYSSDRCWEYEI-GDGFCTQHNNNAECGYDGGDCCECTC 62
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match: D7FI82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI82_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 1.140e-6
Identity = 21/26 (80.77%), Postives = 23/26 (88.46%), Query Frame = 2 
Query:  188 GNGYCDNALNNAECGYDGGDCCECTC 265
            GNGYC+   NNA+CGYDGGDCCECTC
Sbjct:   87 GNGYCNCQNNNADCGYDGGDCCECTC 112
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 1.840e-6
Identity = 24/40 (60.00%), Postives = 29/40 (72.50%), Query Frame = 2 
Query:  152 TSCDSGYYASFQGNGYCDNALNNAECGYDGGDCCECTCVD 271
            TS D+  Y   QG+G C+   N+A CGYDGGDCCEC+CVD
Sbjct:   92 TSSDAVCYEDVQGDGMCNEENNSAACGYDGGDCCECSCVD 131
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match: A0A6H5K4R2_9PHAE (LNR domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R2_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.250e-6
Identity = 24/32 (75.00%), Postives = 25/32 (78.12%), Query Frame = 2 
Query:  170 YYASFQGNGYCDNALNNAECGYDGGDCCECTC 265
            Y AS  GNG CD+ LNN EC YDGGDCCECTC
Sbjct:   50 YDASRIGNGACDSLLNNEECAYDGGDCCECTC 81
[Close]
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Match: A0A6H5KJK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK5_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 3.350e-6
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 2 
Query:  161 DSGYYASFQGNGYCDNALNNAECGYDGGDCCECTCVDAL 277
            D G Y +  G+G+C +  NN  C YDGGDCCECTCVDA 
Sbjct:   66 DGGGYVASIGDGFCSDENNNEVCDYDGGDCCECTCVDAF 104
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1038.294.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6M7_ECTSI6.840e-1050.77LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G4F9_ECTSI3.380e-950.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LEP6_ECTSI3.960e-851.90Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
A0A6H5L262_9PHAE1.130e-742.67LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI87_ECTSI6.920e-751.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K2J7_9PHAE8.850e-750.77LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FI82_ECTSI1.140e-680.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSC0_ECTSI1.840e-660.00Polymorphic Outer membrane protein G/I family n=3 ... [more]
A0A6H5K4R2_9PHAE2.250e-675.00LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KJK5_9PHAE3.350e-658.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1038contigE-siliculosus-1a_F_contig1038:25012..26293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size207
Model size278
Exons2
Hectar predicted targeting categorysignal peptide
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1038.294.1prot_E-siliculosus-1a_F_contig1038.294.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1038 25082..26293 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.527417-UTR-E-siliculosus-1a_F_contig1038:25011..250811622927540.527417-UTR-E-siliculosus-1a_F_contig1038:25011..25081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1038 25012..25081 +
1696318575.8761806-UTR-E-siliculosus-1a_F_contig1038:25011..250811696318575.8761806-UTR-E-siliculosus-1a_F_contig1038:25011..25081Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1038 25012..25081 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927540.5433738-CDS-E-siliculosus-1a_F_contig1038:25081..252411622927540.5433738-CDS-E-siliculosus-1a_F_contig1038:25081..25241Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1038 25082..25241 +
1696318575.8896427-CDS-E-siliculosus-1a_F_contig1038:25081..252411696318575.8896427-CDS-E-siliculosus-1a_F_contig1038:25081..25241Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1038 25082..25241 +
1622927540.5567276-CDS-E-siliculosus-1a_F_contig1038:26246..262931622927540.5567276-CDS-E-siliculosus-1a_F_contig1038:26246..26293Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1038 26247..26293 +
1696318575.898568-CDS-E-siliculosus-1a_F_contig1038:26246..262931696318575.898568-CDS-E-siliculosus-1a_F_contig1038:26246..26293Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1038 26247..26293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1038.294.1

>prot_E-siliculosus-1a_F_contig1038.294.1 ID=prot_E-siliculosus-1a_F_contig1038.294.1|Name=mRNA_E-siliculosus-1a_F_contig1038.294.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=69bp
MIRTSSLCLGLLGFALIMSPGSSGTSSTSCDSGYYASFQGNGYCDNALNN
AECGYDGGDCCECTCVDAL
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mRNA from alignment at E-siliculosus-1a_F_contig1038:25012..26293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1038.294.1 ID=mRNA_E-siliculosus-1a_F_contig1038.294.1|Name=mRNA_E-siliculosus-1a_F_contig1038.294.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1282bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1038:25012..26293+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CAGTCTCTACCCGGACCGCGTGCATAGACCACAAGGGCTTTGACGACCCG
TGAATAGGGACGTTGTGGTAATGATTCGTACTTCCTCTCTCTGCCTCGGT
CTCCTAGGGTTTGCCCTCATCATGTCTCCCGGCAGCAGTGGTACCAGCAG
CACATCCTGCGACTCAGGATATTATGCTTCCTTTCAGGGGAATGGATATT
GTGACAACGCCCTAAACAACGCAGAATGCGGTAAGTGAAATATCGAGAAT
TCATATGACGTTCTAGGTTGGTGACGTGTGTCTACAAGCTACTGATGGTT
TTGGGTTGAGAGGTTACAAGCTGATCCACAACAAGGAACAGAAGGACGAA
GAGTCGGGGGAAAACAGCGAATACCAAACAAAGCTACGCACTTGCCGTGG
GTAGACTAGCCCCTCAAACATACGGGAAATATTCAGAAGTAAATCACACC
TCGAGATGCGACCAAAACTCGGTTCATGTCGGGAAACAGGTCCGCATGAT
ACACGATAGGTGTGAGCCTCTTTCATTTTTTCATTTCGTAGGCTCATCTC
AAGCTTTTTTTCAGGTCGTCTCACACACCGAGAGTGGGCCTGGTCGTCGA
AAATCTAGCGAGAGACAACCCCCCTTTTCGTAGGGGTGGGACGGAACAAT
TCCAAGTTATTTCGTGGTGGCCCTCGGTGGTGTACTTTGCTGTTCCCCAA
GCTCCCAAGCGTGACCAGCGTGACCTTCTCCGATACCGTCCCTCGATTTC
TGTCATTTCTGCTATTTAGCTCGGACTATCCAGGAAAATGCTTACTGCGG
AGTACCTATGTCGGAATGGTTAGTTAGGCATTGTAGAGATCTGGTAGTTT
TGTTGCAGTGTTGCAGTGTTTCCTGTATTGGGTGATATTTAGCGTGTATG
TGACCTAGGTGATCTGAACTGAACGTTGCCTTTTGGTTAACGAAGATAAG
GTCCTGCGAAAAGGGTTTGCGCTGTTGGTTGTGAGGAGGCATAAACAAAA
AAAAACGGATACGGACGAAGGGAAAAGATCGCACTTCGCTGCTGTGCCTT
GATCAGGACCGAGTCCTGAGACAGCGAAGGTTGCCAGACAATTTACTGAC
CCACCCGGGAAGAAGCCGGCAGTCGGTGCGTCTCCTCCTTGACGAAATCC
AGTCAATTGTCACCGCTAGCGTTTTCAAGGGTGCCGGGGATCGACTAGAT
GCGGTCTGATGTGGATAGTTTTTCTTGTCCCTCAGGCTACGACGGCGGCG
ATTGCTGCGAGTGCACCTGTGTCGACGCCTTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1038:25012..26293+

>mRNA_E-siliculosus-1a_F_contig1038.294.1 ID=mRNA_E-siliculosus-1a_F_contig1038.294.1|Name=mRNA_E-siliculosus-1a_F_contig1038.294.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1038:25012..26293+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATTCGTACTTCCTCTCTCTGCCTCGGTCTCCTAGGGTTTGCCCTCAT
CATGTCTCCCGGCAGCAGTGGTACCAGCAGCACATCCTGCGACTCAGGAT
ATTATGCTTCCTTTCAGGGGAATGGATATTGTGACAACGCCCTAAACAAC
GCAGAATGCGATGATTCGTACTTCCTCTCTCTGCCTCGGTCTCCTAGGGT
TTGCCCTCATCATGTCTCCCGGCAGCAGTGGTACCAGCAGCACATCCTGC
GACTCAGGATATTATGCTTCCTTTCAGGGGAATGGATATTGTGACAACGC
CCTAAACAACGCAGAATGCGGCTACGACGGCGGCGATTGCTGCGAGTGCA
CCTGTGTCGACGCCTTGGCTACGACGGCGGCGATTGCTGCGAGTGCACCT
GTGTCGACGCCTTG
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