Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10358.281.1 vs. uniprot
Match: D8LMX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX9_ECTSI) HSP 1 Score: 142 bits (357), Expect = 1.970e-42 Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 1 Query: 1 MESRATIINVLNATGIVTIERGYDILADIKKVGGFFRPQPVGGIVEPKSWFVKAGTDERARTIAKQLKNSARRSGLHAQVCR 246
MESRATIINVLN TGIVTIERGY+ILADIKKVGGFFRPQPVG +VEPKSW VKA TDERARTIAKQLK SAR SGLHAQ R
Sbjct: 1 MESRATIINVLNTTGIVTIERGYEILADIKKVGGFFRPQPVGDVVEPKSWIVKARTDERARTIAKQLKKSARSSGLHAQDTR 82
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 0 |
| Cds size | 246 |
| Model size | 246 |
| Exons | 2 |
| Ec32 ortholog | Ec-02_004070.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10358.281.1 >prot_E-siliculosus-1a_F_contig10358.281.1 ID=prot_E-siliculosus-1a_F_contig10358.281.1|Name=mRNA_E-siliculosus-1a_F_contig10358.281.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=82bp
MESRATIINVLNATGIVTIERGYDILADIKKVGGFFRPQPVGGIVEPKSW
FVKAGTDERARTIAKQLKNSARRSGLHAQVCR back to topmRNA from alignment at E-siliculosus-1a_F_contig10358:1668..2100- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10358.281.1 ID=mRNA_E-siliculosus-1a_F_contig10358.281.1|Name=mRNA_E-siliculosus-1a_F_contig10358.281.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=433bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10358:1668..2100- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAATCAAGAGCGACGATCATCAACGTCTTGAACGCTACTGGTATGAT
GAGTTTCAGTTATCTCGTATCGAAGAGGTTCGTTTTTATGTGGACGGAGG
CCCTTCTGGCGCAGAACGAATATCTTGTGTCTGTTGCGAATCGTTTGTGG
AATCCGTTCTCTGTCTGACATGGTCTCTAACTTCCTGTCGCGTTATCCTC
CTTGCCGGCCCCATGCCCCATCTTTCACAGGTATTGTGACGATCGAGCGC
GGATACGACATACTCGCGGACATCAAGAAGGTCGGCGGGTTCTTCCGGCC
TCAGCCGGTGGGCGGCATCGTTGAGCCCAAGTCCTGGTTCGTCAAGGCCG
GAACCGACGAGCGTGCGCGCACCATCGCCAAACAGCTCAAGAACAGCGCC
CGTCGCTCTGGGCTACACGCGCAGGTATGTCGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10358:1668..2100- >mRNA_E-siliculosus-1a_F_contig10358.281.1 ID=mRNA_E-siliculosus-1a_F_contig10358.281.1|Name=mRNA_E-siliculosus-1a_F_contig10358.281.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10358:1668..2100- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAATCAAGAGCGACGATCATCAACGTCTTGAACGCTACTGATGGAAT
CAAGAGCGACGATCATCAACGTCTTGAACGCTACTGGTATTGTGACGATC
GAGCGCGGATACGACATACTCGCGGACATCAAGAAGGTCGGCGGGTTCTT
CCGGCCTCAGCCGGTGGGCGGCATCGTTGAGCCCAAGTCCTGGTTCGTCA
AGGCCGGAACCGACGAGCGTGCGCGCACCATCGCCAAACAGCTCAAGAAC
AGCGCCCGTCGCTCTGGGCTACACGCGCAGGTATGTCGAGTATTGTGACG
ATCGAGCGCGGATACGACATACTCGCGGACATCAAGAAGGTCGGCGGGTT
CTTCCGGCCTCAGCCGGTGGGCGGCATCGTTGAGCCCAAGTCCTGGTTCG
TCAAGGCCGGAACCGACGAGCGTGCGCGCACCATCGCCAAACAGCTCAAG
AACAGCGCCCGTCGCTCTGGGCTACACGCGCAGGTATGTCGA back to top
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