mRNA_E-siliculosus-1a_F_contig10329.268.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10329.268.1
Unique NamemRNA_E-siliculosus-1a_F_contig10329.268.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10329.268.1 vs. uniprot
Match: D7FTK7_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK7_ECTSI)

HSP 1 Score: 192 bits (488), Expect = 1.130e-60
Identity = 98/136 (72.06%), Postives = 114/136 (83.82%), Query Frame = 1 
Query:    1 YLQQAWSSSDRGEATIDKDLLPLVITKSPQQDNGFDCGVY------EILQEWPIVTQADVDDGMRNHFTPELFSRSDILKERRIIRELLQTYKDRYERDLRLREANDRRAGVLSDGCASSPSDVEVVEDSTTTTPG 390
            YLQ+AWSS+DRGEAT+DKDLLPLVIT+SPQQ NG DCG+       +ILQEWPI TQA+VDDGM+ HFTPELFS SDI  ERR++R+LLQTYKDRYER+LRLRE ++RRAGVLSD  ASSPSDVEV +D  T + G
Sbjct:   22 YLQEAWSSNDRGEATVDKDLLPLVITESPQQGNGCDCGILVLRNAKDILQEWPIATQAEVDDGMQKHFTPELFSPSDISNERRMLRQLLQTYKDRYERELRLREISERRAGVLSDDSASSPSDVEVEKDHRTMSSG 157
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BLAST of mRNA_E-siliculosus-1a_F_contig10329.268.1 vs. uniprot
Match: D8LDN6_ECTSI (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDN6_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 2.850e-23
Identity = 52/99 (52.53%), Postives = 66/99 (66.67%), Query Frame = 1 
Query:    1 YLQQAWSSSDRGEATIDKDLLPLVITKSPQQDNGFDCGVY------EILQEWPIVTQADVDDGMRNHFTPELFSRSDILKERRIIRELLQTYKDRYERD 279
            YLQ  W  + RGE   D+D+ PLV  + P Q NG DCGVY      EI Q+WP+VT A+V + +  HF PELFS SDI +ERR++RELL+  K RYER+
Sbjct:  502 YLQAKWKETGRGEMLFDQDVFPLVRPRVPTQINGCDCGVYVLRYAKEICQQWPVVTAAEVKNRLSAHFRPELFSPSDITEERRMLRELLENCKVRYERE 600
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BLAST of mRNA_E-siliculosus-1a_F_contig10329.268.1 vs. uniprot
Match: A0A6H5KTD8_9PHAE (ULP_PROTEASE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTD8_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 5.350e-23
Identity = 60/136 (44.12%), Postives = 81/136 (59.56%), Query Frame = 1 
Query:    1 YLQQAWSSSDRGEATIDKDLLPLVITKSPQQDNGFDCGVY------EILQEWPIVTQADVDDGMRNHFTPELFSRSDILKERRIIRELLQTYKDRYERDLRLREANDRRAGV-----LSDGCASSPSDVEVVEDST 375
            YLQ  W  + RGE   D+ + PLV  + P Q NG DCGVY      EI Q+WP+VT A+V + +  HF PELFS SDI +ERR++RELL+  K RYER+  L ++   + G       S G ++S S  EV + +T
Sbjct:  804 YLQAKWKETGRGEMLFDQHVFPLVRPRVPTQINGCDCGVYVLRYAKEICQQWPVVTVAEVKNRLSAHFRPELFSPSDITEERRMLRELLENCKVRYEREKDLHKSKKGKKGRGNKTHFSAGASTSSSTPEVKKSAT 939
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BLAST of mRNA_E-siliculosus-1a_F_contig10329.268.1 vs. uniprot
Match: A0A6H5JQ96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ96_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.170e-16
Identity = 40/94 (42.55%), Postives = 56/94 (59.57%), Query Frame = 1 
Query:    1 YLQQAWSSSDRGEATIDKDLLPLVITKSPQQDNGFDCGVYEI-----------LQEWPIVTQADVDDGMRNHFTPELFSRSDILKERRIIRELL 249
            YLQ  W  S RGE      +LPLV  ++P Q N +D GVY +             +WP+VT ADV+DGM+ HF  +LF+ SDI +ERR++ +L+
Sbjct:    4 YLQAKWKESWRGELVFSAVVLPLVCPQAPTQTNAYDGGVYVLRFAKARSRLCPCMKWPVVTAADVNDGMQAHFNLQLFNASDITEERRMLGKLV 97
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BLAST of mRNA_E-siliculosus-1a_F_contig10329.268.1 vs. uniprot
Match: D7FID8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID8_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 2.390e-11
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:  142 IVTQADVDDGMRNHFTPELFSRSDILKERRIIRELLQTYKDRYERDLRLREANDRRAGVLSDGCASSPSDVEVVED 369
            +VT A+VD+ M+ HF+P+LFS  DI  +RR++R+LL   K RYER++  ++AN+    V S    SS  DVEVVED
Sbjct:    1 MVTTANVDNKMKEHFSPDLFSPLDITDDRRLLRKLLHDCKVRYEREVEQQQANNMDPTVESQDPTSSTPDVEVVED 76
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BLAST of mRNA_E-siliculosus-1a_F_contig10329.268.1 vs. uniprot
Match: UPI001CF49ACC (uncharacterized protein LOC122954217 isoform X1 n=4 Tax=Acropora TaxID=6127 RepID=UPI001CF49ACC)

HSP 1 Score: 51.2 bits (121), Expect = 7.300e-5
Identity = 21/43 (48.84%), Postives = 28/43 (65.12%), Query Frame = 1 
Query:    1 YLQQAWSSSDRGEATIDKDLLPLVITKSPQQDNGFDCGVYEIL 129
            +L+  W +  R    +D+  LPLV  K PQQDNG+DCGVY +L
Sbjct:  461 FLRCEWVAKKRSTLQVDEKSLPLVYPKVPQQDNGYDCGVYVLL 503
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10329.268.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FTK7_ECTSI1.130e-6072.06ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
D8LDN6_ECTSI2.850e-2352.53ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6H5KTD8_9PHAE5.350e-2344.12ULP_PROTEASE domain-containing protein n=1 Tax=Ect... [more]
A0A6H5JQ96_9PHAE1.170e-1642.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FID8_ECTSI2.390e-1148.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001CF49ACC7.300e-548.84uncharacterized protein LOC122954217 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10329contigE-siliculosus-1a_F_contig10329:758..2554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size390
Model size390
Exons3
Ec32 orthologEc-13_004750.1
Ec32 ortholog descriptionPeptidase C48, SUMO/Sentrin/Ubl1
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko01002,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.O
EC3.4.22.68
EggNOG OGsCOG5160@1,KOG0779@2759
EggNOG free text desc.protein modification by small protein removal
GOsGO:0000075,GO:0000278,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006276,GO:0006323,GO:0006464,GO:0006508,GO:0006807,GO:0006996,GO:0007049,GO:0007088,GO:0007093,GO:0007094,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016787,GO:0016926,GO:0016929,GO:0018193,GO:0018205,GO:0019538,GO:0019783,GO:0022402,GO:0030071,GO:0030261,GO:0031577,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045786,GO:0045839,GO:0045841,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051276,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0065007,GO:0070011,GO:0070122,GO:0070138,GO:0070140,GO:0070646,GO:0070647,GO:0071103,GO:0071173,GO:0071174,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903047,GO:1905818,GO:1905819,GO:2000816,GO:2001251
KEGG koko:K08596
Seed eggNOG ortholog2880.D8LDN6
Seed ortholog evalue5.4e-20
Seed ortholog score104.0
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10329.268.1prot_E-siliculosus-1a_F_contig10329.268.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10329 758..2554 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927536.5544882-CDS-E-siliculosus-1a_F_contig10329:757..8871622927536.5544882-CDS-E-siliculosus-1a_F_contig10329:757..887Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10329 758..887 -
1696318573.6094415-CDS-E-siliculosus-1a_F_contig10329:757..8871696318573.6094415-CDS-E-siliculosus-1a_F_contig10329:757..887Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10329 758..887 -
1622927536.5672305-CDS-E-siliculosus-1a_F_contig10329:1943..20831622927536.5672305-CDS-E-siliculosus-1a_F_contig10329:1943..2083Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10329 1944..2083 -
1696318573.6188161-CDS-E-siliculosus-1a_F_contig10329:1943..20831696318573.6188161-CDS-E-siliculosus-1a_F_contig10329:1943..2083Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10329 1944..2083 -
1622927536.5775676-CDS-E-siliculosus-1a_F_contig10329:2434..25541622927536.5775676-CDS-E-siliculosus-1a_F_contig10329:2434..2554Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10329 2435..2554 -
1696318573.6272562-CDS-E-siliculosus-1a_F_contig10329:2434..25541696318573.6272562-CDS-E-siliculosus-1a_F_contig10329:2434..2554Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10329 2435..2554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10329.268.1

>prot_E-siliculosus-1a_F_contig10329.268.1 ID=prot_E-siliculosus-1a_F_contig10329.268.1|Name=mRNA_E-siliculosus-1a_F_contig10329.268.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=130bp
YLQQAWSSSDRGEATIDKDLLPLVITKSPQQDNGFDCGVYEILQEWPIVT
QADVDDGMRNHFTPELFSRSDILKERRIIRELLQTYKDRYERDLRLREAN
DRRAGVLSDGCASSPSDVEVVEDSTTTTPG
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mRNA from alignment at E-siliculosus-1a_F_contig10329:758..2554-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10329.268.1 ID=mRNA_E-siliculosus-1a_F_contig10329.268.1|Name=mRNA_E-siliculosus-1a_F_contig10329.268.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1797bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10329:758..2554- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TACCTTCAGCAGGCGTGGAGCTCTAGCGACCGAGGCGAGGCTACTATCGA
CAAGGACTTACTTCCTCTCGTGATAACCAAGTCGCCTCAGCAGGACAATG
GCTTCGACTGTGGAGTGTACGTCCTACGCAATGCAAAGGCGAGCCTCTAC
CACTACCTTCGTGCCGCTAATTGCCTTGGTTGGTGCACCTCATCGTGGTT
GGTTTGGCTAGGGGAGGGGGGACGCCTTGACGACTGGTTGGCCATAGTCA
TCGCTCACCAAGACCTGCTGACCAATGACCCGGGATCAGCAGCGTTAACC
ACAGTACCGTCTTCCACGGTGGAGGAAGTTGGCGTTCTAAGTCTCCTTTC
ACTGATTTGTATGGCCGCGATTTCGTTTTCGTTTACCTTCGTCTCGACCG
TAGCCGAAGCGTCAATAAGACCGTGTCTTCATCCCTTGTCCCGCTGTGTG
GAACCGCATGTTTCTCGCCAGGAAATACTGCAGGAGTGGCCGATCGTTAC
TCAAGCAGACGTCGACGATGGAATGCGGAACCACTTCACACCGGAACTCT
TCAGCCGATCTGACATCTTGAAAGAGCGCCGGATAATCCGGGAGCTGCTG
CAGACATACAAGTGAGCCACCCGATTGTGTTACCATTTTGTGTACGTTTG
TCGTTCTGGTGACGAAACCCAAAGTTTAATTCGCTATGCGTGTCATTTGT
TTTGTCATGCTCAGTGTGGTCCAAGGGTTATTATATTACCAGAGGATAGC
TTGTACGACTGTTGGAATAACCTAGGTTTGAGACTACAGCAGTACATCAC
TTCGTTATGAAGAGGGGTCAGCAGACCGCACGTGCGCAGCAGATAACCGG
TGTTGCATGTGTGCCAAAAAGTAGAACAACAGACACACATGCAGGTTTAG
ACAACGCACCCTCAGGGGACGTGGAGACACGCCCGCAGCGAGCAAACCTT
TGACGACAACATGCAGCGGCCACCAAAATAGAGGGTGAAGCTGCAGTGAG
CTGACGGCAATCATCTGAAATACAATCGACATCTACACTGCTGGTGCAAC
CAGCCGCCCTAGATGTAGTTTCTACCAGTAAAGCCATATCGTGTGGGTGT
CAGCAGAGGTGCAGAGCAAAGGAAGCAGAGGTGCAGAGCAAAGGAGAGAC
CGTGCAGACGGTGGAGGTCGATTGGGACATGTACACAGAGAGTAGTTTCG
GTGAGTTAACAGTCATCCGGCCCGCGGGTGTCCGCATCCTTCGGAAAATC
CATGAATTCATTGAAAACACCGACGGCCTGACGACACAGGCCTGCTTGTT
ACCACGGCCTAGGAAGTTGTCTGTGTAACCCCATTCTTTGATCGCGATTA
TGTTGATGTTGGTTCTGAAGATCGACCGACAACTCTTACGTCTTGAGTCG
TACCCGGGGCTCATATCTAAGCCCCAATACTGTAGTGCCGGGCCCCCGAT
ACTTTGTTGAGATGACGCTCTTTCAATATAGTTTACACATACGGTAACGA
CCCGTGAGGTTACGTCTCCTATAAGGGGTACAGCATATGTACCAGCGTGT
CATGTCAGCGGAGGTCATCGCAACAACGCTTACGCACTAACGACTATGTC
TACCCCCCCGCCCTCATTTACGTTTCGTTTGGAAAACGGCCTTCTTCGTC
AAACCGACATGATGCAGGGACCGCTACGAACGTGACCTGCGACTGCGGGA
AGCCAACGATAGGAGGGCAGGGGTGTTGTCCGACGGCTGCGCGAGCAGCC
CTTCAGACGTGGAGGTGGTCGAGGATTCGACAACGACTACGCCCGGT
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10329:758..2554-

>mRNA_E-siliculosus-1a_F_contig10329.268.1 ID=mRNA_E-siliculosus-1a_F_contig10329.268.1|Name=mRNA_E-siliculosus-1a_F_contig10329.268.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=780bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10329:758..2554- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TACCTTCAGCAGGCGTGGAGCTCTAGCGACCGAGGCGAGGCTACTATCGA
CAAGGACTTACTTCCTCTCGTGATAACCAAGTCGCCTCAGCAGGACAATG
GCTTCGACTGTGGAGTGTACTACCTTCAGCAGGCGTGGAGCTCTAGCGAC
CGAGGCGAGGCTACTATCGACAAGGACTTACTTCCTCTCGTGATAACCAA
GTCGCCTCAGCAGGACAATGGCTTCGACTGTGGAGTGTACGAAATACTGC
AGGAGTGGCCGATCGTTACTCAAGCAGACGTCGACGATGGAATGCGGAAC
CACTTCACACCGGAACTCTTCAGCCGATCTGACATCTTGAAAGAGCGCCG
GATAATCCGGGAGCTGCTGCAGACATACAAGAAATACTGCAGGAGTGGCC
GATCGTTACTCAAGCAGACGTCGACGATGGAATGCGGAACCACTTCACAC
CGGAACTCTTCAGCCGATCTGACATCTTGAAAGAGCGCCGGATAATCCGG
GAGCTGCTGCAGACATACAAGGACCGCTACGAACGTGACCTGCGACTGCG
GGAAGCCAACGATAGGAGGGCAGGGGTGTTGTCCGACGGCTGCGCGAGCA
GCCCTTCAGACGTGGAGGTGGTCGAGGATTCGACAACGACTACGCCCGGT
GGACCGCTACGAACGTGACCTGCGACTGCGGGAAGCCAACGATAGGAGGG
CAGGGGTGTTGTCCGACGGCTGCGCGAGCAGCCCTTCAGACGTGGAGGTG
GTCGAGGATTCGACAACGACTACGCCCGGT
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