prot_E-siliculosus-1a_F_contig1435.2555.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1435.2555.1
Unique Nameprot_E-siliculosus-1a_F_contig1435.2555.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length226
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: A0A6H5L4W8_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W8_9PHAE)

HSP 1 Score: 429 bits (1103), Expect = 4.910e-150
Identity = 211/225 (93.78%), Postives = 218/225 (96.89%), Query Frame = 0
Query:    1 MIKSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYEIHTHVSVKKRGGGDAEGSLPSPPAAGGTAAETSGRGGGRDGGAGMSGGAAIVDGKKGPEFRSLVYRRGLAAEPPEEKARRPKPLDQLRSWIARDVQAAAPGSRGEGGMDTRLVEDIVRALLKDNDVDTQDGYCTVKEQLQGFLFENTAPFLHELWCFRWSKARMPAYDREAVYRPRPRQG 225
            MI SCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYEIHTH++VK+RGGG+AEGSLPSPPAAGGTAAETSGRGGG D GAG S GAA+VDGKKGPEFRSLVYRRGLAAEPPEEKARRPKPLDQLRSWIARDVQAAAPG+RGEG MDTRLVEDIVRALLK+NDVDTQDGYCTVKEQLQGFLFENTAPFLHELWCFRWSKARMPAYDREAVYRPRP QG
Sbjct:  107 MIGSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYEIHTHLAVKERGGGNAEGSLPSPPAAGGTAAETSGRGGGVDEGAGASWGAAVVDGKKGPEFRSLVYRRGLAAEPPEEKARRPKPLDQLRSWIARDVQAAAPGTRGEGEMDTRLVEDIVRALLKENDVDTQDGYCTVKEQLQGFLFENTAPFLHELWCFRWSKARMPAYDREAVYRPRPTQG 331          
BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: D7G117_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G117_ECTSI)

HSP 1 Score: 324 bits (831), Expect = 1.750e-110
Identity = 168/209 (80.38%), Postives = 173/209 (82.78%), Query Frame = 0
Query:   16 EWLKASDRCPLCKVTVSRVLHEIKSPKDYEIHTHVSVKKRGGGDAEGSLPSPPAAGGTAAETSGRGGGRDGGAGMSGGAAIVDGKKGPEFRSLVYRRGLAAEPPEEKARRPKPLDQLRSWIARDVQAAAPGSRGEGGMDTRLVEDIVRALLKDNDVDTQDGYCTVKEQLQGFLFENTAPFLHELWCFRWSKARMPAYDREAVYRPRPRQ 224
            +WLKASDRCPLCKVTVSRVLHEIKSPKDYEI+THVSVKKRG                    TSG       GA  SGGAA+VDG+ GPEFRSLVYRRGLAAEPP EKARRPKPLDQLRSWIARDVQAAAPG+RG GGMDTRLVEDIVRALLKDNDVDTQDGYCTVKEQ  GFLFENTAPFLHELWCFRWSKARMPAYDR AVYRPRP Q
Sbjct:    2 QWLKASDRCPLCKVTVSRVLHEIKSPKDYEIYTHVSVKKRGXXXXXXXXXXXXXXXXXXXXTSGXXXXXXEGARASGGAAVVDGRTGPEFRSLVYRRGLAAEPPAEKARRPKPLDQLRSWIARDVQAAAPGTRGGGGMDTRLVEDIVRALLKDNDVDTQDGYCTVKEQ--GFLFENTAPFLHELWCFRWSKARMPAYDRRAVYRPRPTQ 208          
BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: A0A3R7MLJ3_PENVA (RING-type domain-containing protein n=3 Tax=Penaeus TaxID=133894 RepID=A0A3R7MLJ3_PENVA)

HSP 1 Score: 55.1 bits (131), Expect = 3.200e-5
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    4 SCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYE 45
            SC H +C VCL EW K    CPLCK+T ++++H+IKS  +Y+
Sbjct:   66 SCLHSFCLVCLKEWAKQKAVCPLCKLTFTKIMHDIKSETEYK 107          
BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: UPI000F691E02 (uncharacterized protein LOC113822888 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F691E02)

HSP 1 Score: 55.1 bits (131), Expect = 3.320e-5
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    4 SCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYE 45
            SC H +C VCL EW K    CPLCK+T ++++H+IKS  +Y+
Sbjct:   67 SCLHSFCLVCLKEWAKQKAVCPLCKLTFTKIMHDIKSETEYK 108          
BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: UPI001C713312 (E3 ubiquitin-protein ligase Topors-like n=2 Tax=Penaeus TaxID=133894 RepID=UPI001C713312)

HSP 1 Score: 55.1 bits (131), Expect = 3.340e-5
Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0
Query:    4 SCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYE 45
            SC H +C VCL EW K    CPLCK+T ++++H+IKS  +Y+
Sbjct:   67 SCLHSFCLVCLKEWAKQKAVCPLCKLTFTKIMHDIKSETEYK 108          
BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: V4BH35_LOTGI (RING-type domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BH35_LOTGI)

HSP 1 Score: 54.7 bits (130), Expect = 3.790e-5
Identity = 19/42 (45.24%), Postives = 29/42 (69.05%), Query Frame = 0
Query:    4 SCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYE 45
            SC H++C VCL EW K  + CPLCK +   ++H ++S +DY+
Sbjct:   73 SCFHMFCFVCLLEWSKVKNECPLCKQSFKSIIHNVRSYEDYD 114          
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L4W8_9PHAE4.910e-15093.78RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G117_ECTSI1.750e-11080.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A3R7MLJ3_PENVA3.200e-550.00RING-type domain-containing protein n=3 Tax=Penaeu... [more]
UPI000F691E023.320e-550.00uncharacterized protein LOC113822888 n=1 Tax=Penae... [more]
UPI001C7133123.340e-550.00E3 ubiquitin-protein ligase Topors-like n=2 Tax=Pe... [more]
V4BH35_LOTGI3.790e-545.24RING-type domain-containing protein (Fragment) n=1... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..49
e-value: 1.7E-9
score: 38.8
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 2..27
e-value: 1.0E-4
score: 22.1
NoneNo IPR availablePANTHERPTHR46077FAMILY NOT NAMEDcoord: 2..219
NoneNo IPR availablePANTHERPTHR46077:SF1TOP1 BINDING ARGININE/SERINE RICH PROTEINcoord: 2..219
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 3..34
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 5..14
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 5..28
score: 8.949

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1435contigE-siliculosus-1a_F_contig1435:11569..14209 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1435.2555.1mRNA_E-siliculosus-1a_F_contig1435.2555.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1435 11257..15086 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1435.2555.1 ID=prot_E-siliculosus-1a_F_contig1435.2555.1|Name=mRNA_E-siliculosus-1a_F_contig1435.2555.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=226bp
MIKSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYEIHTHV
SVKKRGGGDAEGSLPSPPAAGGTAAETSGRGGGRDGGAGMSGGAAIVDGK
KGPEFRSLVYRRGLAAEPPEEKARRPKPLDQLRSWIARDVQAAAPGSRGE
GGMDTRLVEDIVRALLKDNDVDTQDGYCTVKEQLQGFLFENTAPFLHELW
CFRWSKARMPAYDREAVYRPRPRQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR017907Znf_RING_CS
IPR018957Znf_C3HC4_RING-type
IPR013083Znf_RING/FYVE/PHD