Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10355.280.1 vs. uniprot
Match: A0A6H5L505_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L505_9PHAE) HSP 1 Score: 96.3 bits (238), Expect = 9.640e-21 Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 1 Query: 175 EESDLRSPTGARRAPGFQETPEHQPSGVTAEASVVADKDALADELGQEVKRLREQGRELEA 357
EESDLRSPTGAR APGFQETP+ Q SGVTA+ASVVADKD LADELGQEVKRLREQ RELEA
Sbjct: 1066 EESDLRSPTGARHAPGFQETPKQQLSGVTAKASVVADKDTLADELGQEVKRLREQLRELEA 1126
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 360 |
| Model size | 361 |
| Exons | 2 |
| Ec32 ortholog | Ec-20_002220.1 |
| Ec32 ortholog description | Hypothetical protein |
| Hectar predicted targeting category | chloroplast |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10355.280.1 >prot_E-siliculosus-1a_F_contig10355.280.1 ID=prot_E-siliculosus-1a_F_contig10355.280.1|Name=mRNA_E-siliculosus-1a_F_contig10355.280.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=120bp
CQSIGGCLHTFALFLVVGHFSSHMLITPPAAIRTTCRPQGTPSFQTPSLE
DARGCKAGEESDLRSPTGARRAPGFQETPEHQPSGVTAEASVVADKDALA
DELGQEVKRLREQGRELEAE back to topmRNA from alignment at E-siliculosus-1a_F_contig10355:168..1980- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10355.280.1 ID=mRNA_E-siliculosus-1a_F_contig10355.280.1|Name=mRNA_E-siliculosus-1a_F_contig10355.280.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1813bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10355:168..1980- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGCCAGTCAATTGGCGGTTGCTTGCATACTTTCGCGTTGTTTCTTGTTGT
CGGACATTTTTCTTCGCACATGTTGATTACCCCTCCTGCCGCGATCCGTA
CTACTTGTCGCCCGCAGGGAACCCCCTCCTTCCAAACTCCAAGCCTGGAG
GACGCGCGTGGCTGCAAAGCTGGAGGTGACACGATATTTGCTACACTGCT
AGTAGCGTTGTTGTGTGGGACTATTTCCTCTTACGATTGAACCGCCTGCA
TGCACCAAGTATGCTAAGGCTGTGCACCACGTGGCCTCACACGAAGAACT
AAACACACGTAAGTCTGGGTATGCACGGGGGATGATTGGTCACCATAATA
TATCGGGTGGCCGCCGGCATTGTATGTACCTCTCTCTGTAAACCCGGTGT
GGATCCCACATGTTTTTGTTTGAAGGACAGACCCCATGCGACGGGTTGGC
GAACGTCCACGAGGATACGTGCCATACTTACCTACCACACGTTTTTGTGC
TCCAATGTTCTCTATGATTCTTGTAACGTGCAGAGCGTGACGAGGGCGTC
TCTCAAGCCTCCACAATTGAAATGCTCTCGCCAATTAATTCACACATGAC
GAAACGGACGCCGATATCACACGTTGGACAAGTAACCTCGAAGTGCTCAC
TCCCTTGGCCGAGCCAGCCTGACATACGACTCTCTCGCCTCCTTTGCGTC
TCGCCTGTTGCCACTGACTTGAAACACCCACCTCGCTCCAATTCATTCTT
CGTCGTGTGATGCGCCGGTGCTTGCTTGCTGCATGAATGGCGGACGCACC
CCTCTCTTCTTGGGTAGGGCAAGGCTGCGGCTGAAAAGGTCGAAATGATT
CGAGAGCTGAAGGCGAGGTTAAAGTCTACCAAGCTAGAGGTAACGGCGTT
GCTCTCGACCGTTGCCTCGCTTGAAGCGGAGATCTCAACGGTCCGAGCCT
CGCTCCAAGGAAGCCTCGACGTGAAGGAAGGTGAGGCGGCGGCGGCTGTG
GAGCGAGCTGAGCGGGCCGAGAGGACCGTGCAGCAGCTCCAGCAACAGCA
CCATCTCCACCAGCAGCAGCAGCAGCTCGAGCACCAGCAGTATATCGAGC
ACGAGCAGCGCAAGCAGCACGAGCAGCGCAAGCAGCACGAGCAGGACCGC
GCACTGTTCCACGAGCAACTATCGTTGTGCAACGGCCGGGAACATTCGGC
CGTGTCGAACGCCGCCTCTGTCCAGGCAAGCCTCGACGTGAAGGAAGGAG
AGACGGCGGCGGCCGTGGAGCGAGCCGAGAGGGCCGAGAGGGCCAAGCAG
CAGCTCCACCGCCAGCACCAGCACCAGCGGCGGCAGCTTCAGCAGGCCCA
GCAAGCCCAGCAACAGCAACAGCAACAGCGGCACCAGCAGGAGCTCTCCA
TTGTCCGAGCTTCGCTTCAGGTCAGCCTGAACACCAAGAAAGGAGAGACG
GCGGCGGCCGTAGAGCGAGCTGAGCGGGCCGAGAGGACCGTGCAGCAGCT
CCAGCAGCAGCTCCAGCGACAGCTCCAAGAGCAGCAGCAGGAGGAGGAGC
AGCAGCAGCAGCTCCAGCCCGACCATCCCGTTGTGTCTCTGACCGAAACC
ACCGCTGGCCGAACGCCGGGGGTGGCAGAGGAATCCGACCTTCGTTCGCC
CACCGGAGCTCGCCGTGCCCCTGGTTTCCAGGAGACACCCGAGCATCAGC
CGTCGGGAGTGACGGCAGAAGCAAGCGTCGTCGCCGACAAGGACGCGCTG
GCCGATGAGCTGGGACAGGAGGTGAAGCGGCTCCGAGAACAAGGTCGTGA
GCTGGAGGCGGAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10355:168..1980- >mRNA_E-siliculosus-1a_F_contig10355.280.1 ID=mRNA_E-siliculosus-1a_F_contig10355.280.1|Name=mRNA_E-siliculosus-1a_F_contig10355.280.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=720bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10355:168..1980- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGCCAGTCAATTGGCGGTTGCTTGCATACTTTCGCGTTGTTTCTTGTTGT
CGGACATTTTTCTTCGCACATGTTGATTACCCCTCCTGCCGCGATCCGTA
CTACTTGTCGCCCGCAGGGAACCCCCTCCTTCCAAACTCCAAGCCTGGAG
GACGCGCGTGGCTGCAAAGCTGGAGTGCCAGTCAATTGGCGGTTGCTTGC
ATACTTTCGCGTTGTTTCTTGTTGTCGGACATTTTTCTTCGCACATGTTG
ATTACCCCTCCTGCCGCGATCCGTACTACTTGTCGCCCGCAGGGAACCCC
CTCCTTCCAAACTCCAAGCCTGGAGGACGCGCGTGGCTGCAAAGCTGGAG
AGGAATCCGACCTTCGTTCGCCCACCGGAGCTCGCCGTGCCCCTGGTTTC
CAGGAGACACCCGAGCATCAGCCGTCGGGAGTGACGGCAGAAGCAAGCGT
CGTCGCCGACAAGGACGCGCTGGCCGATGAGCTGGGACAGGAGGTGAAGC
GGCTCCGAGAACAAGGTCGTGAGCTGGAGGCGGAGAGGAATCCGACCTTC
GTTCGCCCACCGGAGCTCGCCGTGCCCCTGGTTTCCAGGAGACACCCGAG
CATCAGCCGTCGGGAGTGACGGCAGAAGCAAGCGTCGTCGCCGACAAGGA
CGCGCTGGCCGATGAGCTGGGACAGGAGGTGAAGCGGCTCCGAGAACAAG
GTCGTGAGCTGGAGGCGGAG back to top
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