mRNA_E-siliculosus-1a_F_contig1504.2936.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1504.2936.1 vs. uniprot
Match: A0A6H5KDJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ9_9PHAE) HSP 1 Score: 1620 bits (4194), Expect = 0.000e+0 Identity = 955/1137 (83.99%), Postives = 980/1137 (86.19%), Query Frame = 1
Query: 1 MAVTSDRAAAPCRRRRESRRMQQSSMTLGLCALLRPRRGSAWGGGHVVVEGWRHPVGPFIQPQRQQQQNGLDHSLRHRFDATFSGHSSGGCPRRGNRRPRVLMSSVAASDXXXXXXXXXXXXXXXXXSSPFPEGEDATALPRPLPPLLPPAPSTGLVD---VINSAATLSEAARSSEANNINTSSASEAQGRRRARGPPQRRDEKQNEEKDVCQENQRGPFTSQLEQQXXXXXXXXXXXXXXXXXKAQEMRRLGKKGKWREALEVLRSIPGPRRQTQEYVAAIAACDFAREPRQALRVHALMVQQGLKPTPESVLLVVRGLLQAGDANTALRVFRSSGVGIRGRRYTPGTTAADSASTMNALYAVVIRAAHRAGDWRQAVVLYREMEAVKPGPSAATATAVFLACYAEQEYAAAVSFASDALRPPPWEEVTRRRVLMNKIIVACGRAGPDHYRQALDTFEDLDRTIGADGYTLTAVIDVLRRLGDWRRALALLDRLNKLGVTANRGLRTSVNAVLSAMGPDNYRRARELVVKATVEWGVDGDVVTYGTLLLLASARLPPPTXXXXXXXXXXXXXXXXXXXXXVPPASAYPAGVPFGGEGGEEEESGQWETVDVLRSAVAAREVPSEACLDMVLFGLARDGLWEEATAFVEAIGQAGLRVSRHQREALLSALSNGERWTGVVAMVKSMLVDLEVVDNATAGLAMKAYAKLGLDTHWRSALSVLKQAQRASRGGPRVVAADVLDGSAWRCLLAGLASEGLHEEAGAVMQAMPEAGVRVDKDSTAAVVLAAYKAGDHAAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRLPGEADGSGGEEELNGLARARGRGEDGGRDEPAGLRRDTTAAAKADRALSLFEEMRAREVPMNGVTYAIVICALLRAEREDEVLRLWTLAWSDPSTKKLRTDMSNRVLGICKEQRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYWAAMEACEREGATAWRDALALVDKRDGSPLPPDDLFAEAGAVLLQQAAALGISDAVEAASTRVWEKREKNKSNGXXXXXXXXXXXXXXXXXXXXXXXXAVDQRATSAD 3402
MAVTSDRAAAPCRRRRESRRMQ SSMTLGLCALLRPRRGSAWGGGHVVVEGWRHPVGPFIQPQRQQQQ LD SLRHRFDATFS HSSGGCPRRGNRRPRVLMSSVAAS XXXXXXXXXXXXXXXX SSPFPEGEDA ALPRPLPPLLPPAPSTG ++ SAATLSEAARSSEANNINT E Q E+KDVCQENQ G TSQLEQ XXXXXXXXXX KAQEMR+LGKKGKWREALEVLRSIPGP RQ QEYVAAIAACDFAREPRQALRVH LMVQQGL+PTPESVLLVVRGLLQAGDA TALRVFRSSGVGIRGR Y G TA DSASTMNALYAVVIRAA +AGDWR AVVLYREMEAVKPGPSAATATAVFLACYAEQEYAAA SFASDALRPP WEEVTRRRVLMNKIIVACGRAGPD+Y+QALDTFEDLDRTIGADGYTLTAVIDVLRR+GDWRRALALLDRL +LGVTANRGLRTSVNAVLSAMGPDNYRRARELV KATVEWGVDGDVVTYGTLLLLASARLPPP VPP SAYPA PFGGEGG+EEESGQWETV+V R AVAA+EVPSEACLDMV+FGLARDGLWEEATAFVEAIGQAGL+ REALLSALSNGE+W GVVA+VKSMLVDLEVVDNAT GLAMKAYAKLGL+THWRSALSV+KQAQRASRG RVVAADVLDGSAWRCLLAGLASEGLHEEAG VMQAM EA VRVDKDSTAAVVLAAYKAGDHAAAI ILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRL EADGSGGEEELNGL RAR R EDG RDEPAGL RDTTAAAKADRALSLFEEM AREVPMNGVTYAIVICALLRAERED+VLRLWTLAWSDP TKKLRTDMSNR LGICK+QRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYW AMEACEREGATAWRDALALVDKR+ SPLPPDD F+EAGA LLQQAAALG+SDAV+AASTRVWEKREK XXXXXXXXXXXXXXXXXXXXXXXXAVDQRATSAD
Sbjct: 26 MAVTSDRAAAPCRRRRESRRMQHSSMTLGLCALLRPRRGSAWGGGHVVVEGWRHPVGPFIQPQRQQQQKVLDDSLRHRFDATFSRHSSGGCPRRGNRRPRVLMSSVAASXXXXXXXXXXXXXXXXX-SSPFPEGEDAAALPRPLPPLLPPAPSTGQLNGGVSTTSAATLSEAARSSEANNINTXXXXXXXXXXXXXXXXXXXXENQKEDKDVCQENQWGVSTSQLEQ-------XXXXXXXXXXAKAQEMRQLGKKGKWREALEVLRSIPGPSRQKQEYVAAIAACDFAREPRQALRVHGLMVQQGLEPTPESVLLVVRGLLQAGDATTALRVFRSSGVGIRGRPYKAGRTADDSASTMNALYAVVIRAAQKAGDWRLAVVLYREMEAVKPGPSAATATAVFLACYAEQEYAAAASFASDALRPP-WEEVTRRRVLMNKIIVACGRAGPDNYQQALDTFEDLDRTIGADGYTLTAVIDVLRRVGDWRRALALLDRLTELGVTANRGLRTSVNAVLSAMGPDNYRRARELVEKATVEWGVDGDVVTYGTLLLLASARLPPPAPLGATGTPSLAPAAAAAAA--VPPGSAYPADGPFGGEGGQEEESGQWETVNVFRWAVAAKEVPSEACLDMVMFGLARDGLWEEATAFVEAIGQAGLK-----REALLSALSNGEQWAGVVALVKSMLVDLEVVDNATVGLAMKAYAKLGLETHWRSALSVIKQAQRASRGRSRVVAADVLDGSAWRCLLAGLASEGLHEEAGVVMQAMAEARVRVDKDSTAAVVLAAYKAGDHAAAIAWVDRLDRAGLPVSRNGYTAGVNACCALGKPDAAISILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRLTEEADGSGGEEELNGLFRARERREDGERDEPAGLIRDTTAAAKADRALSLFEEMWAREVPMNGVTYAIVICALLRAEREDQVLRLWTLAWSDPRTKKLRTDMSNRALGICKDQRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYWVAMEACEREGATAWRDALALVDKRNRSPLPPDDSFSEAGAGLLQQAAALGVSDAVQAASTRVWEKREKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDQRATSAD 1146
BLAST of mRNA_E-siliculosus-1a_F_contig1504.2936.1 vs. uniprot
Match: D7FVZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVZ5_ECTSI) HSP 1 Score: 1073 bits (2774), Expect = 0.000e+0 Identity = 659/705 (93.48%), Postives = 673/705 (95.46%), Query Frame = 1
Query: 1300 MNKIIVACGRAGPDHYRQALDTFEDLDRTIGADGYTLTAVIDVLRRLGDWRRALALLDRLNKLGVTANRGLRTSVNAVLSAMGPDNYRRARELVVKATVEWGVDGDVVTYGTLLLLASARLPPP----TXXXXXXXXXXXXXXXXXXXXXVPPASAYPAGVPFGGEGGEEEESGQWETVDVLRSAVAAREVPSEACLDMVLFGLARDGLWEEATAFVEAIGQAGLRVSRHQREALLSALSNGERWTGVVAMVKSMLVDLEVVDNATAGLAMKAYAKLGLDTHWRSALSVLKQAQRASRGGPRVVAADVLDGSAWRCLLAGLASEGLHEEAGAVMQAMPEAGVRVDKDSTAAVVLAAYKAGDHAAAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRLPGEADGSGGEEELNGLARARGRGEDGGRDEPAGLRRDTTAAAKADRALSLFEEMRAREVPMNGVTYAIVICALLRAEREDEVLRLWTLAWSDPSTKKLRTDMSNRVLGICKEQRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYWAAMEACEREGATAWRDALALVDKRDGSPLPPDDLFAEAGAVLLQQAAALGISDAVEAASTRVWEKREKNKSNGXXXXXXXXXXXXXXXXXXXXXXXXAVDQRATSAD 3402
MNKIIVACGRAGPDHYRQALDTFEDLDRTIGADGYTLTAVIDVLRRLGDWRRALALLDRLN+LGVTANRGLRTSVNAVLSAMGPDNY RARELVVKATVEWGVDGDVVTYGTLLLLASARLPPP + XXXXXXXXXXXXXXXXXXXVP ASAYPAG PFGGEGGEEEESGQWETVDVLR AVAA+EVPSEACLDMV+FGLARDGLWEEATAFVEAIG AGL+VSRHQREALLSALSNGERW GVVA+ KSMLVDL VVDNATAGLAMKAYAKLGL+THWRSALSV+K+AQRASRGG RVVAADVLDGSAWRCLLAGLASEGLHEEAGAVMQAMPEAGV VDKDSTAAVVLAAYKAGDHAA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRLP EADGSGGE ELNGL+ ARGRGEDGGRDEPAGLRRDTTAAAKADRALSLFEEM REVPMNGVTYAIVICALLRAEREDEVLRLWTLAWSDPSTKKLR DMSNRVLGICKEQRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYWAAMEACEREGATAWRDALALVDKR+GSPLPPDDLF+EAGA LLQQAAALGISDAV+AASTRVWEK+E XXXXXXXXXXXXXXXXXXXXXXXXAVDQR TSAD
Sbjct: 1 MNKIIVACGRAGPDHYRQALDTFEDLDRTIGADGYTLTAVIDVLRRLGDWRRALALLDRLNELGVTANRGLRTSVNAVLSAMGPDNYHRARELVVKATVEWGVDGDVVTYGTLLLLASARLPPPAPLGSAGXXXXXXXXXXXXXXXXXXXVPRASAYPAGGPFGGEGGEEEESGQWETVDVLRWAVAAKEVPSEACLDMVVFGLARDGLWEEATAFVEAIGLAGLKVSRHQREALLSALSNGERWAGVVALAKSMLVDLNVVDNATAGLAMKAYAKLGLETHWRSALSVMKKAQRASRGGSRVVAADVLDGSAWRCLLAGLASEGLHEEAGAVMQAMPEAGVMVDKDSTAAVVLAAYKAGDHAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXILGMMLEGRLVPTASVYNAVLESICPASEGGYSARVRLRDSSPALSGGRLPEEADGSGGEGELNGLSHARGRGEDGGRDEPAGLRRDTTAAAKADRALSLFEEMWTREVPMNGVTYAIVICALLRAEREDEVLRLWTLAWSDPSTKKLRRDMSNRVLGICKEQRRGALAVRLLQLGARLSPKGLNDVAWPGPGPYWAAMEACEREGATAWRDALALVDKRNGSPLPPDDLFSEAGAGLLQQAAALGISDAVQAASTRVWEKQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVDQRGTSAD 705 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1504.2936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1504.2936.1 >prot_E-siliculosus-1a_F_contig1504.2936.1 ID=prot_E-siliculosus-1a_F_contig1504.2936.1|Name=mRNA_E-siliculosus-1a_F_contig1504.2936.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=1135bp MAVTSDRAAAPCRRRRESRRMQQSSMTLGLCALLRPRRGSAWGGGHVVVEback to top mRNA from alignment at E-siliculosus-1a_F_contig1504:11015..20389+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1504.2936.1 ID=mRNA_E-siliculosus-1a_F_contig1504.2936.1|Name=mRNA_E-siliculosus-1a_F_contig1504.2936.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=9375bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1504:11015..20389+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1504:11015..20389+ >mRNA_E-siliculosus-1a_F_contig1504.2936.1 ID=mRNA_E-siliculosus-1a_F_contig1504.2936.1|Name=mRNA_E-siliculosus-1a_F_contig1504.2936.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=6810bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1504:11015..20389+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |