mRNA_E-siliculosus-1a_F_contig1036.283.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1036.283.1
Unique NamemRNA_E-siliculosus-1a_F_contig1036.283.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: D7FLC2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLC2_ECTSI)

HSP 1 Score: 506 bits (1303), Expect = 7.280e-178
Identity = 246/251 (98.01%), Postives = 249/251 (99.20%), Query Frame = 1 
Query:   82 MRSRDATALTVLSVLGVCHSFQVSPISPCRPRHAPCPLLRPRRAQTVCKSAGKDEE-GDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYVVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 831
            MRSRDATALTVLSVLGVCHSFQVSPISPCRPRHAPCPLLRPR AQTVCKSAGKDEE GDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGR+D+SLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPY+VTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS
Sbjct:    1 MRSRDATALTVLSVLGVCHSFQVSPISPCRPRHAPCPLLRPRCAQTVCKSAGKDEEEGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRIDSSLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 251
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BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A6H5JBW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBW5_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 2.660e-101
Identity = 148/149 (99.33%), Postives = 149/149 (100.00%), Query Frame = 1 
Query:  385 MAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYVVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 831
            MAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPY+VTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS
Sbjct:    1 MAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYIVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS 149
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BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A383W0Z3_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W0Z3_TETOB)

HSP 1 Score: 176 bits (445), Expect = 1.650e-48
Identity = 96/214 (44.86%), Postives = 126/214 (58.88%), Query Frame = 1 
Query:  187 CPLLRPRRAQTVCKSAGKDEEGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDA-KRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEV--DGEDIVVNWRLSGRINLPFNPPIKPYVVTTTFERDSD-GLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 816
            C    P++  T   S+    E +     +DP+  FLG+FLP         AKD +  +  DA K  G +  +MA  ++  L  + WFVTG VD  LFS+ F F D  V+ TG+  YA GV KLF+Q  S+ ++IS E   D + +VV WRL GR+NLPF P IKPYVVTTT   D D GL+ +Q DEFS+ GWD+LL ++  G  FGA PAPPV
Sbjct:   14 CQASSPKQPPTGSNSSSDSNEAEPAYAYSDPVNQFLGQFLPSNRA-----AKDELAGIDFDAPKLSGRSIQQMAELVEAGLSRSQWFVTGEVDPRLFSDSFAFKDESVATTGIKAYATGVRKLFDQATSKVELISVEARPDTQALVVVWRLEGRVNLPFKPKIKPYVVTTTLGLDPDSGLICSQLDEFSVPGWDLLL-SILLGEGFGAKPAPPV 221
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BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A250WW06_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250WW06_9CHLO)

HSP 1 Score: 165 bits (417), Expect = 5.470e-45
Identity = 86/184 (46.74%), Postives = 112/184 (60.87%), Query Frame = 1 
Query:  271 ADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGED--IVVNWRLSGRINLPFNPPIKPYVVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 816
            +DP+  FLG FLP GE  +      + +      K  G+   ++A  ++  L  + WFVTG VD SLF++ F F D  V+  G+  YAEGV K+F+QE SR +V+S + D     IVV WRL G +NLPF P I PYVVTTTFE DSDGL+S+Q DEFS+ GW +L  A+  G   G  PA PV
Sbjct:   15 SDPVNGFLGNFLPSGESVSASSLDQIDWTT---PKATGLEIRQLADRIEAKLSMSEWFVTGMVDPSLFAKEFSFKDDSVATKGIRSYAEGVRKIFDQETSRAEVVSVDTDAAKGIIVVTWRLEGCVNLPFKPRITPYVVTTTFEVDSDGLISSQLDEFSVPGWRLLAGALL-GSWAGPTPALPV 194
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BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A7J7PWC3_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PWC3_9CHLO)

HSP 1 Score: 165 bits (417), Expect = 3.310e-44
Identity = 92/214 (42.99%), Postives = 119/214 (55.61%), Query Frame = 1 
Query:  187 CPLLRPRRAQTVCKSAGKDEEGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDA-KRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGED--IVVNWRLSGRINLPFNPPIKPYVVTTTFERD-SDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 816
            C    P++            E +     +DP+  FLG+FLP         AKD +  V  D  K  G +  EMA  ++  L  + WFVTG VD  LFS+ F F D  V+ TG+  YA GV KLF+Q  S+ ++++ E    D  IVV WRL GR+NLPF P IK YVVTTT   D   GL+++Q DEFS+ GWD+LL  +  G  FGA PAPPV
Sbjct:   35 CGASSPKQPTPGSSRGSSTSESEPAYAYSDPVNQFLGQFLPSNRA-----AKDELVGVDFDQPKLSGRSIQEMAQLVEAGLSKSQWFVTGEVDPRLFSDSFAFKDESVATTGIKAYATGVRKLFDQATSKVELVTVEPQPADQAIVVTWRLEGRVNLPFKPKIKAYVVTTTLGVDPGTGLINSQVDEFSVPGWDLLLSTLL-GEGFGAKPAPPV 242
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BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A7S3ZJJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZJJ4_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.200e-40
Identity = 90/196 (45.92%), Postives = 116/196 (59.18%), Query Frame = 1 
Query:  193 LLRPRRAQTVCKSAGKDEEGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYVVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFP 780
            L+  RR+     +AG +E     DY  +P+T FLG+F+PK       QA  +   V  D  +  +  GE+  ALD  LR   WFVTG+V    FS+ F F DP VSLTG+  YAEGVA+LF  E++RC+VI+    GE+I V+WRLSG + +     IKPYVV TTF R  DGL+  Q D FSI GW ILL  + P
Sbjct:   56 LVPTRRSVARVINAGGEE-----DY-VNPVTEFLGRFIPK-------QAP-IELGVDWDQPKTPLPLGELVGALDRGLREREWFVTGKVLPEYFSDDFKFEDPDVSLTGIQNYAEGVARLFG-EDARCEVIACAPRGEEIAVDWRLSGSVRVGPGATIKPYVVHTTF-RVRDGLVVFQEDAFSIPGWQILLGVLLP 235
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BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A0G4I8F7_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I8F7_9ALVE)

HSP 1 Score: 150 bits (380), Expect = 1.180e-38
Identity = 98/252 (38.89%), Postives = 133/252 (52.78%), Query Frame = 1 
Query:  103 ALTVLSVLGVCHSFQVSPI-SPCRPRHAPCPL-LRPRRAQTV---------------CKSAGKDEEGDGV--DYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGED----AKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGED--IVVNWRLSGRINLPFNPPIKPYVVTTTFERD-SDGLLSTQRDEFSIAGWDILLHAVFP 780
            +L  LS + VC  F      +PC     P PL LR R A+++               C  A    EG+G   +   +P+T FLG F+ K       +  +    VGE     +KR+ M    +A  L++AL+ + WFVTGRVD S FSE F F DP V + G++ YA+GV K+F+QE SR +VI T V   +  I V WRL G++N+     IKPY+V T F  D   GL+ +Q D FSI  +DILL A FP
Sbjct:    2 SLHFLSCVLVCGLFSAQAFRTPCTSSRWPTPLRLRKRPAESLVEGLRAEGSNRTTRSCLRAASTSEGEGETSEEYVNPLTGFLGNFIQKKPVPESSERGNQNKPVGEIDFAVSKRKKMPLNRLAQELEKALQRSEWFVTGRVDPSFFSENFSFEDPDVKVKGIEDYAKGVNKIFDQETSRAEVIETTVKSANNTITVTWRLEGKVNVGPGLRIKPYLVYTDFGVDPKSGLIVSQLDRFSIPSYDILLSAFFP 253
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BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: K0RB30_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RB30_THAOC)

HSP 1 Score: 146 bits (368), Expect = 6.500e-37
Identity = 85/193 (44.04%), Postives = 111/193 (57.51%), Query Frame = 1 
Query:  259 VDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDG---EDIVVNWRLSGRINLPFNPPIKPYVVTTTFERDSD-GLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPV 825
            VD   +  TAFL  F+ K     PP   D V  +  DA +  ++  ++A+ALD  L +  WFVTG ++   F++ F F DP V LTGV++YA GV KLF+Q+ SR ++IST V+      I V WRLSG +++     IKPY+  T F  D D GL+  Q D FSI GWDILL AVFP    G   AP  P V
Sbjct:   64 VDEYRNGATAFLSNFMQK----EPPTESDPVSEIDFDAPKVKLSIEDLAAALDFELYNREWFVTGLINPIYFADDFQFQDPDVKLTGVEEYARGVNKLFDQDTSRAEIISTVVNATVPNTITVTWRLSGGVSIGPGLEIKPYICYTDFTVDEDTGLIVFQEDRFSIPGWDILLSAVFP-FLIGTVTAPAAPAV 251
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BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A7S2KK02_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KK02_9STRA)

HSP 1 Score: 143 bits (360), Expect = 1.400e-35
Identity = 89/220 (40.45%), Postives = 119/220 (54.09%), Query Frame = 1 
Query:  241 DEEG-DGVDYSADPITAFLGKFL----PKGEKSNPPQAKDLVFNVGEDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTE----------------VDGEDIV----VNWRLSGRINL-PFNPP-IKPYVVTTTFE-RDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPV 816
            DE+  D  +  A+P+T+FLG F+     K E  +  Q   +  +     K   +   EM   LD  +R N WFVTG+V + LF++ FFF DP V L G++KYA+GV +LF+Q  SR +VIS E                +D +  V    V WRLSG +N+ PF    IKPY+  +    R+ DGL+  Q D F I GWDILL A+ P  PF A PAPPV
Sbjct:   66 DEQNLDVGEIYANPLTSFLGNFIGSKDEKMEIGDKEQENIVQLDDFTKPKAFNLPIEEMVKRLDAGIRENEWFVTGKVMSELFADDFFFKDPDVQLRGIEKYADGVNRLFDQNTSRVEVISCELNPAITDTVNKEVGVSIDDDKFVQVVTVEWRLSGNVNIGPFGGLFIKPYICYSDLHVRNVDGLIVYQEDRFDIPGWDILLSAIAPWLPFLAPPAPPV 285
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BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Match: A0A6T8H729_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6T8H729_HEMAN)

HSP 1 Score: 139 bits (350), Expect = 9.480e-35
Identity = 75/193 (38.86%), Postives = 101/193 (52.33%), Query Frame = 1 
Query:  247 EGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVG-EDAKRRGMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKYAEGVAKLFNQEESRCDVISTEVDGEDIV-VNWRLSGRINLPFNPPIKPYVVTTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPG-HPFGADPAPPV 816
            +GD ++Y  DP+T  L  FLP G+          +  +     K  G++  +MA+ +D+ LR   WFVTG     LF   F F DP V   G+++YA GV +LFNQE S   V+   V  E I+ V WRL G +N+     IKPYVV T  E   DGL+  Q D FSI  W++L+ A  P   P    P PP+
Sbjct:   52 KGDKLEYR-DPLTKVLANFLPGGKPGKSRDKSSAMDAIDWNKPKSSGLSVDQMAARVDQGLRERAWFVTGEALPELFHPDFEFKDPNVKTKGIEEYARGVHRLFNQEASSMQVVECAVSSEKIIGVKWRLEGAVNVGPGLEIKPYVVYTDLEVGQDGLIIAQEDRFSIPAWELLIWAFLPFLRPMLPPPCPPI 243
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1036.283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLC2_ECTSI7.280e-17898.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBW5_9PHAE2.660e-10199.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A383W0Z3_TETOB1.650e-4844.86Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A250WW06_9CHLO5.470e-4546.74Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A7J7PWC3_9CHLO3.310e-4442.99Uncharacterized protein n=1 Tax=Scenedesmus sp. NR... [more]
A0A7S3ZJJ4_9STRA1.200e-4045.92Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A0G4I8F7_9ALVE1.180e-3838.89Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
K0RB30_THAOC6.500e-3744.04Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S2KK02_9STRA1.400e-3540.45Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A6T8H729_HEMAN9.480e-3538.86Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1036contigE-siliculosus-1a_F_contig1036:11453..15995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size753
Model size1368
Exons5
Ec32 orthologEc-12_007600.1
Ec32 ortholog descriptionProtein of unknown function DUF2358
Hectar predicted targeting categorysignal peptide
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs2D8NW@1,2S4PV@2759
Seed eggNOG ortholog2880.D7FLC2
Seed ortholog evalue2.7e-140
Seed ortholog score504.6
Taxonomic scopeEukaryota
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927538.9599895-UTR-E-siliculosus-1a_F_contig1036:11452..115331622927538.9599895-UTR-E-siliculosus-1a_F_contig1036:11452..11533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1036 11453..11533 +
1696318574.9381118-UTR-E-siliculosus-1a_F_contig1036:11452..115331696318574.9381118-UTR-E-siliculosus-1a_F_contig1036:11452..11533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1036 11453..11533 +
1622927539.031028-UTR-E-siliculosus-1a_F_contig1036:15461..159951622927539.031028-UTR-E-siliculosus-1a_F_contig1036:15461..15995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1036 15462..15995 +
1696318575.0027683-UTR-E-siliculosus-1a_F_contig1036:15461..159951696318575.0027683-UTR-E-siliculosus-1a_F_contig1036:15461..15995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1036 15462..15995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927538.9710357-CDS-E-siliculosus-1a_F_contig1036:11533..118001622927538.9710357-CDS-E-siliculosus-1a_F_contig1036:11533..11800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1036 11534..11800 +
1696318574.9478824-CDS-E-siliculosus-1a_F_contig1036:11533..118001696318574.9478824-CDS-E-siliculosus-1a_F_contig1036:11533..11800Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1036 11534..11800 +
1622927538.982604-CDS-E-siliculosus-1a_F_contig1036:13979..141351622927538.982604-CDS-E-siliculosus-1a_F_contig1036:13979..14135Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1036 13980..14135 +
1696318574.958606-CDS-E-siliculosus-1a_F_contig1036:13979..141351696318574.958606-CDS-E-siliculosus-1a_F_contig1036:13979..14135Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1036 13980..14135 +
1622927538.995201-CDS-E-siliculosus-1a_F_contig1036:14542..146101622927538.995201-CDS-E-siliculosus-1a_F_contig1036:14542..14610Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1036 14543..14610 +
1696318574.971834-CDS-E-siliculosus-1a_F_contig1036:14542..146101696318574.971834-CDS-E-siliculosus-1a_F_contig1036:14542..14610Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1036 14543..14610 +
1622927539.0066001-CDS-E-siliculosus-1a_F_contig1036:14972..151061622927539.0066001-CDS-E-siliculosus-1a_F_contig1036:14972..15106Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1036 14973..15106 +
1696318574.984404-CDS-E-siliculosus-1a_F_contig1036:14972..151061696318574.984404-CDS-E-siliculosus-1a_F_contig1036:14972..15106Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1036 14973..15106 +
1622927539.0195475-CDS-E-siliculosus-1a_F_contig1036:15333..154611622927539.0195475-CDS-E-siliculosus-1a_F_contig1036:15333..15461Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1036 15334..15461 +
1696318574.994492-CDS-E-siliculosus-1a_F_contig1036:15333..154611696318574.994492-CDS-E-siliculosus-1a_F_contig1036:15333..15461Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1036 15334..15461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1036.283.1prot_E-siliculosus-1a_F_contig1036.283.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1036 11534..15461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1036.283.1

>prot_E-siliculosus-1a_F_contig1036.283.1 ID=prot_E-siliculosus-1a_F_contig1036.283.1|Name=mRNA_E-siliculosus-1a_F_contig1036.283.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=251bp
MRSRDATALTVLSVLGVCHSFQVSPISPCRPRHAPCPLLRPRRAQTVCKS
AGKDEEGDGVDYSADPITAFLGKFLPKGEKSNPPQAKDLVFNVGEDAKRR
GMAAGEMASALDEALRSNGWFVTGRVDASLFSEGFFFSDPQVSLTGVDKY
AEGVAKLFNQEESRCDVISTEVDGEDIVVNWRLSGRINLPFNPPIKPYVV
TTTFERDSDGLLSTQRDEFSIAGWDILLHAVFPGHPFGADPAPPVPPVAS
*
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mRNA from alignment at E-siliculosus-1a_F_contig1036:11453..15995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1036.283.1 ID=mRNA_E-siliculosus-1a_F_contig1036.283.1|Name=mRNA_E-siliculosus-1a_F_contig1036.283.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=4543bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1036:11453..15995+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CCGCACTGCTCCGCTCGGGTGTGCAAGGTGCAAGGTGTCATCCTCTGTGC
AGCCTGTGGCTGCCCTACCCACCCAGTCACCATGCGCAGCCGGGACGCTA
CCGCCTTGACGGTCCTTTCGGTGCTTGGGGTGTGCCACTCTTTCCAAGTC
TCGCCGATTTCGCCGTGCCGACCGCGACACGCACCCTGCCCGCTGCTGAG
GCCTCGTCGTGCCCAAACGGTGTGCAAGAGTGCAGGCAAGGATGAAGAAG
GGGACGGTGTGGATTACTCGGCGGATCCTATAACTGCGTTCCTCGGGAAG
TTTCTGCCTAAGGGCGAGAAGAGCAATCCGCCACAAGCGAAAGATCTGGT
GAGTGTTAGTGGCTATATGCTGTATACTAGACGAACAGCAGACTACAATA
TCGTGTGCCTCTTCCGATTTCGTCATGTATGTACACGTAACGTCAAACGA
GGTGAAGCTACATAGCGGCAGGTATTTACATGAAGCCCATGCGTCAAAAC
CAGTAGACTAGACGTGCCGAGAGACATGCTACAGGTTTCAGTTTACAGCC
CCTCCCCTCAACCGCAAACCGTAACCCCTCCCAAACTATGCATATGTAGA
GGTGGGAGCTTGGCAAGTTATGTCGTTGTTGGCGTCCATTCGGAAGGTCT
ACAAAAATGTAGTCTATGTTGGTGTTGTAGTCTCTCTGTGTGTACTTTCC
TTATATGCACCCCGGACCCATTTTGAAAGCTCGATTACGCCACGACGAAG
AAGGCACATAAACTAAACGATACGTTTTCGGAGAGCTCTCGAGGAGTCGG
CTTCAACGCCGCCCTTTTCGGCGCTGTGACTCGTTCTGCTCTTGAGAAAT
CGAGCTTGTGAAAATCGGTGCAGGGGGTGTGTTATCTTGTGTCGGTACGG
TAGTCTGGTCTTGCACCAGTGAGAGCCATTTGACTACAGACGGTGCCGGC
CCGCGGGTGAGGAACACCCATGTTTAGGTGAGGCGCAACACATCATTCAC
ACCCTATCGCTGCAGCGAAATGTGAGCTGTAGTTAGTTCTTGTGTCACCA
CCATTGCGTGTGTTTGACAAGTTACTGGTAGTTGTCCTCCTCGATTACTT
CTTTTTGGGAGTATACCAGCCAGTATTCGGCCGTCTCCATTGAACACGAG
CCTTCCATTTACCCTCTGGATGCTAGCATGTCTGCCGGTTCTACTGGACA
ACTATACATACAACTCGCAAGCACTAAGCTATCGCTGGGAGGGCGAACGA
AACGTTCAATCCATCCCCAGACGCACAAGGTGTCACCACGGGCGCTCATG
GCAGCGAAAGATGAGTCAGGAGCTCATCAAACAAACATGCTTCCGTCATA
GTTTGTCCCCAGACGTGCGCAATACTAGAGTGTAAACATCAATGAAAGAG
ACGTTTGACCGAATCGCGCACGACACCCATGCCGATCCCACACTCGAAGA
GAAAGGTCTGGTGGTAAAACCTTCTGAGATGTGCTAAAAAGCCACTGCTT
TCATCAATAGTTAGGAGTGTCGCTCTCGACATACAAATCACATGCGGACA
AGGGCACTTTTCGCGATGACCTTTGCGGGGGAAAATGGCAGCTGTGTGTT
GCAAGGAACAGCACATGATGTGGCGAGAGAGTCTCAAGCCTGTTGTACAG
CAGTAATGCTGTTTTGAAACATGTCACAGCGGAAGAGGCTTGCCACGTGA
CGAAAGGAATGACTGTAGAGGTCATCCCAGAAGGTTTCAACGTCAGACAT
TCCTTGATCGAGTGTGGGATCGATATGGGTGCCGTGTGCTGTTGATCAAG
CGTCTCTTTCATTTACGAGGATTCTTGTGCACGTCTGGGGACAAACCATG
ACAGAAGCATGTTTGTTTGGTAAGCGCCTGACTCGTCTTTCGCTGCCATG
AGCGCCCGTGGTGACACCTTGTGGATCTGGGGTGCTTAAGATCCTTTGCG
AGTGTGCGATTGTACGTTCATTTTCATGGCGCAGTCGGCGATGGCGATGC
AGCAGAGGGGTCACCCACCCGGAGGGCTCCGGGCGTGTCGAAAAAATGGC
AACTTGTTGCTTTCACAGTGACATCGCCTGCGACTGGGCCGTTCTTGGAT
CTGTTCTGGCTGAAACATTCGCAGTCTACAAAGCAGAGAAAAAGGCCATA
TGGTTGGTTTGGGGCAGCTTGCTCTTTTCGAGGAGCTTACGCGTTTAGGC
TGGACACCTCTAGATACGCAACGCTGTCCGCGGGCCGGGGTGCGGCGCTC
AATTATTTGCAAGGGACGACACGACCGCGTTATCCTGTGGGCTAAGGTTC
TCGTTTGTGCTGTTTTTGGTGCATGAGTGGGCTCACACCTAACCCGTTCT
CCTCTCTGTGGCGTCTGCGTAGGGCGGCCTGTGCTGGGGGGATACAGGGA
GGTTCTCAAAAGAGCGTCCGTTGAAGCGGCGTTTGTATTCCACCCAGATG
TACCCTAATTCGCCCACCTTTAGTACTGCTGTACCGCAAATATATCTTGT
TGCTCGATTTACGGCCAAACGCGGCAGGTGTTCAACGTCGGCGAGGACGC
AAAACGAAGAGGCATGGCCGCGGGGGAGATGGCGTCTGCCCTCGACGAGG
CCCTGAGAAGCAACGGCTGGTTCGTTACCGGGCGAGTAGACGCCTCTCTT
TTCAGCGAAGGCTTCTTCTTCTCGGACCCGCAGGTGACAAGAGTGACGAA
CGACGCGCTTATTTTTTGCTAAGGTATAGATCGGGCCCGCAATCAAGAGA
AATTCTGCTAAGACAAGTGGCGCTTGAATTTCAACCCAAGAATTCGACAA
TCGGGGTGAAAACACACAGCTGGCTCAGCGGCAAATCCTTTACTAAACTC
TATAGAGATTGATGAACCCTCTGCTCCACGGTGGAGACGAAATGAAAAAG
AGAATCTCGTCCCGAAATCGATGGTTGCGGACCCGTTCTGTACAGCCATC
CTGTAGAATTCGATTTGGAATGAATGGACGCCCACGCTTTCTGGGGACAA
ACTCTTATCATGCGTGCCATCACCGGAGCAGTAACGTGGAGGCTGACTAC
TGTAGAACCAAACTGCTTGCTCGGCGTGCCCGTGTATCAGGTGTCCCTCA
CCGGGGTCGACAAGTACGCCGAAGGCGTGGCGAAGCTGTTCAACCAGGAA
GAGTCCAGGTGCGGCGCAATTACTCCGGGTTTTGTCCCGGTGGTGACGAG
CGTTCGCGTCGTTGCGAACACCTCCGTGTGTTGACCGCTGGAAGAAGGGA
TTCAGTGTGCCTTGGGGTATTCTTAGTCGGTGCGAGAACCACACTCATTC
TTGTCCGCTCGTGCAGCCGTTTATTTTTGTATAGCAAAATCGTATCCAGT
TCTGCCCTAGGGGGAGGTCCATGGGCGGTGAGTTGATATGGAGTGTGATC
GCACCCGCCAGTATGACCGAGTCCTCGTGGAATACGCAGCGGGAGCTAAC
TCTCAAGGGGAAAAAAAGCAGGCATTCCGCAGCAATCGTCTTGTTGATAT
CGCGAGCCGTACGTACGCAGGTGTGACGTCATTTCCACCGAAGTGGACGG
GGAGGACATTGTGGTGAACTGGCGTCTCTCCGGGCGGATAAACCTGCCGT
TCAACCCTCCCATCAAGCCTTACGTTGTGACCACTACCTTCGAGAGAGAC
TCAGGTCAGTGCCCTTGCCTGTCGTAGAGGTGGTGGGGCTCCCGAACGTT
TTGGTCAGTAGCACCAGAGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGA
GAGAGAGAGAGAGAGACGGAGGAAAGCGTGCCTCGGCTCCATTGCTCATC
TTCCCATCATGAGTGTTTTGGTTGCAGGGTGTTTACCCCCCTTCGTCCCG
CCGCTCCGCCCGCCGCCGCGTCCTCCTTCAGACGGGCTGCTGAGCACGCA
ACGGGACGAGTTTTCCATCGCCGGCTGGGACATCTTGCTGCATGCCGTGT
TTCCCGGTCACCCTTTCGGGGCGGACCCTGCCCCTCCCGTGCCCCCGGTC
GCCTCGTGACGATATAGATGCTGATTTTACCGCAGTGGAACATATGGGTT
TCTATTCGGCACCTGTTGGCACGACAGAGGCGTGGGCGCCAATAGATGAT
GCGGAGCTCTGCTCTGACATTGCAGCAGTTTTGATGTTTGGTTGGTTGGG
GAATGCCAGGTGCTGTCGTTGGGCAGATTTTCACTGCGTTGAGCAGCATG
GGCATCAGTTCTTGAAGGCCAACGGCGACCACAAACAAGTATGCACAAAG
AAAGAGACGCAATCATGCGCGCTCAAGCTTCCTATCGAGTTAAATCGACG
CAACAGGTGTTCTTGCTTGGGTTCATACAGTAGAACATCGAAACGCCACA
CAGCACATCAGTGTTGGTAATTTCGTGGTGATCCTGCGTTACATCGCTGC
TGCGTCAACTGTGCTGGCAAAACGATAGGTCCAGCGAACTGGTTTGTGTT
GCACGCGCACAATGATGGCCGTTGTGTTTCTTTAATCAGCATCGACCGCG
CTGTCCGAGTGGCAATTGATGAAGACTTCAATCGAAATTCGTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1036:11453..15995+

>mRNA_E-siliculosus-1a_F_contig1036.283.1 ID=mRNA_E-siliculosus-1a_F_contig1036.283.1|Name=mRNA_E-siliculosus-1a_F_contig1036.283.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1506bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1036:11453..15995+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCGCAGCCGGGACGCTACCGCCTTGACGGTCCTTTCGGTGCTTGGGGT
GTGCCACTCTTTCCAAGTCTCGCCGATTTCGCCGTGCCGACCGCGACACG
CACCCTGCCCGCTGCTGAGGCCTCGTCGTGCCCAAACGGTGTGCAAGAGT
GCAGGCAAGGATGAAGAAGGGGACGGTGTGGATTACTCGGCGGATCCTAT
AACTGCGTTCCTCGGGAAGTTTCTGCCTAAGGGCGAGAAGAGCAATCCGC
CACAAGCGAAAGATCTGATGCGCAGCCGGGACGCTACCGCCTTGACGGTC
CTTTCGGTGCTTGGGGTGTGCCACTCTTTCCAAGTCTCGCCGATTTCGCC
GTGCCGACCGCGACACGCACCCTGCCCGCTGCTGAGGCCTCGTCGTGCCC
AAACGGTGTGCAAGAGTGCAGGCAAGGATGAAGAAGGGGACGGTGTGGAT
TACTCGGCGGATCCTATAACTGCGTTCCTCGGGAAGTTTCTGCCTAAGGG
CGAGAAGAGCAATCCGCCACAAGCGAAAGATCTGGTGTTCAACGTCGGCG
AGGACGCAAAACGAAGAGGCATGGCCGCGGGGGAGATGGCGTCTGCCCTC
GACGAGGCCCTGAGAAGCAACGGCTGGTTCGTTACCGGGCGAGTAGACGC
CTCTCTTTTCAGCGAAGGCTTCTTCTTCTCGGACCCGCAGGTGTTCAACG
TCGGCGAGGACGCAAAACGAAGAGGCATGGCCGCGGGGGAGATGGCGTCT
GCCCTCGACGAGGCCCTGAGAAGCAACGGCTGGTTCGTTACCGGGCGAGT
AGACGCCTCTCTTTTCAGCGAAGGCTTCTTCTTCTCGGACCCGCAGGTGT
CCCTCACCGGGGTCGACAAGTACGCCGAAGGCGTGGCGAAGCTGTTCAAC
CAGGAAGAGTCCAGGTGTCCCTCACCGGGGTCGACAAGTACGCCGAAGGC
GTGGCGAAGCTGTTCAACCAGGAAGAGTCCAGGTGTGACGTCATTTCCAC
CGAAGTGGACGGGGAGGACATTGTGGTGAACTGGCGTCTCTCCGGGCGGA
TAAACCTGCCGTTCAACCCTCCCATCAAGCCTTACGTTGTGACCACTACC
TTCGAGAGAGACTCAGGTGTGACGTCATTTCCACCGAAGTGGACGGGGAG
GACATTGTGGTGAACTGGCGTCTCTCCGGGCGGATAAACCTGCCGTTCAA
CCCTCCCATCAAGCCTTACGTTGTGACCACTACCTTCGAGAGAGACTCAG
ACGGGCTGCTGAGCACGCAACGGGACGAGTTTTCCATCGCCGGCTGGGAC
ATCTTGCTGCATGCCGTGTTTCCCGGTCACCCTTTCGGGGCGGACCCTGC
CCCTCCCGTGCCCCCGGTCGCCTCGTGAACGGGCTGCTGAGCACGCAACG
GGACGAGTTTTCCATCGCCGGCTGGGACATCTTGCTGCATGCCGTGTTTC
CCGGTCACCCTTTCGGGGCGGACCCTGCCCCTCCCGTGCCCCCGGTCGCC
TCGTGA
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