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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10321.267.1 vs. uniprot
Match: D7FHD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD6_ECTSI) HSP 1 Score: 168 bits (425), Expect = 1.680e-46 Identity = 83/89 (93.26%), Postives = 89/89 (100.00%), Query Frame = 1 Query: 1 EWSESPLRVAPAEDGRTIVSVEHEASDGVYPIQYTLRIPGRYDMRVTDVAGQVIDGGSRVVQATSVRTKASLSTATGTGLHGGVAGKRL 267
EWSESPLRVAPAEDGRTIVSV+HE+S+GVYPIQYTLRIPGRYDMR+TDVAGQVIDGGSRVVQATS+RTKASLSTATGTGLHGG+AGKRL
Sbjct: 516 EWSESPLRVAPAEDGRTIVSVDHESSNGVYPIQYTLRIPGRYDMRITDVAGQVIDGGSRVVQATSMRTKASLSTATGTGLHGGIAGKRL 604
BLAST of mRNA_E-siliculosus-1a_F_contig10321.267.1 vs. uniprot
Match: A0A6H5LGQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGQ6_9PHAE) HSP 1 Score: 159 bits (402), Expect = 2.120e-43 Identity = 86/105 (81.90%), Postives = 88/105 (83.81%), Query Frame = 1 Query: 1 EWSESPLRVAPAEDGRTIVSVEHEASDGVYPIQYTLRIPGRYDMRVTDVAGQV----------------IDGGSRVVQATSVRTKASLSTATGTGLHGGVAGKRL 267
EWSESPLRVAPAEDGRT VSVEHEAS+GVYPIQYTLRIPGRYDMR+TDVAGQV IDGGSRVVQATSVRTKASLSTATGTGLHGGVAGKRL
Sbjct: 413 EWSESPLRVAPAEDGRTSVSVEHEASNGVYPIQYTLRIPGRYDMRITDVAGQVMIRHACLCLMPPPTQVIDGGSRVVQATSVRTKASLSTATGTGLHGGVAGKRL 517
BLAST of mRNA_E-siliculosus-1a_F_contig10321.267.1 vs. uniprot
Match: D7FHC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC7_ECTSI) HSP 1 Score: 101 bits (252), Expect = 3.670e-23 Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 Query: 1 EWSESPLRVAPAEDGRTIVSVEHEASDGVYPIQYTLRIPGRYDMRVTDVAGQ 156
EWSESPLRV PAEDGRTIVSV+HEAS+GVYPIQYTLRIPGRYDM +TDVAGQ
Sbjct: 127 EWSESPLRVTPAEDGRTIVSVDHEASNGVYPIQYTLRIPGRYDMSITDVAGQ 178
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 267 |
| Model size | 269 |
| Exons | 2 |
| Hectar predicted targeting category | other localisation |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | S |
| EggNOG OGs | KOG0613@1,KOG0613@2759 |
| EggNOG free text desc. | cytoskeletal protein binding |
| Seed eggNOG ortholog | 2880.D7FHD6 |
| Seed ortholog evalue | 9.4e-40 |
| Seed ortholog score | 169.1 |
| Taxonomic scope | Eukaryota |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10321.267.1 >prot_E-siliculosus-1a_F_contig10321.267.1 ID=prot_E-siliculosus-1a_F_contig10321.267.1|Name=mRNA_E-siliculosus-1a_F_contig10321.267.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=89bp
EWSESPLRVAPAEDGRTIVSVEHEASDGVYPIQYTLRIPGRYDMRVTDVA
GQVIDGGSRVVQATSVRTKASLSTATGTGLHGGVAGKRL back to topmRNA from alignment at E-siliculosus-1a_F_contig10321:1306..1978- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10321.267.1 ID=mRNA_E-siliculosus-1a_F_contig10321.267.1|Name=mRNA_E-siliculosus-1a_F_contig10321.267.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=673bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10321:1306..1978- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAATGGAGCGAGAGCCCTCTCCGCGTGGCCCCCGCCGAAGATGGCCGCAC
GATCGTTTCCGTGGAACATGAGGCTTCCGATGGAGTGTACCCCATCCAGT
ACACTCTGCGCATCCCCGGGCGCTACGACATGCGCGTCACGGACGTGGCG
GGACAGGTGTGACATTTCTGGAGAATCAATTGTTGCCCGGGTGGCATACA
TGCGTGTCACGCGCTAGCTTGTTCACGACGGTACACAACATGGATTTTCG
ACAATGCACTTAGCCAAACATTTAGCAGTGTGCGGAACAACACCGGCCAA
TGGCATGTATGCCATGTGTAGTGGACACCATTCGACGCACCGCTTGCACT
TGCATAGAGGTCACATTGGCCCGATTGTACGCACGAATTAACACAATCGG
TGTACTTGCACGCAATATATCGAGCAGTTTAGACCACTATCGCTTCAGAC
TTCATCAATCCATGTCCCACACGTAGAGTCACGCGCTTGCTGACTTTCAG
CGTCCCCTGTGAAGGTTATGATAAGACATACTTCCCCGTGCCTGATGCCC
CCGTCCACCCAGGTGATCGATGGCGGGTCTCGAGTCGTCCAAGCAACCAG
CGTGCGCACCAAGGCTTCCTTGTCGACGGCAACGGGCACTGGCCTTCACG
GGGGAGTTGCAGGGAAGCGCCTG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10321:1306..1978- >mRNA_E-siliculosus-1a_F_contig10321.267.1 ID=mRNA_E-siliculosus-1a_F_contig10321.267.1|Name=mRNA_E-siliculosus-1a_F_contig10321.267.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10321:1306..1978- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAATGGAGCGAGAGCCCTCTCCGCGTGGCCCCCGCCGAAGATGGCCGCAC
GATCGTTTCCGTGGAACATGAGGCTTCCGATGGAGTGTACCCCATCCAGT
ACACTCTGCGCATCCCCGGGCGCTACGACATGCGCGTCACGGACGTGGCG
GGACAGGAATGGAGCGAGAGCCCTCTCCGCGTGGCCCCCGCCGAAGATGG
CCGCACGATCGTTTCCGTGGAACATGAGGCTTCCGATGGAGTGTACCCCA
TCCAGTACACTCTGCGCATCCCCGGGCGCTACGACATGCGCGTCACGGAC
GTGGCGGGACAGGTGATCGATGGCGGGTCTCGAGTCGTCCAAGCAACCAG
CGTGCGCACCAAGGCTTCCTTGTCGACGGCAACGGGCACTGGCCTTCACG
GGGGAGTTGCAGGGAAGCGCCTGGTGATCGATGGCGGGTCTCGAGTCGTC
CAAGCAACCAGCGTGCGCACCAAGGCTTCCTTGTCGACGGCAACGGGCAC
TGGCCTTCACGGGGGAGTTGCAGGGAAGCGCCTG back to top
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