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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10346.277.1 vs. uniprot
Match: D7FYN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN2_ECTSI) HSP 1 Score: 112 bits (279), Expect = 2.290e-26 Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 Query: 1 RQSLGEITHCRAACATAEATAQAGEDARCAAVEIATTIQAQLEGAQEDVKLAQEETQTVTGHLAE 195
RQ+L EITHCRAACATAEATAQAGEDARCAAVEIATTIQAQLEGAQEDVKLAQE TQTVTGHLAE
Sbjct: 237 RQALEEITHCRAACATAEATAQAGEDARCAAVEIATTIQAQLEGAQEDVKLAQEGTQTVTGHLAE 301
BLAST of mRNA_E-siliculosus-1a_F_contig10346.277.1 vs. uniprot
Match: D7FPQ8_ECTSI (Kinesin K39 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ8_ECTSI) HSP 1 Score: 80.1 bits (196), Expect = 3.650e-15 Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = 1 Query: 1 RQSLGEITHCRAACATAEATAQAGEDARCAAVEIATTIQAQLEGAQEDVKLAQEETQTVTGHLAEARAALESSQTEAKRGHEAQDIARRS 270
RQ+ E+++CRAAC TTI+A+LEG QED++L QEET+TVTGHL EARAALE+SQ EAKR HEAQD+A S
Sbjct: 270 RQAFDELSNCRAACXXXXXXXXXXXXXXXXXXXXXTTIEAKLEGVQEDLRLTQEETRTVTGHLTEARAALETSQREAKRRHEAQDVAENS 359
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 342 |
| Model size | 344 |
| Exons | 1 |
| Hectar predicted targeting category | other localisation |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927538.284128-CDS-E-siliculosus-1a_F_contig10346:530..872 | 1622927538.284128-CDS-E-siliculosus-1a_F_contig10346:530..872 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10346 531..872 + |
| 1696318574.496696-CDS-E-siliculosus-1a_F_contig10346:530..872 | 1696318574.496696-CDS-E-siliculosus-1a_F_contig10346:530..872 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig10346 531..872 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10346.277.1 >prot_E-siliculosus-1a_F_contig10346.277.1 ID=prot_E-siliculosus-1a_F_contig10346.277.1|Name=mRNA_E-siliculosus-1a_F_contig10346.277.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=114bp
RQSLGEITHCRAACATAEATAQAGEDARCAAVEIATTIQAQLEGAQEDVK
LAQEETQTVTGHLAEARAALESSQTEAKRGHEAQDIARRSKSARVRADMA
WEESRQQGAQLTED back to topmRNA from alignment at E-siliculosus-1a_F_contig10346:531..873+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10346.277.1 ID=mRNA_E-siliculosus-1a_F_contig10346.277.1|Name=mRNA_E-siliculosus-1a_F_contig10346.277.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=343bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10346:531..873+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGCAATCTTTGGGAGAAATCACGCACTGTCGAGCAGCGTGCGCAACGGC
AGAAGCCACTGCACAAGCCGGAGAGGATGCGAGGTGCGCTGCGGTCGAGA
TCGCGACCACGATACAAGCACAGCTCGAGGGGGCGCAGGAGGACGTGAAG
CTGGCGCAAGAGGAAACCCAGACCGTCACGGGGCACCTCGCTGAGGCTCG
TGCTGCGCTAGAATCATCCCAGACGGAGGCGAAGCGCGGCCATGAGGCGC
AAGATATTGCAAGGAGGTCGAAGAGTGCTAGGGTACGTGCTGACATGGCG
TGGGAGGAGTCACGGCAGCAGGGGGCTCAGCTGACTGAGGATG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10346:531..873+ >mRNA_E-siliculosus-1a_F_contig10346.277.1 ID=mRNA_E-siliculosus-1a_F_contig10346.277.1|Name=mRNA_E-siliculosus-1a_F_contig10346.277.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10346:531..873+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGCAATCTTTGGGAGAAATCACGCACTGTCGAGCAGCGTGCGCAACGGC
AGAAGCCACTGCACAAGCCGGAGAGGATGCGAGGTGCGCTGCGGTCGAGA
TCGCGACCACGATACAAGCACAGCTCGAGGGGGCGCAGGAGGACGTGAAG
CTGGCGCAAGAGGAAACCCAGACCGTCACGGGGCACCTCGCTGAGGCTCG
TGCTGCGCTAGAATCATCCCAGACGGAGGCGAAGCGCGGCCATGAGGCGC
AAGATATTGCAAGGAGGTCGAAGAGTGCTAGGGTACGTGCTGACATGGCG
TGGGAGGAGTCACGGCAGCAGGGGGCTCAGCTGACTGAGGATCGGCAATC
TTTGGGAGAAATCACGCACTGTCGAGCAGCGTGCGCAACGGCAGAAGCCA
CTGCACAAGCCGGAGAGGATGCGAGGTGCGCTGCGGTCGAGATCGCGACC
ACGATACAAGCACAGCTCGAGGGGGCGCAGGAGGACGTGAAGCTGGCGCA
AGAGGAAACCCAGACCGTCACGGGGCACCTCGCTGAGGCTCGTGCTGCGC
TAGAATCATCCCAGACGGAGGCGAAGCGCGGCCATGAGGCGCAAGATATT
GCAAGGAGGTCGAAGAGTGCTAGGGTACGTGCTGACATGGCGTGGGAGGA
GTCACGGCAGCAGGGGGCTCAGCTGACTGAGGAT back to top
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