mRNA_E-siliculosus-1a_F_contig1435.2555.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1435.2555.1
Unique NamemRNA_E-siliculosus-1a_F_contig1435.2555.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: A0A6H5L4W8_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4W8_9PHAE)

HSP 1 Score: 474 bits (1221), Expect = 5.370e-164
Identity = 232/246 (94.31%), Postives = 239/246 (97.15%), Query Frame = 3 
Query:  222 STDAFRGHHCPICLGLVEDSAMIKSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYEIHTHVSVKKRGGGDAEGSLPSPPAAGGTAAETSGRGGGRDGGAGMSGGAAIVDGKKGPEFRSLVYRRGLAAEPPEEKARRPKPLDQLRSWIARDVQAAAPGSRGEGGMDTRLVEDIVRALLKDNDVDTQDGYCTVKEQLQGFLFENTAPFLHELWCFRWSKARMPAYDREAVYRPRPRQG 959
            STDAFRGHHCPICLGLVEDSAMI SCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYEIHTH++VK+RGGG+AEGSLPSPPAAGGTAAETSGRGGG D GAG S GAA+VDGKKGPEFRSLVYRRGLAAEPPEEKARRPKPLDQLRSWIARDVQAAAPG+RGEG MDTRLVEDIVRALLK+NDVDTQDGYCTVKEQLQGFLFENTAPFLHELWCFRWSKARMPAYDREAVYRPRP QG
Sbjct:   86 STDAFRGHHCPICLGLVEDSAMIGSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYEIHTHLAVKERGGGNAEGSLPSPPAAGGTAAETSGRGGGVDEGAGASWGAAVVDGKKGPEFRSLVYRRGLAAEPPEEKARRPKPLDQLRSWIARDVQAAAPGTRGEGEMDTRLVEDIVRALLKENDVDTQDGYCTVKEQLQGFLFENTAPFLHELWCFRWSKARMPAYDREAVYRPRPTQG 331
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BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: D7G117_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G117_ECTSI)

HSP 1 Score: 325 bits (832), Expect = 6.390e-107
Identity = 168/209 (80.38%), Postives = 173/209 (82.78%), Query Frame = 3 
Query:  330 EWLKASDRCPLCKVTVSRVLHEIKSPKDYEIHTHVSVKKRGGGDAEGSLPSPPAAGGTAAETSGRGGGRDGGAGMSGGAAIVDGKKGPEFRSLVYRRGLAAEPPEEKARRPKPLDQLRSWIARDVQAAAPGSRGEGGMDTRLVEDIVRALLKDNDVDTQDGYCTVKEQLQGFLFENTAPFLHELWCFRWSKARMPAYDREAVYRPRPRQ 956
            +WLKASDRCPLCKVTVSRVLHEIKSPKDYEI+THVSVKKRG                    TSG       GA  SGGAA+VDG+ GPEFRSLVYRRGLAAEPP EKARRPKPLDQLRSWIARDVQAAAPG+RG GGMDTRLVEDIVRALLKDNDVDTQDGYCTVKEQ  GFLFENTAPFLHELWCFRWSKARMPAYDR AVYRPRP Q
Sbjct:    2 QWLKASDRCPLCKVTVSRVLHEIKSPKDYEIYTHVSVKKRGXXXXXXXXXXXXXXXXXXXXTSGXXXXXXEGARASGGAAVVDGRTGPEFRSLVYRRGLAAEPPAEKARRPKPLDQLRSWIARDVQAAAPGTRGGGGMDTRLVEDIVRALLKDNDVDTQDGYCTVKEQ--GFLFENTAPFLHELWCFRWSKARMPAYDRRAVYRPRPTQ 208
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BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: UPI001C713312 (E3 ubiquitin-protein ligase Topors-like n=2 Tax=Penaeus TaxID=133894 RepID=UPI001C713312)

HSP 1 Score: 73.2 bits (178), Expect = 5.140e-10
Identity = 77/277 (27.80%), Postives = 107/277 (38.63%), Query Frame = 3 
Query:  249 CPICLGLVEDSAMIKSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSP---KDYEIHTHVSVKKRGGG--------DAEGS------LPSPPAAGGTAAETSGRGGGRDGGAGMSGGAAIVDG-KKGPE--------------FRSLVYRRGLAAEP------------PEEKARRPKPLDQLRSWIARDVQAAAPGSRGEGGMDTRLVEDIVRALLKDNDVDTQDGYCTVKEQLQGFLFENTAPFLHELWCFRWSKARMPAYDREAVYRPR 947
            CPICLG + D  +  SC H +C VCL EW K    CPLCK+T ++++H+IKS    K++++     V +R  G        DAE          + P A        GR               I D    GP               FR  VY   +  +P            PE    +P    +L  WI R++ A  P SR  G +   ++E I R  +   +          K  LQ  L   T  F+HE + F  S   M  +D  + Y PR
Sbjct:   52 CPICLGHITDKCVADSCLHSFCLVCLKEWAKQKAVCPLCKLTFTKIMHDIKSETEYKEWKVPRPDPVAERSAGIPNIQEYLDAERRRFFGYRTTNFPGAATIRRFHPGR-------------IVIPDALPSGPRERRPTRYNLRGSSMFRLSVYLNNVWVQPIADITGRYRQTSPELYREQPALTHRLVPWINRELAALLPSSR-IGAVLAEVMELIERHAINSREF---------KRALQVHLGRRTNHFIHEFYHFARSPYDMVGHDNASHYLPR 305
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BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: A0A6G0XD46_9STRA (RING-type domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XD46_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 1.510e-9
Identity = 65/246 (26.42%), Postives = 96/246 (39.02%), Query Frame = 3 
Query:  249 CPICLGLVEDSAMIKSCRHLYCKVCLFEWLK------ASDRCPLCKVTVSRVLHEIKSPKDYEIHTHVSVKKRGGGDAEGSLPSPPAAGGTAAETSGRGGGRDGGAGMSGGAAIVDGKKGPEFRSLVYRRGLAAEPPEEKARRP---KPLDQLRSWIARDVQAAAPGSRGEGGMDTRLVEDIV-----------RALLKDNDVDTQDGYCTVKEQLQGFLFENTAPFLHELWCFRWSKARMPAYDR 926
            CP+CL  ++   ++K C H +C  C+  W +      A  +CP+C++    VL  +KS  DY++   V V        +GS         T A T  R                         R ++YRR      PE         K  DQ + WI R++             DT L+  IV           RA  +     T   Y +++E L GFLFE++A F+ EL  F  S+  M  YD+
Sbjct:   64 CPVCLKSLDQGVLVKDCLHEFCFACISAWARHLALHRAPVKCPICRLPFQNVLANLKSATDYDV---VDV-------LDGS---------TQASTEER------------------------KRRMIYRRRQEPVVPETTTMWDPVWKTNDQAKEWIDRELHVLLGDDT-----DTTLLLQIVFKFLDQARHFNRATHETKRQKTSHPYESLREALDGFLFEDSALFVRELSKFMASRLNMVTYDK 261
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BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: A0A3R7MLJ3_PENVA (RING-type domain-containing protein n=3 Tax=Penaeus TaxID=133894 RepID=A0A3R7MLJ3_PENVA)

HSP 1 Score: 70.9 bits (172), Expect = 2.490e-9
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 3 
Query:  249 CPICLGLVEDSAMIKSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYE 419
            CPICLG + D  +  SC H +C VCL EW K    CPLCK+T ++++H+IKS  +Y+
Sbjct:   51 CPICLGHITDKCVADSCLHSFCLVCLKEWAKQKAVCPLCKLTFTKIMHDIKSETEYK 107
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BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: UPI000FD6484A (E3 ubiquitin-protein ligase Topors-like n=1 Tax=Corapipo altera TaxID=415028 RepID=UPI000FD6484A)

HSP 1 Score: 65.5 bits (158), Expect = 2.690e-9
Identity = 24/57 (42.11%), Postives = 39/57 (68.42%), Query Frame = 3 
Query:  249 CPICLGLVEDSAMIKSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYE 419
            CPICLG +E++  ++ C+H +C +C+ EW K ++ CPLCK    R+LH + +  +YE
Sbjct:   19 CPICLGDLENATYVEVCQHCFCFICIREWAKLTETCPLCKQPFERLLHTVTADGNYE 75
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BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: UPI000F691E02 (uncharacterized protein LOC113822888 n=1 Tax=Penaeus vannamei TaxID=6689 RepID=UPI000F691E02)

HSP 1 Score: 70.9 bits (172), Expect = 2.730e-9
Identity = 28/57 (49.12%), Postives = 39/57 (68.42%), Query Frame = 3 
Query:  249 CPICLGLVEDSAMIKSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYE 419
            CPICLG + D  +  SC H +C VCL EW K    CPLCK+T ++++H+IKS  +Y+
Sbjct:   52 CPICLGHITDKCVADSCLHSFCLVCLKEWAKQKAVCPLCKLTFTKIMHDIKSETEYK 108
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BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: UPI0013CE4681 (E3 ubiquitin-protein ligase Topors-like n=2 Tax=Pipridae TaxID=114313 RepID=UPI0013CE4681)

HSP 1 Score: 64.3 bits (155), Expect = 9.010e-9
Identity = 24/57 (42.11%), Postives = 38/57 (66.67%), Query Frame = 3 
Query:  249 CPICLGLVEDSAMIKSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYE 419
            CPICLG +E++  ++ C+H +C +C+ EW K ++ CPLCK    R+LH +    +YE
Sbjct:   19 CPICLGDLENATYVEVCQHCFCFICIREWAKLTETCPLCKQPFERLLHTVTVDGNYE 75
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BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: A0A8C3QP55_9PASS (RING-type domain-containing protein n=1 Tax=Cyanoderma ruficeps TaxID=181631 RepID=A0A8C3QP55_9PASS)

HSP 1 Score: 62.8 bits (151), Expect = 1.600e-8
Identity = 23/57 (40.35%), Postives = 38/57 (66.67%), Query Frame = 3 
Query:  249 CPICLGLVEDSAMIKSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYE 419
            CPICLG +E+   ++ CRH +C +C++EW K ++ CPLCK    R+L  +++   +E
Sbjct:   33 CPICLGDLENVTYVEVCRHRFCFICIWEWAKVTETCPLCKQPFKRLLLTVRADNSHE 89
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BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Match: V4BH35_LOTGI (RING-type domain-containing protein (Fragment) n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BH35_LOTGI)

HSP 1 Score: 67.8 bits (164), Expect = 1.710e-8
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 3 
Query:  246 HCPICLGLVEDSAMIKSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYE 419
            +C ICLG +E+ +   SC H++C VCL EW K  + CPLCK +   ++H ++S +DY+
Sbjct:   57 NCSICLGKLENKSFTDSCFHMFCFVCLLEWSKVKNECPLCKQSFKSIIHNVRSYEDYD 114
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1435.2555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4W8_9PHAE5.370e-16494.31RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G117_ECTSI6.390e-10780.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI001C7133125.140e-1027.80E3 ubiquitin-protein ligase Topors-like n=2 Tax=Pe... [more]
A0A6G0XD46_9STRA1.510e-926.42RING-type domain-containing protein n=1 Tax=Aphano... [more]
A0A3R7MLJ3_PENVA2.490e-949.12RING-type domain-containing protein n=3 Tax=Penaeu... [more]
UPI000FD6484A2.690e-942.11E3 ubiquitin-protein ligase Topors-like n=1 Tax=Co... [more]
UPI000F691E022.730e-949.12uncharacterized protein LOC113822888 n=1 Tax=Penae... [more]
UPI0013CE46819.010e-942.11E3 ubiquitin-protein ligase Topors-like n=2 Tax=Pi... [more]
A0A8C3QP55_9PASS1.600e-840.35RING-type domain-containing protein n=1 Tax=Cyanod... [more]
V4BH35_LOTGI1.710e-843.10RING-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1435contigE-siliculosus-1a_F_contig1435:11257..15086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size678
Model size1399
Exons6
Hectar predicted targeting categoryother localisation
BRITEko00000,ko01000,ko03036,ko04121
Best eggNOG OGNA|NA|NA
Best tax levelMetazoa
COG Functional cat.O
EC2.3.2.27
EggNOG OGs39EGB@33154,3BEQ4@33208,KOG4430@1,KOG4430@2759
EggNOG free text desc.DNA topoisomerase binding
GOsGO:0000003,GO:0000151,GO:0000209,GO:0000226,GO:0000280,GO:0000922,GO:0000930,GO:0001654,GO:0001754,GO:0003407,GO:0003674,GO:0003676,GO:0003677,GO:0003823,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005521,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005652,GO:0005654,GO:0005694,GO:0005700,GO:0005737,GO:0005814,GO:0005815,GO:0005819,GO:0005856,GO:0005929,GO:0006139,GO:0006323,GO:0006351,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006513,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0006997,GO:0006998,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007060,GO:0007098,GO:0007140,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0008152,GO:0008219,GO:0008270,GO:0008630,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009653,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010032,GO:0010256,GO:0010467,GO:0010468,GO:0010498,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010842,GO:0010941,GO:0012501,GO:0015630,GO:0016043,GO:0016070,GO:0016567,GO:0016604,GO:0016605,GO:0016607,GO:0016740,GO:0016925,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019787,GO:0019789,GO:0019899,GO:0019941,GO:0019953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0023052,GO:0030154,GO:0030163,GO:0030182,GO:0030261,GO:0030496,GO:0031023,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031396,GO:0031398,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032391,GO:0032446,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032774,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034399,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035845,GO:0035869,GO:0036064,GO:0036211,GO:0042127,GO:0042461,GO:0042462,GO:0042670,GO:0042771,GO:0042981,GO:0042995,GO:0043005,GO:0043010,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044451,GO:0044463,GO:0044464,GO:0044547,GO:0044703,GO:0045132,GO:0045185,GO:0045893,GO:0045935,GO:0046483,GO:0046530,GO:0046548,GO:0046549,GO:0046872,GO:0046914,GO:0048232,GO:0048285,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048592,GO:0048593,GO:0048609,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051179,GO:0051235,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051299,GO:0051321,GO:0051338,GO:0051347,GO:0051438,GO:0051443,GO:0051457,GO:0051603,GO:0051641,GO:0051651,GO:0051704,GO:0051716,GO:0060041,GO:0060042,GO:0060219,GO:0060255,GO:0060548,GO:0061024,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070192,GO:0070647,GO:0070727,GO:0070936,GO:0071103,GO:0071704,GO:0071763,GO:0071840,GO:0072331,GO:0072332,GO:0072595,GO:0080090,GO:0090304,GO:0090596,GO:0097159,GO:0097190,GO:0097193,GO:0097458,GO:0097659,GO:0097730,GO:0097731,GO:0097733,GO:0098813,GO:0120025,GO:0120038,GO:0140013,GO:0140096,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1902494,GO:1902680,GO:1903046,GO:1903320,GO:1903322,GO:1903506,GO:1903508,GO:1990234,GO:2000112,GO:2001141
KEGG koko:K10631
Preferred nameTOPORS
Seed eggNOG ortholog400682.PAC_15714057
Seed ortholog evalue1.1e-07
Seed ortholog score63.9
Taxonomic scopeMetazoa
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1435.2555.1prot_E-siliculosus-1a_F_contig1435.2555.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1435 11569..14209 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.6152742-UTR-E-siliculosus-1a_F_contig1435:11256..114441622927948.6152742-UTR-E-siliculosus-1a_F_contig1435:11256..11444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 11257..11444 +
1696318749.3902478-UTR-E-siliculosus-1a_F_contig1435:11256..114441696318749.3902478-UTR-E-siliculosus-1a_F_contig1435:11256..11444Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 11257..11444 +
1622927948.625795-UTR-E-siliculosus-1a_F_contig1435:11472..115681622927948.625795-UTR-E-siliculosus-1a_F_contig1435:11472..11568Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 11473..11568 +
1696318749.405304-UTR-E-siliculosus-1a_F_contig1435:11472..115681696318749.405304-UTR-E-siliculosus-1a_F_contig1435:11472..11568Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 11473..11568 +
1622927948.6827185-UTR-E-siliculosus-1a_F_contig1435:14209..143941622927948.6827185-UTR-E-siliculosus-1a_F_contig1435:14209..14394Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 14210..14394 +
1696318749.451822-UTR-E-siliculosus-1a_F_contig1435:14209..143941696318749.451822-UTR-E-siliculosus-1a_F_contig1435:14209..14394Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 14210..14394 +
1622927948.6927266-UTR-E-siliculosus-1a_F_contig1435:14834..150861622927948.6927266-UTR-E-siliculosus-1a_F_contig1435:14834..15086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 14835..15086 +
1696318749.4602923-UTR-E-siliculosus-1a_F_contig1435:14834..150861696318749.4602923-UTR-E-siliculosus-1a_F_contig1435:14834..15086Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig1435 14835..15086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927948.6361642-CDS-E-siliculosus-1a_F_contig1435:11568..116161622927948.6361642-CDS-E-siliculosus-1a_F_contig1435:11568..11616Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 11569..11616 +
1696318749.414446-CDS-E-siliculosus-1a_F_contig1435:11568..116161696318749.414446-CDS-E-siliculosus-1a_F_contig1435:11568..11616Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 11569..11616 +
1622927948.6467657-CDS-E-siliculosus-1a_F_contig1435:12542..128651622927948.6467657-CDS-E-siliculosus-1a_F_contig1435:12542..12865Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 12543..12865 +
1696318749.4239142-CDS-E-siliculosus-1a_F_contig1435:12542..128651696318749.4239142-CDS-E-siliculosus-1a_F_contig1435:12542..12865Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 12543..12865 +
1622927948.6568043-CDS-E-siliculosus-1a_F_contig1435:13200..133781622927948.6568043-CDS-E-siliculosus-1a_F_contig1435:13200..13378Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 13201..13378 +
1696318749.4332485-CDS-E-siliculosus-1a_F_contig1435:13200..133781696318749.4332485-CDS-E-siliculosus-1a_F_contig1435:13200..13378Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 13201..13378 +
1622927948.6719446-CDS-E-siliculosus-1a_F_contig1435:14080..142091622927948.6719446-CDS-E-siliculosus-1a_F_contig1435:14080..14209Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 14081..14209 +
1696318749.4441276-CDS-E-siliculosus-1a_F_contig1435:14080..142091696318749.4441276-CDS-E-siliculosus-1a_F_contig1435:14080..14209Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1435 14081..14209 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1435.2555.1

>prot_E-siliculosus-1a_F_contig1435.2555.1 ID=prot_E-siliculosus-1a_F_contig1435.2555.1|Name=mRNA_E-siliculosus-1a_F_contig1435.2555.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=226bp
MIKSCRHLYCKVCLFEWLKASDRCPLCKVTVSRVLHEIKSPKDYEIHTHV
SVKKRGGGDAEGSLPSPPAAGGTAAETSGRGGGRDGGAGMSGGAAIVDGK
KGPEFRSLVYRRGLAAEPPEEKARRPKPLDQLRSWIARDVQAAAPGSRGE
GGMDTRLVEDIVRALLKDNDVDTQDGYCTVKEQLQGFLFENTAPFLHELW
CFRWSKARMPAYDREAVYRPRPRQG*
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mRNA from alignment at E-siliculosus-1a_F_contig1435:11257..15086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1435.2555.1 ID=mRNA_E-siliculosus-1a_F_contig1435.2555.1|Name=mRNA_E-siliculosus-1a_F_contig1435.2555.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3830bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1435:11257..15086+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
TGTGTGCCGAATGCATAGAACACCGGCAACGACCTTGTTGGAGAAATAAT
GGAGGAGTGGGAGGACGGGGGCGAGGAAGAGGATGAGTTTGCATATGTTC
ACTACGCTCAAACGGCGAAGAGGAGACGGCTACAGCAGCAGGTTGAAGAA
GGCGGCGGGGCTGCCGCGGCGGGCGACGCGCCGCAGCCGCACCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGGACAGCAGTTGCA
GTACCGACGCCTTTCGCGGCCACCACTGCCCTATATGCTTGGGTCTTGTC
GAGGATTCGGCGATGATCAAGTCCTGCCGGCACTTGTATTGCAAAGTGTG
CTTGTTTGAGGTAAGGTCGTGGAATCCACAGCAGCAAGTTTGAGGTCGTG
TGTGTGCTATTGGTTCGCTGAATTCATAGGGGTACCGACGCAAACGGAAG
AGATGTTCGCATGGGAAAATATGAAACTATCTGGTACGCGGTGTCGTTCA
GGTCGGGTGGAGCACTTTGCAAGCGCCCTAATTGAGCGTGTGACTCCATG
CGTATATACGATCATGCAGCGAGCGTACAGTACTGGGTAAAATCCGAAAA
ATGGAGGTAAAAGACATCCGTGGCACCTCCCAGCAGAGGGGTTGAGCAGC
AGCACAGACACAGAGCAGCTTTCAACGACGGGCTGTGCTCAGCGGAAGCC
ACATCGTTATTAGGCCCGATTTCGACCCACGCATGTGTGCTACAGAGAAA
CATGCCTTGAGACAAGCATGGGATATGTAGAAACCTTCGAGGCTCGACCA
AGTACAACTCACGCCAAAACGCAGCTTGACACTGAGCGAAGGGTCTTTCT
ACAACTGACCTCAGGAGGTGATGCCACTGGTGCTGTATCATCCTTTCACT
ACAGCAGTACATTTATCCGAGGAGAAGATTTGTCTCAAACATCATTGTTG
CACCCAACATGAGGTGGGAAAGACGCAAATCATCCCCTTGTGCCATACGC
AGCGCACGAACTGGGGATATTTCTGGTAGAGTCGTACGAACGCGTACCCT
GCCGAAAACGCAATCACCTACTGTAACGACATACATACGTCGCCCACTAA
ATGCCCGCACAACAAAGGAACTAACGAACGAACGCTCGGGGTCGCCGTAC
CTCCACCATTTTGTCCGGCATCACAAAGTGGCTCATTCCCCTTCTCCCCC
TCCGCCCGTTCCGCATGCACTTCCTTCCCCCTTCGCAACCACAAACGCCT
GCCGCCTATATTGGTACCTGCATGCAACCTATGTAGTGGCTCAAGGCCTC
CGATCGGTGCCCTCTATGCAAGGTCACCGTATCACGAGTACTCCACGAGA
TCAAGTCTCCCAAGGACTACGAGATTCACACGCATGTCTCTGTCAAGAAA
CGCGGCGGGGGGGACGCGGAGGGGTCTTTGCCGTCGCCTCCTGCAGCGGG
CGGCACCGCGGCCGAGACATCTGGGCGCGGCGGGGGGAGAGACGGGGGCG
CGGGAATGAGTGGGGGTGCCGCGATTGTTGACGGCAAGAAGGGACCCGAG
TTCCGGTCCCTGGTGTACAGAAGGGGCTTGGCGGCGGAGCCCCCCGAAGA
GAAAGCGAGGTACGTCTCGTGACCTCACGACCAAATTGCTATCATACGAT
GCTGTGATGGGATCCATCCGCTGGTCTACCACAAGTCTCGTCTGTTCGAG
ACCCAAAAAGTTGTCATCTTGAACGAACGAGATCAACAGGGGCTGGGCAC
ATGGTATCTACATGTTGTAGCTGGGCGAGCTCGCTGTATGATGTGAACCA
AGAAACGTTGCGTATTTTTTCGGCGACTTTGAACCTGCCCCAAATAGTAG
TGTCAACTCCAGAACCTTCTGGGTCATCCGATGCCTGGAGGGTGCAAAGG
CGGTAAGACCACAATGCCGCCTACGTCTTCCACTCGCTTTACAGGCGGCC
AAAGCCGCTGGACCAGCTTCGATCTTGGATCGCCAGGGACGTTCAAGCGG
CGGCTCCGGGCAGCAGGGGCGAGGGGGGGATGGACACTCGGTTGGTGGAG
GATATCGTGCGGGCGCTTCTGAAGGACAACGATGTTGACACACAAGACGG
CTACTGCACCGTCAAGGAGCAGGTTGGCGAAGTTGTATTCATCTTCGGTG
TCAATTTTTGTCGAGGCGATTGAGGAACGGGTCCGCATTGTGTTGGAACT
CCCCCACCACCGCCGCCGCGGCCGCCTGGCACAGCAGGCAGTCTCTTGTG
TTCTGAACCGCCTCCTCTCGTGCGTGCACGTGTCGGTTGGGTTTGGGACA
GCAGGTGCAGCCATGTCTTTCTCTTTAAACCCCATCCTTTTGAGTCTCCT
TCTAGTTCACGCTTGCCTGGTGCTACGCGCAAACTATGTTACGCATTATG
CGGGATGACCTCTGTAGCGAATGCGTTAAAATGAACGCTCTGTTGCTTCC
GACAACGCGGCCTATCATGCCGAAGGAACTTACCGCACGTTACCAATTTT
TTCGGAGAGCTCTTTCTTCGACGGTGGTATGATTCATGTGGGATTTGCTT
TTCTGTGAGATGTTGCGGGCGGTCCTTCGCGCTCTGTGTCACTGCTGGCC
TTGGTGCCGCTCAGTAGCACACGATGAATATACGCGTGGGCGCTAGGTGC
ACATCCTGCGCCCAACCACCCCCCTCCAGATGTCATTTTTTGCCGCCCCT
TCTTTCGCGCCTAGTCATACGAAGTACTGGTTGATTTCGCGCGCCCACCC
CGCCAACCTGTTGCCCTCCGTCGACTGTTCGGGTGTTGCCGTTATTTATT
TTTTTTGTTTTTGCTGTCCTGAAGTTGCAGGGCTTCTTGTTCGAGAACAC
CGCGCCCTTTCTGCACGAGTTGTGGTGCTTCAGGTGGAGCAAGGCCCGCA
TGCCCGCCTACGATCGTGAAGCGGTGTACAGACCGAGACCGAGACAGGGA
TGACGACTGACCTAACGTGGCATCGTTGCTTTGTACGTCGAGCCAAGCGC
AACTGGTATTATACATCTAGGGTTGGGACCAAGAGAGAAAAACTGGCTCT
TCACGGGGAAGAGGAGAGCGCTTTCACCGACCAAGATTCAGCAGTCAGGT
CTCCAAGCGAAGCCCGTCAAGGCCTTGGTGCAAGAAAGGTACGCCGAACA
CAGTAGTGTATAGCTTTTCCTCGTCCTACGGCAGCGAATGGTATGCGACA
TATATTACGTGTGGATGAACGTAGGTGAGCGAGCGTAGGTCCTGTCGCGA
TGATGATGGTCGAGGGGGGTCTCACGTTAGATTAGCGAGCTGTTGCTTCG
GGAACCATATGTCACCAAACGGTACCGGAATATGGACATCTCTGTATCTA
TAAACTTTGTTCTGTAGGGGTACGACCCTCGCGGGCCACTCTAGGAGAAG
GTGTCTCTCTCTACTACTGCTGTACCTCTCTCGGGTCGGCTTACGTATAA
ATATGTTTTTTCCAAGCCCGAGGACTCGCTTGTTGAGTTTTTTGTTTACA
TCCAAGATCACAAACCGGAGTTGCGGACATGCACACGACTTTTTCGCTCC
CGACCGCCGCCGCTGTGCTAACCCGCAGGTTTGAGATTTGTGGAAAACAG
TTCGCCGGAGGACGAAGTAAAACCCCTCATTTGGGGATTCGAGGGGGTCG
ACCCTCCGTGGAACACTGCGCACTCTTGTGCTCCGTTTTCTTCGGCCTCT
TGCGTACCGCAACCTGGGTGGTCTCAGAATCACGGGAATGTCTTGGATGA
AATTGAGCAGCGTTTTCGTTTTTTCCGATACGAGCGATGAAAGGAACAAA
ATGATTATCTTCTCTGGTCCTTGGTAGGCA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1435:11257..15086+

>mRNA_E-siliculosus-1a_F_contig1435.2555.1 ID=mRNA_E-siliculosus-1a_F_contig1435.2555.1|Name=mRNA_E-siliculosus-1a_F_contig1435.2555.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1435:11257..15086+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGATCAAGTCCTGCCGGCACTTGTATTGCAAAGTGTGCTTGTTTGAGAT
GATCAAGTCCTGCCGGCACTTGTATTGCAAAGTGTGCTTGTTTGAGTGGC
TCAAGGCCTCCGATCGGTGCCCTCTATGCAAGGTCACCGTATCACGAGTA
CTCCACGAGATCAAGTCTCCCAAGGACTACGAGATTCACACGCATGTCTC
TGTCAAGAAACGCGGCGGGGGGGACGCGGAGGGGTCTTTGCCGTCGCCTC
CTGCAGCGGGCGGCACCGCGGCCGAGACATCTGGGCGCGGCGGGGGGAGA
GACGGGGGCGCGGGAATGAGTGGGGGTGCCGCGATTGTTGACGGCAAGAA
GGGACCCGAGTTCCGGTCCCTGGTGTACAGAAGGGGCTTGGCGGCGGAGC
CCCCCGAAGAGAAAGCGAGTGGCTCAAGGCCTCCGATCGGTGCCCTCTAT
GCAAGGTCACCGTATCACGAGTACTCCACGAGATCAAGTCTCCCAAGGAC
TACGAGATTCACACGCATGTCTCTGTCAAGAAACGCGGCGGGGGGGACGC
GGAGGGGTCTTTGCCGTCGCCTCCTGCAGCGGGCGGCACCGCGGCCGAGA
CATCTGGGCGCGGCGGGGGGAGAGACGGGGGCGCGGGAATGAGTGGGGGT
GCCGCGATTGTTGACGGCAAGAAGGGACCCGAGTTCCGGTCCCTGGTGTA
CAGAAGGGGCTTGGCGGCGGAGCCCCCCGAAGAGAAAGCGAGGCGGCCAA
AGCCGCTGGACCAGCTTCGATCTTGGATCGCCAGGGACGTTCAAGCGGCG
GCTCCGGGCAGCAGGGGCGAGGGGGGGATGGACACTCGGTTGGTGGAGGA
TATCGTGCGGGCGCTTCTGAAGGACAACGATGTTGACACACAAGACGGCT
ACTGCACCGTCAAGGAGCAGGCGGCCAAAGCCGCTGGACCAGCTTCGATC
TTGGATCGCCAGGGACGTTCAAGCGGCGGCTCCGGGCAGCAGGGGCGAGG
GGGGGATGGACACTCGGTTGGTGGAGGATATCGTGCGGGCGCTTCTGAAG
GACAACGATGTTGACACACAAGACGGCTACTGCACCGTCAAGGAGCAGTT
GCAGGGCTTCTTGTTCGAGAACACCGCGCCCTTTCTGCACGAGTTGTGGT
GCTTCAGGTGGAGCAAGGCCCGCATGCCCGCCTACGATCGTGAAGCGGTG
TACAGACCGAGACCGAGACAGGGATGATTGCAGGGCTTCTTGTTCGAGAA
CACCGCGCCCTTTCTGCACGAGTTGTGGTGCTTCAGGTGGAGCAAGGCCC
GCATGCCCGCCTACGATCGTGAAGCGGTGTACAGACCGAGACCGAGACAG
GGATGA
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