mRNA_E-siliculosus-1a_F_contig10346.277.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10346.277.1
Unique NamemRNA_E-siliculosus-1a_F_contig10346.277.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10346.277.1 vs. uniprot
Match: D7FYN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYN2_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.290e-26
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 RQSLGEITHCRAACATAEATAQAGEDARCAAVEIATTIQAQLEGAQEDVKLAQEETQTVTGHLAE 195
            RQ+L EITHCRAACATAEATAQAGEDARCAAVEIATTIQAQLEGAQEDVKLAQE TQTVTGHLAE
Sbjct:  237 RQALEEITHCRAACATAEATAQAGEDARCAAVEIATTIQAQLEGAQEDVKLAQEGTQTVTGHLAE 301
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BLAST of mRNA_E-siliculosus-1a_F_contig10346.277.1 vs. uniprot
Match: D7FPQ8_ECTSI (Kinesin K39 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPQ8_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.650e-15
Identity = 49/90 (54.44%), Postives = 60/90 (66.67%), Query Frame = 1 
Query:    1 RQSLGEITHCRAACATAEATAQAGEDARCAAVEIATTIQAQLEGAQEDVKLAQEETQTVTGHLAEARAALESSQTEAKRGHEAQDIARRS 270
            RQ+  E+++CRAAC                     TTI+A+LEG QED++L QEET+TVTGHL EARAALE+SQ EAKR HEAQD+A  S
Sbjct:  270 RQAFDELSNCRAACXXXXXXXXXXXXXXXXXXXXXTTIEAKLEGVQEDLRLTQEETRTVTGHLTEARAALETSQREAKRRHEAQDVAENS 359
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10346.277.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYN2_ECTSI2.290e-2695.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FPQ8_ECTSI3.650e-1554.44Kinesin K39 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10346contigE-siliculosus-1a_F_contig10346:531..873 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size342
Model size344
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927538.284128-CDS-E-siliculosus-1a_F_contig10346:530..8721622927538.284128-CDS-E-siliculosus-1a_F_contig10346:530..872Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10346 531..872 +
1696318574.496696-CDS-E-siliculosus-1a_F_contig10346:530..8721696318574.496696-CDS-E-siliculosus-1a_F_contig10346:530..872Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10346 531..872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10346.277.1prot_E-siliculosus-1a_F_contig10346.277.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10346 531..872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10346.277.1

>prot_E-siliculosus-1a_F_contig10346.277.1 ID=prot_E-siliculosus-1a_F_contig10346.277.1|Name=mRNA_E-siliculosus-1a_F_contig10346.277.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=114bp
RQSLGEITHCRAACATAEATAQAGEDARCAAVEIATTIQAQLEGAQEDVK
LAQEETQTVTGHLAEARAALESSQTEAKRGHEAQDIARRSKSARVRADMA
WEESRQQGAQLTED
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mRNA from alignment at E-siliculosus-1a_F_contig10346:531..873+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10346.277.1 ID=mRNA_E-siliculosus-1a_F_contig10346.277.1|Name=mRNA_E-siliculosus-1a_F_contig10346.277.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=343bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10346:531..873+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGCAATCTTTGGGAGAAATCACGCACTGTCGAGCAGCGTGCGCAACGGC
AGAAGCCACTGCACAAGCCGGAGAGGATGCGAGGTGCGCTGCGGTCGAGA
TCGCGACCACGATACAAGCACAGCTCGAGGGGGCGCAGGAGGACGTGAAG
CTGGCGCAAGAGGAAACCCAGACCGTCACGGGGCACCTCGCTGAGGCTCG
TGCTGCGCTAGAATCATCCCAGACGGAGGCGAAGCGCGGCCATGAGGCGC
AAGATATTGCAAGGAGGTCGAAGAGTGCTAGGGTACGTGCTGACATGGCG
TGGGAGGAGTCACGGCAGCAGGGGGCTCAGCTGACTGAGGATG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10346:531..873+

>mRNA_E-siliculosus-1a_F_contig10346.277.1 ID=mRNA_E-siliculosus-1a_F_contig10346.277.1|Name=mRNA_E-siliculosus-1a_F_contig10346.277.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10346:531..873+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGCAATCTTTGGGAGAAATCACGCACTGTCGAGCAGCGTGCGCAACGGC
AGAAGCCACTGCACAAGCCGGAGAGGATGCGAGGTGCGCTGCGGTCGAGA
TCGCGACCACGATACAAGCACAGCTCGAGGGGGCGCAGGAGGACGTGAAG
CTGGCGCAAGAGGAAACCCAGACCGTCACGGGGCACCTCGCTGAGGCTCG
TGCTGCGCTAGAATCATCCCAGACGGAGGCGAAGCGCGGCCATGAGGCGC
AAGATATTGCAAGGAGGTCGAAGAGTGCTAGGGTACGTGCTGACATGGCG
TGGGAGGAGTCACGGCAGCAGGGGGCTCAGCTGACTGAGGATCGGCAATC
TTTGGGAGAAATCACGCACTGTCGAGCAGCGTGCGCAACGGCAGAAGCCA
CTGCACAAGCCGGAGAGGATGCGAGGTGCGCTGCGGTCGAGATCGCGACC
ACGATACAAGCACAGCTCGAGGGGGCGCAGGAGGACGTGAAGCTGGCGCA
AGAGGAAACCCAGACCGTCACGGGGCACCTCGCTGAGGCTCGTGCTGCGC
TAGAATCATCCCAGACGGAGGCGAAGCGCGGCCATGAGGCGCAAGATATT
GCAAGGAGGTCGAAGAGTGCTAGGGTACGTGCTGACATGGCGTGGGAGGA
GTCACGGCAGCAGGGGGCTCAGCTGACTGAGGAT
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