mRNA_E-siliculosus-1a_F_contig1036.283.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: D7FLC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC2_ECTSI) HSP 1 Score: 506 bits (1303), Expect = 7.280e-178 Identity = 246/251 (98.01%), Postives = 249/251 (99.20%), Query Frame = 1 Query: 82 MRSRDATALTVLSVLGVCHSFQVSPISPCRPRHAPCPLLRPRRAQTVCKSAGKDEE-GDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYVVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 831
MRSRDATALTVLSVLGVCHSFQVSPISPCRPRHAPCPLLRPR AQTVCKSAGKDEE GDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGR+D+SLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPY+VTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS
Sbjct: 1 MRSRDATALTVLSVLGVCHSFQVSPISPCRPRHAPCPLLRPRCAQTVCKSAGKDEEEGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRIDSSLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 251
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A6H5JBW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW5_9PHAE) HSP 1 Score: 308 bits (788), Expect = 2.660e-101 Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 1 Query: 385 MAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYVVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 831
MAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPY+VTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS
Sbjct: 1 MAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 149
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A383W0Z3_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W0Z3_TETOB) HSP 1 Score: 176 bits (445), Expect = 1.650e-48 Identity = 96/214 (44.86%), Postives = 126/214 (58.88%), Query Frame = 1 Query: 187 CPLLRPRRAQTVCKSAGKDEEGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDA-KRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEV--DGEDIVVNWRLSGRINLPFNPPIKPYVVTTTFERDSD-GLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 816
C P++ T S+ E + +DP+ FLG+FLP AKD + + DA K G + +MA ++ L + WFVTG VD LFS+ F F D V+ TG+ YA GV KLF+Q S+ ++IS E D + +VV WRL GR+NLPF P IKPYVVTTT D D GL+ +Q DEFS+ GWD+LL ++ G FGA PAPPV
Sbjct: 14 CQASSPKQPPTGSNSSSDSNEAEPAYAYSDPVNQFLGQFLPSNRA-----AKDELAGIDFDAPKLSGRSIQQMAELVEAGLSRSQWFVTGEVDPRLFSDSFAFKDESVATTGIKAYATGVRKLFDQATSKVELISVEARPDTQALVVVWRLEGRVNLPFKPKIKPYVVTTTLGLDPDSGLICSQLDEFSVPGWDLLL-SILLGEGFGAKPAPPV 221
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A250WW06_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WW06_9CHLO) HSP 1 Score: 165 bits (417), Expect = 5.470e-45 Identity = 86/184 (46.74%), Postives = 112/184 (60.87%), Query Frame = 1 Query: 271 ADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGED--IVVNWRLSGRINLPFNPPIKPYVVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 816
+DP+ FLG FLP GE + + + K G+ ++A ++ L + WFVTG VD SLF++ F F D V+ G+ YAEGV K+F+QE SR +V+S + D IVV WRL G +NLPF P I PYVVTTTFE DSDGL+S+Q DEFS+ GW +L A+ G G PA PV
Sbjct: 15 SDPVNGFLGNFLPSGESVSASSLDQIDWTT---PKATGLEIRQLADRIEAKLSMSEWFVTGMVDPSLFAKEFSFKDDSVATKGIRSYAEGVRKIFDQETSRAEVVSVDTDAAKGIIVVTWRLEGCVNLPFKPRITPYVVTTTFEVDSDGLISSQLDEFSVPGWRLLAGALL-GSWAGPTPALPV 194
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A7J7PWC3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PWC3_9CHLO) HSP 1 Score: 165 bits (417), Expect = 3.310e-44 Identity = 92/214 (42.99%), Postives = 119/214 (55.61%), Query Frame = 1 Query: 187 CPLLRPRRAQTVCKSAGKDEEGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDA-KRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGED--IVVNWRLSGRINLPFNPPIKPYVVTTTFERD-SDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 816
C P++ E + +DP+ FLG+FLP AKD + V D K G + EMA ++ L + WFVTG VD LFS+ F F D V+ TG+ YA GV KLF+Q S+ ++++ E D IVV WRL GR+NLPF P IK YVVTTT D GL+++Q DEFS+ GWD+LL + G FGA PAPPV
Sbjct: 35 CGASSPKQPTPGSSRGSSTSESEPAYAYSDPVNQFLGQFLPSNRA-----AKDELVGVDFDQPKLSGRSIQEMAQLVEAGLSKSQWFVTGEVDPRLFSDSFAFKDESVATTGIKAYATGVRKLFDQATSKVELVTVEPQPADQAIVVTWRLEGRVNLPFKPKIKAYVVTTTLGVDPGTGLINSQVDEFSVPGWDLLLSTLL-GEGFGAKPAPPV 242
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A7S3ZJJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJJ4_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.200e-40 Identity = 90/196 (45.92%), Postives = 116/196 (59.18%), Query Frame = 1 Query: 193 LLRPRRAQTVCKSAGKDEEGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYVVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFP 780
L+ RR+ +AG +E DY +P+T FLG+F+PK QA + V D + + GE+ ALD LR WFVTG+V FS+ F F DP VSLTG+ YAEGVA+LF E++RC+VI+ GE+I V+WRLSG + + IKPYVV TTF R DGL+ Q D FSI GW ILL + P
Sbjct: 56 LVPTRRSVARVINAGGEE-----DY-VNPVTEFLGRFIPK-------QAP-IELGVDWDQPKTPLPLGELVGALDRGLREREWFVTGKVLPEYFSDDFKFEDPDVSLTGIQNYAEGVARLFG-EDARCEVIACAPRGEEIAVDWRLSGSVRVGPGATIKPYVVHTTF-RVRDGLVVFQEDAFSIPGWQILLGVLLP 235
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A0G4I8F7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I8F7_9ALVE) HSP 1 Score: 150 bits (380), Expect = 1.180e-38 Identity = 98/252 (38.89%), Postives = 133/252 (52.78%), Query Frame = 1 Query: 103 ALTVLSVLGVCHSFQVSPI-SPCRPRHAPCPL-LRPRRAQTV---------------CKSAGKDEEGDGV--DYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGED----AKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGED--IVVNWRLSGRINLPFNPPIKPYVVTTTFERD-SDGLLSTQRDEFSIAGWDILLHAVFP 780
+L LS + VC F +PC P PL LR R A+++ C A EG+G + +P+T FLG F+ K + + VGE +KR+ M +A L++AL+ + WFVTGRVD S FSE F F DP V + G++ YA+GV K+F+QE SR +VI T V + I V WRL G++N+ IKPY+V T F D GL+ +Q D FSI +DILL A FP
Sbjct: 2 SLHFLSCVLVCGLFSAQAFRTPCTSSRWPTPLRLRKRPAESLVEGLRAEGSNRTTRSCLRAASTSEGEGETSEEYVNPLTGFLGNFIQKKPVPESSERGNQNKPVGEIDFAVSKRKKMPLNRLAQELEKALQRSEWFVTGRVDPSFFSENFSFEDPDVKVKGIEDYAKGVNKIFDQETSRAEVIETTVKSANNTITVTWRLEGKVNVGPGLRIKPYLVYTDFGVDPKSGLIVSQLDRFSIPSYDILLSAFFP 253
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: K0RB30_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RB30_THAOC) HSP 1 Score: 146 bits (368), Expect = 6.500e-37 Identity = 85/193 (44.04%), Postives = 111/193 (57.51%), Query Frame = 1 Query: 259 VDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDG---EDIVVNWRLSGRINLPFNPPIKPYVVTTTFERDSD-GLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPV 825
VD + TAFL F+ K PP D V + DA + ++ ++A+ALD L + WFVTG ++ F++ F F DP V LTGV++YA GV KLF+Q+ SR ++IST V+ I V WRLSG +++ IKPY+ T F D D GL+ Q D FSI GWDILL AVFP G AP P V
Sbjct: 64 VDEYRNGATAFLSNFMQK----EPPTESDPVSEIDFDAPKVKLSIEDLAAALDFELYNREWFVTGLINPIYFADDFQFQDPDVKLTGVEEYARGVNKLFDQDTSRAEIISTVVNATVPNTITVTWRLSGGVSIGPGLEIKPYICYTDFTVDEDTGLIVFQEDRFSIPGWDILLSAVFP-FLIGTVTAPAAPAV 251
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A7S2KK02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KK02_9STRA) HSP 1 Score: 143 bits (360), Expect = 1.400e-35 Identity = 89/220 (40.45%), Postives = 119/220 (54.09%), Query Frame = 1 Query: 241 DEEG-DGVDYSADPITAFLGKFL----PKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTE----------------VDGEDIV----VNWRLSGRINL-PFNPP-IKPYVVTTTFE-RDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 816
DE+ D + A+P+T+FLG F+ K E + Q + + K + EM LD +R N WFVTG+V + LF++ FFF DP V L G++KYA+GV +LF+Q SR +VIS E +D + V V WRLSG +N+ PF IKPY+ + R+ DGL+ Q D F I GWDILL A+ P PF A PAPPV
Sbjct: 66 DEQNLDVGEIYANPLTSFLGNFIGSKDEKMEIGDKEQENIVQLDDFTKPKAFNLPIEEMVKRLDAGIRENEWFVTGKVMSELFADDFFFKDPDVQLRGIEKYADGVNRLFDQNTSRVEVISCELNPAITDTVNKEVGVSIDDDKFVQVVTVEWRLSGNVNIGPFGGLFIKPYICYSDLHVRNVDGLIVYQEDRFDIPGWDILLSAIAPWLPFLAPPAPPV 285
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A6T8H729_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8H729_HEMAN) HSP 1 Score: 139 bits (350), Expect = 9.480e-35 Identity = 75/193 (38.86%), Postives = 101/193 (52.33%), Query Frame = 1 Query: 247 EGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVG-EDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIV-VNWRLSGRINLPFNPPIKPYVVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPG-HPFGADPAPPV 816
+GD ++Y DP+T L FLP G+ + + K G++ +MA+ +D+ LR WFVTG LF F F DP V G+++YA GV +LFNQE S V+ V E I+ V WRL G +N+ IKPYVV T E DGL+ Q D FSI W++L+ A P P P PP+
Sbjct: 52 KGDKLEYR-DPLTKVLANFLPGGKPGKSRDKSSAMDAIDWNKPKSSGLSVDQMAARVDQGLRERAWFVTGEALPELFHPDFEFKDPNVKTKGIEEYARGVHRLFNQEASSMQVVECAVSSEKIIGVKWRLEGAVNVGPGLEIKPYVVYTDLEVGQDGLIIAQEDRFSIPAWELLIWAFLPFLRPMLPPPCPPI 243 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1036.283.1 >prot_E-siliculosus-1a_F_contig1036.283.1 ID=prot_E-siliculosus-1a_F_contig1036.283.1|Name=mRNA_E-siliculosus-1a_F_contig1036.283.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=251bp MRSRDATALTVLSVLGVCHSFQVSPISPCRPRHAPCPLLRPRRAQTVCKSback to top mRNA from alignment at E-siliculosus-1a_F_contig1036:11453..15995+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1036.283.1 ID=mRNA_E-siliculosus-1a_F_contig1036.283.1|Name=mRNA_E-siliculosus-1a_F_contig1036.283.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4543bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1036:11453..15995+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1036:11453..15995+ >mRNA_E-siliculosus-1a_F_contig1036.283.1 ID=mRNA_E-siliculosus-1a_F_contig1036.283.1|Name=mRNA_E-siliculosus-1a_F_contig1036.283.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1036:11453..15995+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |