Homology
BLAST of mRNA_E-siliculosus-1a_F_contig103.246.1 vs. uniprot
Match: D7FUG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUG7_ECTSI) HSP 1 Score: 174 bits (440), Expect = 6.940e-53 Identity = 89/129 (68.99%), Postives = 95/129 (73.64%), Query Frame = 1 Query: 1 MGLSPDIRDMQWNGESALSMREARDRAHRIEAALQEPDLAAYMASLRTAGVPNHRSSNXXXXXXXXXXXXXXXXXXXXXXXXSNKRGFGKRKRRHRERPVCTWPKCNKPVGHLIGRCYQRIKSQRKVKR 387
MGLSPDIRDMQWNGE+ALSMREARDRA EAAL EPDLAA MAS R A VPNHRSSN SN+RGFGKRKRR RERPVCTWPKC+KPVGHLIGRCY+RIKSQRK ++
Sbjct: 1 MGLSPDIRDMQWNGEAALSMREARDRAQLTEAALTEPDLAACMASRRAADVPNHRSSNDDDAAVTRGTPSSFSNEESFSSSASNERGFGKRKRRQRERPVCTWPKCSKPVGHLIGRCYRRIKSQRKAQK 129
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 468 |
| Model size | 472 |
| Exons | 1 |
| Ec32 ortholog | Ec-03_000230.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927532.7786143-UTR-E-siliculosus-1a_F_contig103:3543..3547 | 1622927532.7786143-UTR-E-siliculosus-1a_F_contig103:3543..3547 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig103 3544..3547 - |
| 1696318571.7150402-UTR-E-siliculosus-1a_F_contig103:3543..3547 | 1696318571.7150402-UTR-E-siliculosus-1a_F_contig103:3543..3547 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig103 3544..3547 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927532.7992444-CDS-E-siliculosus-1a_F_contig103:3547..4015 | 1622927532.7992444-CDS-E-siliculosus-1a_F_contig103:3547..4015 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig103 3548..4015 - |
| 1696318571.7229335-CDS-E-siliculosus-1a_F_contig103:3547..4015 | 1696318571.7229335-CDS-E-siliculosus-1a_F_contig103:3547..4015 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | CDS | E-siliculosus-1a_F_contig103 3548..4015 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig103.246.1 >prot_E-siliculosus-1a_F_contig103.246.1 ID=prot_E-siliculosus-1a_F_contig103.246.1|Name=mRNA_E-siliculosus-1a_F_contig103.246.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=156bp
MGLSPDIRDMQWNGESALSMREARDRAHRIEAALQEPDLAAYMASLRTAG
VPNHRSSNDDDAAVTRGTPSSSSNEESLSSSASNKRGFGKRKRRHRERPV
CTWPKCNKPVGHLIGRCYQRIKSQRKVKRSGGLTARRSEPSLQDHRAPPG
HSGRV* back to topmRNA from alignment at E-siliculosus-1a_F_contig103:3544..4015- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig103.246.1 ID=mRNA_E-siliculosus-1a_F_contig103.246.1|Name=mRNA_E-siliculosus-1a_F_contig103.246.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=472bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig103:3544..4015- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCCTGTCGCCAGATATTCGGGATATGCAGTGGAATGGAGAGTCTGC
CCTCAGCATGAGAGAAGCAAGAGACCGTGCCCATCGAATTGAAGCAGCCT
TACAGGAGCCGGACCTTGCAGCTTACATGGCCAGCCTAAGGACAGCTGGC
GTGCCGAACCACCGCAGCAGCAATGACGACGATGCTGCTGTCACCCGCGG
TACGCCTTCGTCATCTTCCAACGAGGAGAGCCTCTCCTCGTCTGCTTCGA
ACAAACGTGGCTTCGGCAAGCGGAAGAGGCGGCATCGGGAGCGACCGGTG
TGCACGTGGCCCAAGTGCAACAAACCAGTCGGCCACCTCATCGGTCGGTG
CTATCAAAGAATCAAGTCACAGCGAAAAGTCAAGAGGAGCGGCGGGCTCA
CCGCAAGGAGAAGCGAGCCAAGCCTCCAGGACCACCGCGCGCCGCCCGGC
CACTCCGGACGGGTATGACGAC back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig103:3544..4015- >mRNA_E-siliculosus-1a_F_contig103.246.1 ID=mRNA_E-siliculosus-1a_F_contig103.246.1|Name=mRNA_E-siliculosus-1a_F_contig103.246.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig103:3544..4015- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCCTGTCGCCAGATATTCGGGATATGCAGTGGAATGGAGAGTCTGC
CCTCAGCATGAGAGAAGCAAGAGACCGTGCCCATCGAATTGAAGCAGCCT
TACAGGAGCCGGACCTTGCAGCTTACATGGCCAGCCTAAGGACAGCTGGC
GTGCCGAACCACCGCAGCAGCAATGACGACGATGCTGCTGTCACCCGCGG
TACGCCTTCGTCATCTTCCAACGAGGAGAGCCTCTCCTCGTCTGCTTCGA
ACAAACGTGGCTTCGGCAAGCGGAAGAGGCGGCATCGGGAGCGACCGGTG
TGCACGTGGCCCAAGTGCAACAAACCAGTCGGCCACCTCATCGGTCGGTG
CTATCAAAGAATCAAGTCACAGCGAAAAGTCAAGAGGAGCGGCGGGCTCA
CCGCAAGGAGAAGCGAGCCAAGCCTCCAGGACCACCGCGCGCCGCCCGGC
CACTCCGGACGGGTATGAATGGGCCTGTCGCCAGATATTCGGGATATGCA
GTGGAATGGAGAGTCTGCCCTCAGCATGAGAGAAGCAAGAGACCGTGCCC
ATCGAATTGAAGCAGCCTTACAGGAGCCGGACCTTGCAGCTTACATGGCC
AGCCTAAGGACAGCTGGCGTGCCGAACCACCGCAGCAGCAATGACGACGA
TGCTGCTGTCACCCGCGGTACGCCTTCGTCATCTTCCAACGAGGAGAGCC
TCTCCTCGTCTGCTTCGAACAAACGTGGCTTCGGCAAGCGGAAGAGGCGG
CATCGGGAGCGACCGGTGTGCACGTGGCCCAAGTGCAACAAACCAGTCGG
CCACCTCATCGGTCGGTGCTATCAAAGAATCAAGTCACAGCGAAAAGTCA
AGAGGAGCGGCGGGCTCACCGCAAGGAGAAGCGAGCCAAGCCTCCAGGAC
CACCGCGCGCCGCCCGGCCACTCCGGACGGGTATGA back to top
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