mRNA_E-siliculosus-1a_F_contig10358.281.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10358.281.1
Unique NamemRNA_E-siliculosus-1a_F_contig10358.281.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10358.281.1 vs. uniprot
Match: D8LMX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX9_ECTSI)

HSP 1 Score: 142 bits (357), Expect = 1.970e-42
Identity = 72/82 (87.80%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:    1 MESRATIINVLNATGIVTIERGYDILADIKKVGGFFRPQPVGGIVEPKSWFVKAGTDERARTIAKQLKNSARRSGLHAQVCR 246
            MESRATIINVLN TGIVTIERGY+ILADIKKVGGFFRPQPVG +VEPKSW VKA TDERARTIAKQLK SAR SGLHAQ  R
Sbjct:    1 MESRATIINVLNTTGIVTIERGYEILADIKKVGGFFRPQPVGDVVEPKSWIVKARTDERARTIAKQLKKSARSSGLHAQDTR 82
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10358.281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMX9_ECTSI1.970e-4287.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10358contigE-siliculosus-1a_F_contig10358:1668..2100 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop0
Cds size246
Model size246
Exons2
Ec32 orthologEc-02_004070.1
Ec32 ortholog descriptionhypothetical protein
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927538.737103-CDS-E-siliculosus-1a_F_contig10358:1667..18701622927538.737103-CDS-E-siliculosus-1a_F_contig10358:1667..1870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10358 1668..1870 -
1696318574.8104625-CDS-E-siliculosus-1a_F_contig10358:1667..18701696318574.8104625-CDS-E-siliculosus-1a_F_contig10358:1667..1870Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10358 1668..1870 -
1622927538.7528887-CDS-E-siliculosus-1a_F_contig10358:2057..21001622927538.7528887-CDS-E-siliculosus-1a_F_contig10358:2057..2100Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10358 2058..2100 -
1696318574.8304844-CDS-E-siliculosus-1a_F_contig10358:2057..21001696318574.8304844-CDS-E-siliculosus-1a_F_contig10358:2057..2100Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10358 2058..2100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10358.281.1prot_E-siliculosus-1a_F_contig10358.281.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10358 1668..2100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10358.281.1

>prot_E-siliculosus-1a_F_contig10358.281.1 ID=prot_E-siliculosus-1a_F_contig10358.281.1|Name=mRNA_E-siliculosus-1a_F_contig10358.281.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=82bp
MESRATIINVLNATGIVTIERGYDILADIKKVGGFFRPQPVGGIVEPKSW
FVKAGTDERARTIAKQLKNSARRSGLHAQVCR
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mRNA from alignment at E-siliculosus-1a_F_contig10358:1668..2100-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10358.281.1 ID=mRNA_E-siliculosus-1a_F_contig10358.281.1|Name=mRNA_E-siliculosus-1a_F_contig10358.281.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=433bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10358:1668..2100- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAATCAAGAGCGACGATCATCAACGTCTTGAACGCTACTGGTATGAT
GAGTTTCAGTTATCTCGTATCGAAGAGGTTCGTTTTTATGTGGACGGAGG
CCCTTCTGGCGCAGAACGAATATCTTGTGTCTGTTGCGAATCGTTTGTGG
AATCCGTTCTCTGTCTGACATGGTCTCTAACTTCCTGTCGCGTTATCCTC
CTTGCCGGCCCCATGCCCCATCTTTCACAGGTATTGTGACGATCGAGCGC
GGATACGACATACTCGCGGACATCAAGAAGGTCGGCGGGTTCTTCCGGCC
TCAGCCGGTGGGCGGCATCGTTGAGCCCAAGTCCTGGTTCGTCAAGGCCG
GAACCGACGAGCGTGCGCGCACCATCGCCAAACAGCTCAAGAACAGCGCC
CGTCGCTCTGGGCTACACGCGCAGGTATGTCGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10358:1668..2100-

>mRNA_E-siliculosus-1a_F_contig10358.281.1 ID=mRNA_E-siliculosus-1a_F_contig10358.281.1|Name=mRNA_E-siliculosus-1a_F_contig10358.281.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=492bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10358:1668..2100- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGAATCAAGAGCGACGATCATCAACGTCTTGAACGCTACTGATGGAAT
CAAGAGCGACGATCATCAACGTCTTGAACGCTACTGGTATTGTGACGATC
GAGCGCGGATACGACATACTCGCGGACATCAAGAAGGTCGGCGGGTTCTT
CCGGCCTCAGCCGGTGGGCGGCATCGTTGAGCCCAAGTCCTGGTTCGTCA
AGGCCGGAACCGACGAGCGTGCGCGCACCATCGCCAAACAGCTCAAGAAC
AGCGCCCGTCGCTCTGGGCTACACGCGCAGGTATGTCGAGTATTGTGACG
ATCGAGCGCGGATACGACATACTCGCGGACATCAAGAAGGTCGGCGGGTT
CTTCCGGCCTCAGCCGGTGGGCGGCATCGTTGAGCCCAAGTCCTGGTTCG
TCAAGGCCGGAACCGACGAGCGTGCGCGCACCATCGCCAAACAGCTCAAG
AACAGCGCCCGTCGCTCTGGGCTACACGCGCAGGTATGTCGA
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