mRNA_E-siliculosus-1a_F_contig1445.2602.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: D8LSC2_ECTSI (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSC2_ECTSI) HSP 1 Score: 162 bits (411), Expect = 3.000e-47 Identity = 82/84 (97.62%), Postives = 82/84 (97.62%), Query Frame = 1
Query: 1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDRSFLLHTPEQVRMLLDCD 252
GLQERSLSA LRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGY DRSFLLHTPEQVRMLLDCD
Sbjct: 283 GLQERSLSAVLRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYADRSFLLHTPEQVRMLLDCD 366
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: W7T6J5_9STRA (Conserved oligomeric Golgi complex subunit 6 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=W7T6J5_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.070e-17 Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1
Query: 1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDR-SFLLHTPEQVRMLLDCD 252
GL S++ + +FY LFTL P FERL++P RA AR+ T+ ++A+ HE H L R +SGY D +FL HTPEQV++LLDCD
Sbjct: 636 GLDSESVTRTMEAFYRGLFTL--PQFERLQQPALRARARQQTSAIIAQRHEKAHALFRRAESGYPDHETFLAHTPEQVKILLDCD 718
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A836CBI3_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI3_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 8.380e-16 Identity = 38/85 (44.71%), Postives = 62/85 (72.94%), Query Frame = 1
Query: 1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDR-SFLLHTPEQVRMLLDCD 252
GL+ ++++A+ +FYS+LF+L MP+ ER+R P + AR+ ++ +A+AH +H ++S +GY D SFL HTP+QVR++LDCD
Sbjct: 588 GLEAHTVASAMAAFYSALFSLTMPELERVRAPLVKGRARQLSSRQIADAHAHLHGVLSAPAAGYRDAASFLSHTPDQVRIILDCD 672
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A7S2S2C7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S2C7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.140e-15 Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDRSFLLHTPEQVRMLLDC 249
GL S+ A+ FYS++F L +P FERL R AR+ A +A AH++V+ LV + Y D SFL HTPEQVRMLLDC
Sbjct: 646 GLDAASVERAMLDFYSTIFALAVPSFERLAPLEVREAARKGVAERIANAHQSVYNLVKDPANKYGDSSFLQHTPEQVRMLLDC 728
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A7S2SLV6_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SLV6_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 4.260e-13 Identity = 38/86 (44.19%), Postives = 54/86 (62.79%), Query Frame = 1
Query: 1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVD----RSFLLHTPEQVRMLLD 246
G+ SL +AL SFY SLF+LVMP+F+RL P RA AR +TA +A ++E + V ++ +D + LLH P+QVR L+D
Sbjct: 555 GMDIESLRSALDSFYKSLFSLVMPEFDRLTSPRLRASARNATAQTIANSYEAFYNAVMDKERSGIDEASLKGILLHNPQQVRQLVD 640
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A7R9UAD7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAD7_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.560e-12 Identity = 34/77 (44.16%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 16 SLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDRSFLLHTPEQVRMLLD 246
++ + +F +LFT+ +PDFER+ P + AR T VA+ + T+ +V E GY DRSFL+H PEQVR+LLD
Sbjct: 336 AVRVVIDAFNGALFTIFVPDFERITDPDEKNTARVDTMTKVADGYATIWEMVMDEKQGYADRSFLVHAPEQVRILLD 412
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: B8BWC7_THAPS (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BWC7_THAPS) HSP 1 Score: 65.9 bits (159), Expect = 1.190e-10 Identity = 32/81 (39.51%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDRSFLLHTPEQVRMLL 243
GL + + AA++ FYSSLF+ +P FE ++ P R AR TA+ V + + ++ ++ E GY D +FL H P+QV+ LL
Sbjct: 793 GLSQSEVEAAMKQFYSSLFSPPIPTFEEIKDPELRKFARSKTALRVVDVYRELYDAMTSEKGGYADFAFLGHEPDQVKTLL 873
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A8J2SC57_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC57_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 1.600e-10 Identity = 35/82 (42.68%), Postives = 53/82 (64.63%), Query Frame = 1
Query: 4 LQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSG-YVDRSFLLHTPEQVRMLLD 246
+ +LSAALR+FYS+LF PD + RA+A+ A ++A AH +V+ L + E +G Y + FL+H+P+QVR+LLD
Sbjct: 625 ISRETLSAALRAFYSALFQDPAPDLGAIAPDARRAEAKSLCAKILAHAHASVYALAADEGTGGYGETDFLVHSPDQVRVLLD 706
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A7S3LLI7_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LLI7_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 3.900e-10 Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHRLVSREDSGYVDRSF---LLHTPEQV-RMLLD 246
G+ SL AA FY S+F++VMP+F+RL P R AR STA +A + ++ +S +SGY L+H PEQV + +LD
Sbjct: 333 GMDPASLQAAFSKFYQSMFSMVMPEFDRLNNPRLRTTARNSTARSIAMGYVRLYNALSNPESGYSKEELERILVHAPEQVSKYILD 418
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Match: A0A2R5GVE9_9STRA (Conserved oligomeric Golgi complex subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GVE9_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 2.660e-9 Identity = 38/86 (44.19%), Postives = 50/86 (58.14%), Query Frame = 1
Query: 1 GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHETVHR-LVSREDSGYVDR---SFLLHTPEQVRMLLD 246
G+ +L L SFY S+F+LVMP+F+RL P RA AR +TA +A +E + L SGY + LLH P+QVR LLD
Sbjct: 601 GMTLDALREVLDSFYKSMFSLVMPEFDRLSSPRLRASARNATAGAIAATYEQFYATLQDLSRSGYQPAQLSNILLHDPQQVRQLLD 686 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1445.2602.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1445.2602.1 >prot_E-siliculosus-1a_F_contig1445.2602.1 ID=prot_E-siliculosus-1a_F_contig1445.2602.1|Name=mRNA_E-siliculosus-1a_F_contig1445.2602.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=85bp GLQERSLSAALRSFYSSLFTLVMPDFERLRRPGTRADARRSTAMLVAEAHback to top mRNA from alignment at E-siliculosus-1a_F_contig1445:65..618+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig1445.2602.1 ID=mRNA_E-siliculosus-1a_F_contig1445.2602.1|Name=mRNA_E-siliculosus-1a_F_contig1445.2602.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1445:65..618+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1445:65..618+ >mRNA_E-siliculosus-1a_F_contig1445.2602.1 ID=mRNA_E-siliculosus-1a_F_contig1445.2602.1|Name=mRNA_E-siliculosus-1a_F_contig1445.2602.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=510bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1445:65..618+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |