mRNA_E-siliculosus-1a_F_contig10321.267.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10321.267.1
Unique NamemRNA_E-siliculosus-1a_F_contig10321.267.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10321.267.1 vs. uniprot
Match: D7FHD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHD6_ECTSI)

HSP 1 Score: 168 bits (425), Expect = 1.680e-46
Identity = 83/89 (93.26%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 EWSESPLRVAPAEDGRTIVSVEHEASDGVYPIQYTLRIPGRYDMRVTDVAGQVIDGGSRVVQATSVRTKASLSTATGTGLHGGVAGKRL 267
            EWSESPLRVAPAEDGRTIVSV+HE+S+GVYPIQYTLRIPGRYDMR+TDVAGQVIDGGSRVVQATS+RTKASLSTATGTGLHGG+AGKRL
Sbjct:  516 EWSESPLRVAPAEDGRTIVSVDHESSNGVYPIQYTLRIPGRYDMRITDVAGQVIDGGSRVVQATSMRTKASLSTATGTGLHGGIAGKRL 604
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BLAST of mRNA_E-siliculosus-1a_F_contig10321.267.1 vs. uniprot
Match: A0A6H5LGQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LGQ6_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.120e-43
Identity = 86/105 (81.90%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:    1 EWSESPLRVAPAEDGRTIVSVEHEASDGVYPIQYTLRIPGRYDMRVTDVAGQV----------------IDGGSRVVQATSVRTKASLSTATGTGLHGGVAGKRL 267
            EWSESPLRVAPAEDGRT VSVEHEAS+GVYPIQYTLRIPGRYDMR+TDVAGQV                IDGGSRVVQATSVRTKASLSTATGTGLHGGVAGKRL
Sbjct:  413 EWSESPLRVAPAEDGRTSVSVEHEASNGVYPIQYTLRIPGRYDMRITDVAGQVMIRHACLCLMPPPTQVIDGGSRVVQATSVRTKASLSTATGTGLHGGVAGKRL 517
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BLAST of mRNA_E-siliculosus-1a_F_contig10321.267.1 vs. uniprot
Match: D7FHC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHC7_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.670e-23
Identity = 47/52 (90.38%), Postives = 50/52 (96.15%), Query Frame = 1 
Query:    1 EWSESPLRVAPAEDGRTIVSVEHEASDGVYPIQYTLRIPGRYDMRVTDVAGQ 156
            EWSESPLRV PAEDGRTIVSV+HEAS+GVYPIQYTLRIPGRYDM +TDVAGQ
Sbjct:  127 EWSESPLRVTPAEDGRTIVSVDHEASNGVYPIQYTLRIPGRYDMSITDVAGQ 178
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10321.267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHD6_ECTSI1.680e-4693.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LGQ6_9PHAE2.120e-4381.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHC7_ECTSI3.670e-2390.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10321contigE-siliculosus-1a_F_contig10321:1306..1978 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size267
Model size269
Exons2
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGsKOG0613@1,KOG0613@2759
EggNOG free text desc.cytoskeletal protein binding
Seed eggNOG ortholog2880.D7FHD6
Seed ortholog evalue9.4e-40
Seed ortholog score169.1
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927536.5020967-CDS-E-siliculosus-1a_F_contig10321:1305..14161622927536.5020967-CDS-E-siliculosus-1a_F_contig10321:1305..1416Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10321 1306..1416 -
1696318573.5885262-CDS-E-siliculosus-1a_F_contig10321:1305..14161696318573.5885262-CDS-E-siliculosus-1a_F_contig10321:1305..1416Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10321 1306..1416 -
1622927536.518719-CDS-E-siliculosus-1a_F_contig10321:1822..19781622927536.518719-CDS-E-siliculosus-1a_F_contig10321:1822..1978Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10321 1823..1978 -
1696318573.601155-CDS-E-siliculosus-1a_F_contig10321:1822..19781696318573.601155-CDS-E-siliculosus-1a_F_contig10321:1822..1978Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10321 1823..1978 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10321.267.1prot_E-siliculosus-1a_F_contig10321.267.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10321 1306..1978 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10321.267.1

>prot_E-siliculosus-1a_F_contig10321.267.1 ID=prot_E-siliculosus-1a_F_contig10321.267.1|Name=mRNA_E-siliculosus-1a_F_contig10321.267.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=89bp
EWSESPLRVAPAEDGRTIVSVEHEASDGVYPIQYTLRIPGRYDMRVTDVA
GQVIDGGSRVVQATSVRTKASLSTATGTGLHGGVAGKRL
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mRNA from alignment at E-siliculosus-1a_F_contig10321:1306..1978-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10321.267.1 ID=mRNA_E-siliculosus-1a_F_contig10321.267.1|Name=mRNA_E-siliculosus-1a_F_contig10321.267.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=673bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10321:1306..1978- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAATGGAGCGAGAGCCCTCTCCGCGTGGCCCCCGCCGAAGATGGCCGCAC
GATCGTTTCCGTGGAACATGAGGCTTCCGATGGAGTGTACCCCATCCAGT
ACACTCTGCGCATCCCCGGGCGCTACGACATGCGCGTCACGGACGTGGCG
GGACAGGTGTGACATTTCTGGAGAATCAATTGTTGCCCGGGTGGCATACA
TGCGTGTCACGCGCTAGCTTGTTCACGACGGTACACAACATGGATTTTCG
ACAATGCACTTAGCCAAACATTTAGCAGTGTGCGGAACAACACCGGCCAA
TGGCATGTATGCCATGTGTAGTGGACACCATTCGACGCACCGCTTGCACT
TGCATAGAGGTCACATTGGCCCGATTGTACGCACGAATTAACACAATCGG
TGTACTTGCACGCAATATATCGAGCAGTTTAGACCACTATCGCTTCAGAC
TTCATCAATCCATGTCCCACACGTAGAGTCACGCGCTTGCTGACTTTCAG
CGTCCCCTGTGAAGGTTATGATAAGACATACTTCCCCGTGCCTGATGCCC
CCGTCCACCCAGGTGATCGATGGCGGGTCTCGAGTCGTCCAAGCAACCAG
CGTGCGCACCAAGGCTTCCTTGTCGACGGCAACGGGCACTGGCCTTCACG
GGGGAGTTGCAGGGAAGCGCCTG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10321:1306..1978-

>mRNA_E-siliculosus-1a_F_contig10321.267.1 ID=mRNA_E-siliculosus-1a_F_contig10321.267.1|Name=mRNA_E-siliculosus-1a_F_contig10321.267.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10321:1306..1978- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GAATGGAGCGAGAGCCCTCTCCGCGTGGCCCCCGCCGAAGATGGCCGCAC
GATCGTTTCCGTGGAACATGAGGCTTCCGATGGAGTGTACCCCATCCAGT
ACACTCTGCGCATCCCCGGGCGCTACGACATGCGCGTCACGGACGTGGCG
GGACAGGAATGGAGCGAGAGCCCTCTCCGCGTGGCCCCCGCCGAAGATGG
CCGCACGATCGTTTCCGTGGAACATGAGGCTTCCGATGGAGTGTACCCCA
TCCAGTACACTCTGCGCATCCCCGGGCGCTACGACATGCGCGTCACGGAC
GTGGCGGGACAGGTGATCGATGGCGGGTCTCGAGTCGTCCAAGCAACCAG
CGTGCGCACCAAGGCTTCCTTGTCGACGGCAACGGGCACTGGCCTTCACG
GGGGAGTTGCAGGGAAGCGCCTGGTGATCGATGGCGGGTCTCGAGTCGTC
CAAGCAACCAGCGTGCGCACCAAGGCTTCCTTGTCGACGGCAACGGGCAC
TGGCCTTCACGGGGGAGTTGCAGGGAAGCGCCTG
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