prot_E-siliculosus-1a_F_contig1504.2936.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1504.2936.1
Unique Nameprot_E-siliculosus-1a_F_contig1504.2936.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length1135
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1504.2936.1 vs. uniprot
Match: A0A6H5KDJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ9_9PHAE)

HSP 1 Score: 1620 bits (4195), Expect = 0.000e+0
Identity = 955/1137 (83.99%), Postives = 980/1137 (86.19%), Query Frame = 0 
Query:    1 MAVTSDRAAAPCRRRRESRRMQQSSMTLGLCALLRPRRGSAWGGGHVVVEGWRHPVGPFIQPQRQQQQNGLDHSLRHRFDATFSGHSSGGCPRRGNRRPRVLMSSVAASDXXXXXXXXXXXXXXXXXSSPFPEGEDATALPRPLPPLLPPAPSTGLVD---VINSAATLSEAARSSEANNINTSSASEAQGRRRARGPPQRRDEKQNEEKDVCQENQRGPFTSQLEQQXXXXXXXXXXXXXXXXXKAQEMRRLGKKGKWREALEVLRSIPGPRRQTQEYVAAIAACDFAREPRQALRVHALMVQQGLKPTPESVLLVVRGLLQAGDANTALRVFRSSGVGIRGRRYTPGTTAADSASTMNALYAVVIRAAHRAGDWRQAVVLYREMEAVKPGPSAATATAVFLACYAEQEYAAAVSFASDALRPPPWEEVTRRRVLMNKIIVACGRAGPDHYRQALDTFEDLDRTIGADGYTLTAVIDVLRRLGDWRRALALLDRLNKLGVTANRGLRTSVNAVLSAMGPDNYRRARELVVKATVEWGVDGDVVTYGTLLLLASARLPPPTXXXXXXXXXXXXXXXXXXXXXVPPASAYPAGVPFGGEGGEEEESGQWETVDVLRSAVAAREVPSEACLDMVLFGLARDGLWEEATAFVEAIGQAGLRVSRHQREALLSALSNGERWTGVVAMVKSMLVDLEVVDNATAGLAMKAYAKLGLDTHWRSALSVLKQAQRASRGGPRVVAADVLDGSAWRCLLAGLASEGLHEEAGAVMQAMPEAGVRVDKDSTAAVVLAAYKAGDHAAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRLPGEADGSGGEEELNGLARARGRGEDGGRDEPAGLRRDTTAAAKADRALSLFEEMRAREVPMNGVTYAIVICALLRAEREDEVLRLWTLAWSDPSTKKLRTDMSNRVLGICKEQRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYWAAMEACEREGATAWRDALALVDKRDGSPLPPDDLFAEAGAVLLQQAAALGISDAVEAASTRVWEKREKNKSNGXXXXXXXXXXXXXXXXXXXXXXXXAVDQRATSAD 1134
            MAVTSDRAAAPCRRRRESRRMQ SSMTLGLCALLRPRRGSAWGGGHVVVEGWRHPVGPFIQPQRQQQQ  LD SLRHRFDATFS HSSGGCPRRGNRRPRVLMSSVAAS XXXXXXXXXXXXXXXX SSPFPEGEDA ALPRPLPPLLPPAPSTG ++      SAATLSEAARSSEANNINT                    E Q E+KDVCQENQ G  TSQLEQ       XXXXXXXXXX KAQEMR+LGKKGKWREALEVLRSIPGP RQ QEYVAAIAACDFAREPRQALRVH LMVQQGL+PTPESVLLVVRGLLQAGDA TALRVFRSSGVGIRGR Y  G TA DSASTMNALYAVVIRAA +AGDWR AVVLYREMEAVKPGPSAATATAVFLACYAEQEYAAA SFASDALRPP WEEVTRRRVLMNKIIVACGRAGPD+Y+QALDTFEDLDRTIGADGYTLTAVIDVLRR+GDWRRALALLDRL +LGVTANRGLRTSVNAVLSAMGPDNYRRARELV KATVEWGVDGDVVTYGTLLLLASARLPPP                      VPP SAYPA  PFGGEGG+EEESGQWETV+V R AVAA+EVPSEACLDMV+FGLARDGLWEEATAFVEAIGQAGL+     REALLSALSNGE+W GVVA+VKSMLVDLEVVDNAT GLAMKAYAKLGL+THWRSALSV+KQAQRASRG  RVVAADVLDGSAWRCLLAGLASEGLHEEAG VMQAM EA VRVDKDSTAAVVLAAYKAGDHAAAI                                    ILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRL  EADGSGGEEELNGL RAR R EDG RDEPAGL RDTTAAAKADRALSLFEEM AREVPMNGVTYAIVICALLRAERED+VLRLWTLAWSDP TKKLRTDMSNR LGICK+QRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYW AMEACEREGATAWRDALALVDKR+ SPLPPDD F+EAGA LLQQAAALG+SDAV+AASTRVWEKREK     XXXXXXXXXXXXXXXXXXXXXXXXAVDQRATSAD
Sbjct:   26 MAVTSDRAAAPCRRRRESRRMQHSSMTLGLCALLRPRRGSAWGGGHVVVEGWRHPVGPFIQPQRQQQQKVLDDSLRHRFDATFSRHSSGGCPRRGNRRPRVLMSSVAASXXXXXXXXXXXXXXXXX-SSPFPEGEDAAALPRPLPPLLPPAPSTGQLNGGVSTTSAATLSEAARSSEANNINTXXXXXXXXXXXXXXXXXXXXENQKEDKDVCQENQWGVSTSQLEQ-------XXXXXXXXXXAKAQEMRQLGKKGKWREALEVLRSIPGPSRQKQEYVAAIAACDFAREPRQALRVHGLMVQQGLEPTPESVLLVVRGLLQAGDATTALRVFRSSGVGIRGRPYKAGRTADDSASTMNALYAVVIRAAQKAGDWRLAVVLYREMEAVKPGPSAATATAVFLACYAEQEYAAAASFASDALRPP-WEEVTRRRVLMNKIIVACGRAGPDNYQQALDTFEDLDRTIGADGYTLTAVIDVLRRVGDWRRALALLDRLTELGVTANRGLRTSVNAVLSAMGPDNYRRARELVEKATVEWGVDGDVVTYGTLLLLASARLPPPAPLGATGTPSLAPAAAAAAA--VPPGSAYPADGPFGGEGGQEEESGQWETVNVFRWAVAAKEVPSEACLDMVMFGLARDGLWEEATAFVEAIGQAGLK-----REALLSALSNGEQWAGVVALVKSMLVDLEVVDNATVGLAMKAYAKLGLETHWRSALSVIKQAQRASRGRSRVVAADVLDGSAWRCLLAGLASEGLHEEAGVVMQAMAEARVRVDKDSTAAVVLAAYKAGDHAAAIAWVDRLDRAGLPVSRNGYTAGVNACCALGKPDAAISILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRLTEEADGSGGEEELNGLFRARERREDGERDEPAGLIRDTTAAAKADRALSLFEEMWAREVPMNGVTYAIVICALLRAEREDQVLRLWTLAWSDPRTKKLRTDMSNRALGICKDQRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYWVAMEACEREGATAWRDALALVDKRNRSPLPPDDSFSEAGAGLLQQAAALGVSDAVQAASTRVWEKREKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDQRATSAD 1146
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BLAST of mRNA_E-siliculosus-1a_F_contig1504.2936.1 vs. uniprot
Match: D7FVZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVZ5_ECTSI)

HSP 1 Score: 1073 bits (2775), Expect = 0.000e+0
Identity = 659/705 (93.48%), Postives = 673/705 (95.46%), Query Frame = 0 
Query:  434 MNKIIVACGRAGPDHYRQALDTFEDLDRTIGADGYTLTAVIDVLRRLGDWRRALALLDRLNKLGVTANRGLRTSVNAVLSAMGPDNYRRARELVVKATVEWGVDGDVVTYGTLLLLASARLPPP----TXXXXXXXXXXXXXXXXXXXXXVPPASAYPAGVPFGGEGGEEEESGQWETVDVLRSAVAAREVPSEACLDMVLFGLARDGLWEEATAFVEAIGQAGLRVSRHQREALLSALSNGERWTGVVAMVKSMLVDLEVVDNATAGLAMKAYAKLGLDTHWRSALSVLKQAQRASRGGPRVVAADVLDGSAWRCLLAGLASEGLHEEAGAVMQAMPEAGVRVDKDSTAAVVLAAYKAGDHAAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRLPGEADGSGGEEELNGLARARGRGEDGGRDEPAGLRRDTTAAAKADRALSLFEEMRAREVPMNGVTYAIVICALLRAEREDEVLRLWTLAWSDPSTKKLRTDMSNRVLGICKEQRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYWAAMEACEREGATAWRDALALVDKRDGSPLPPDDLFAEAGAVLLQQAAALGISDAVEAASTRVWEKREKNKSNGXXXXXXXXXXXXXXXXXXXXXXXXAVDQRATSAD 1134
            MNKIIVACGRAGPDHYRQALDTFEDLDRTIGADGYTLTAVIDVLRRLGDWRRALALLDRLN+LGVTANRGLRTSVNAVLSAMGPDNY RARELVVKATVEWGVDGDVVTYGTLLLLASARLPPP    +  XXXXXXXXXXXXXXXXXXXVP ASAYPAG PFGGEGGEEEESGQWETVDVLR AVAA+EVPSEACLDMV+FGLARDGLWEEATAFVEAIG AGL+VSRHQREALLSALSNGERW GVVA+ KSMLVDL VVDNATAGLAMKAYAKLGL+THWRSALSV+K+AQRASRGG RVVAADVLDGSAWRCLLAGLASEGLHEEAGAVMQAMPEAGV VDKDSTAAVVLAAYKAGDHAA  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRLP EADGSGGE ELNGL+ ARGRGEDGGRDEPAGLRRDTTAAAKADRALSLFEEM  REVPMNGVTYAIVICALLRAEREDEVLRLWTLAWSDPSTKKLR DMSNRVLGICKEQRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYWAAMEACEREGATAWRDALALVDKR+GSPLPPDDLF+EAGA LLQQAAALGISDAV+AASTRVWEK+E      XXXXXXXXXXXXXXXXXXXXXXXXAVDQR TSAD
Sbjct:    1 MNKIIVACGRAGPDHYRQALDTFEDLDRTIGADGYTLTAVIDVLRRLGDWRRALALLDRLNELGVTANRGLRTSVNAVLSAMGPDNYHRARELVVKATVEWGVDGDVVTYGTLLLLASARLPPPAPLGSAGXXXXXXXXXXXXXXXXXXXVPRASAYPAGGPFGGEGGEEEESGQWETVDVLRWAVAAKEVPSEACLDMVVFGLARDGLWEEATAFVEAIGLAGLKVSRHQREALLSALSNGERWAGVVALAKSMLVDLNVVDNATAGLAMKAYAKLGLETHWRSALSVMKKAQRASRGGSRVVAADVLDGSAWRCLLAGLASEGLHEEAGAVMQAMPEAGVMVDKDSTAAVVLAAYKAGDHAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRLPEEADGSGGEGELNGLSHARGRGEDGGRDEPAGLRRDTTAAAKADRALSLFEEMWTREVPMNGVTYAIVICALLRAEREDEVLRLWTLAWSDPSTKKLRRDMSNRVLGICKEQRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYWAAMEACEREGATAWRDALALVDKRNGSPLPPDDLFSEAGAGLLQQAAALGISDAVQAASTRVWEKQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDQRGTSAD 705
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1504.2936.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KDJ9_9PHAE0.000e+083.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FVZ5_ECTSI0.000e+093.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 219..250
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 151..411
coord: 658..856
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..1134
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 35..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 27..34
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..41
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 776..864
e-value: 2.2E-10
score: 42.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 425..554
e-value: 6.2E-10
score: 40.9
coord: 239..424
e-value: 7.4E-17
score: 63.7
coord: 593..728
e-value: 5.9E-7
score: 31.1
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 914..1107
e-value: 1.6E-7
score: 33.2
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 469..498
e-value: 0.16
score: 12.3
coord: 742..771
e-value: 0.3
score: 11.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 799..854
e-value: 8.8E-5
score: 22.5
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 813..844
e-value: 0.0011
score: 17.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 356..390
score: 7.487
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 272..306
score: 7.322
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 809..843
score: 9.021
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 774..808
score: 5.744
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 466..500
score: 8.944
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 622..656
score: 6.851
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 943..973
score: 6.051
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 430..462
score: 5.393
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 739..773
score: 8.89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1504contigE-siliculosus-1a_F_contig1504:11015..18624 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1504.2936.1mRNA_E-siliculosus-1a_F_contig1504.2936.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1504 11015..20389 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1504.2936.1 ID=prot_E-siliculosus-1a_F_contig1504.2936.1|Name=mRNA_E-siliculosus-1a_F_contig1504.2936.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1135bp
MAVTSDRAAAPCRRRRESRRMQQSSMTLGLCALLRPRRGSAWGGGHVVVE
GWRHPVGPFIQPQRQQQQNGLDHSLRHRFDATFSGHSSGGCPRRGNRRPR
VLMSSVAASDSGSNSGGSMNTAAAAAASSPFPEGEDATALPRPLPPLLPP
APSTGLVDVINSAATLSEAARSSEANNINTSSASEAQGRRRARGPPQRRD
EKQNEEKDVCQENQRGPFTSQLEQQQQQQQQQQQQQQQEQQAKAQEMRRL
GKKGKWREALEVLRSIPGPRRQTQEYVAAIAACDFAREPRQALRVHALMV
QQGLKPTPESVLLVVRGLLQAGDANTALRVFRSSGVGIRGRRYTPGTTAA
DSASTMNALYAVVIRAAHRAGDWRQAVVLYREMEAVKPGPSAATATAVFL
ACYAEQEYAAAVSFASDALRPPPWEEVTRRRVLMNKIIVACGRAGPDHYR
QALDTFEDLDRTIGADGYTLTAVIDVLRRLGDWRRALALLDRLNKLGVTA
NRGLRTSVNAVLSAMGPDNYRRARELVVKATVEWGVDGDVVTYGTLLLLA
SARLPPPTPLGAAGAPSPAAAAAAAAAAAVPPASAYPAGVPFGGEGGEEE
ESGQWETVDVLRSAVAAREVPSEACLDMVLFGLARDGLWEEATAFVEAIG
QAGLRVSRHQREALLSALSNGERWTGVVAMVKSMLVDLEVVDNATAGLAM
KAYAKLGLDTHWRSALSVLKQAQRASRGGPRVVAADVLDGSAWRCLLAGL
ASEGLHEEAGAVMQAMPEAGVRVDKDSTAAVVLAAYKAGDHAAAIAWVDR
LDRAGVPVSRNGYTAAVNACCALGKPDAAISILGMMLEGRLVPTASVYNA
VLESICPASEGGYSARVRLRDSSPALSGGRLPGEADGSGGEEELNGLARA
RGRGEDGGRDEPAGLRRDTTAAAKADRALSLFEEMRAREVPMNGVTYAIV
ICALLRAEREDEVLRLWTLAWSDPSTKKLRTDMSNRVLGICKEQRRGALA
VRLLQLGARLSPKGLNDVAWPGPGPYWAAMEACEREGATAWRDALALVDK
RDGSPLPPDDLFAEAGAVLLQQAAALGISDAVEAASTRVWEKREKNKSNG
SGGGGGRRVVRFRAAAAAAAAASAAVDQRATSAD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf