mRNA_E-siliculosus-1a_F_contig103.246.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig103.246.1
Unique NamemRNA_E-siliculosus-1a_F_contig103.246.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig103.246.1 vs. uniprot
Match: D7FUG7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUG7_ECTSI)

HSP 1 Score: 174 bits (440), Expect = 6.940e-53
Identity = 89/129 (68.99%), Postives = 95/129 (73.64%), Query Frame = 1 
Query:    1 MGLSPDIRDMQWNGESALSMREARDRAHRIEAALQEPDLAAYMASLRTAGVPNHRSSNXXXXXXXXXXXXXXXXXXXXXXXXSNKRGFGKRKRRHRERPVCTWPKCNKPVGHLIGRCYQRIKSQRKVKR 387
            MGLSPDIRDMQWNGE+ALSMREARDRA   EAAL EPDLAA MAS R A VPNHRSSN                        SN+RGFGKRKRR RERPVCTWPKC+KPVGHLIGRCY+RIKSQRK ++
Sbjct:    1 MGLSPDIRDMQWNGEAALSMREARDRAQLTEAALTEPDLAACMASRRAADVPNHRSSNDDDAAVTRGTPSSFSNEESFSSSASNERGFGKRKRRQRERPVCTWPKCSKPVGHLIGRCYRRIKSQRKAQK 129
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig103.246.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUG7_ECTSI6.940e-5368.99Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig103contigE-siliculosus-1a_F_contig103:3544..4015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size468
Model size472
Exons1
Ec32 orthologEc-03_000230.1
Ec32 ortholog descriptionexpressed unknown protein
Hectar predicted targeting categoryother localisation
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927532.7786143-UTR-E-siliculosus-1a_F_contig103:3543..35471622927532.7786143-UTR-E-siliculosus-1a_F_contig103:3543..3547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig103 3544..3547 -
1696318571.7150402-UTR-E-siliculosus-1a_F_contig103:3543..35471696318571.7150402-UTR-E-siliculosus-1a_F_contig103:3543..3547Ectocarpus siliculosus Ec863f_EcPH12_90f femaleUTRE-siliculosus-1a_F_contig103 3544..3547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927532.7992444-CDS-E-siliculosus-1a_F_contig103:3547..40151622927532.7992444-CDS-E-siliculosus-1a_F_contig103:3547..4015Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig103 3548..4015 -
1696318571.7229335-CDS-E-siliculosus-1a_F_contig103:3547..40151696318571.7229335-CDS-E-siliculosus-1a_F_contig103:3547..4015Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig103 3548..4015 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig103.246.1prot_E-siliculosus-1a_F_contig103.246.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig103 3548..4015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig103.246.1

>prot_E-siliculosus-1a_F_contig103.246.1 ID=prot_E-siliculosus-1a_F_contig103.246.1|Name=mRNA_E-siliculosus-1a_F_contig103.246.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=156bp
MGLSPDIRDMQWNGESALSMREARDRAHRIEAALQEPDLAAYMASLRTAG
VPNHRSSNDDDAAVTRGTPSSSSNEESLSSSASNKRGFGKRKRRHRERPV
CTWPKCNKPVGHLIGRCYQRIKSQRKVKRSGGLTARRSEPSLQDHRAPPG
HSGRV*
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mRNA from alignment at E-siliculosus-1a_F_contig103:3544..4015-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig103.246.1 ID=mRNA_E-siliculosus-1a_F_contig103.246.1|Name=mRNA_E-siliculosus-1a_F_contig103.246.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=472bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig103:3544..4015- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCCTGTCGCCAGATATTCGGGATATGCAGTGGAATGGAGAGTCTGC
CCTCAGCATGAGAGAAGCAAGAGACCGTGCCCATCGAATTGAAGCAGCCT
TACAGGAGCCGGACCTTGCAGCTTACATGGCCAGCCTAAGGACAGCTGGC
GTGCCGAACCACCGCAGCAGCAATGACGACGATGCTGCTGTCACCCGCGG
TACGCCTTCGTCATCTTCCAACGAGGAGAGCCTCTCCTCGTCTGCTTCGA
ACAAACGTGGCTTCGGCAAGCGGAAGAGGCGGCATCGGGAGCGACCGGTG
TGCACGTGGCCCAAGTGCAACAAACCAGTCGGCCACCTCATCGGTCGGTG
CTATCAAAGAATCAAGTCACAGCGAAAAGTCAAGAGGAGCGGCGGGCTCA
CCGCAAGGAGAAGCGAGCCAAGCCTCCAGGACCACCGCGCGCCGCCCGGC
CACTCCGGACGGGTATGACGAC
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig103:3544..4015-

>mRNA_E-siliculosus-1a_F_contig103.246.1 ID=mRNA_E-siliculosus-1a_F_contig103.246.1|Name=mRNA_E-siliculosus-1a_F_contig103.246.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=936bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig103:3544..4015- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGGCCTGTCGCCAGATATTCGGGATATGCAGTGGAATGGAGAGTCTGC
CCTCAGCATGAGAGAAGCAAGAGACCGTGCCCATCGAATTGAAGCAGCCT
TACAGGAGCCGGACCTTGCAGCTTACATGGCCAGCCTAAGGACAGCTGGC
GTGCCGAACCACCGCAGCAGCAATGACGACGATGCTGCTGTCACCCGCGG
TACGCCTTCGTCATCTTCCAACGAGGAGAGCCTCTCCTCGTCTGCTTCGA
ACAAACGTGGCTTCGGCAAGCGGAAGAGGCGGCATCGGGAGCGACCGGTG
TGCACGTGGCCCAAGTGCAACAAACCAGTCGGCCACCTCATCGGTCGGTG
CTATCAAAGAATCAAGTCACAGCGAAAAGTCAAGAGGAGCGGCGGGCTCA
CCGCAAGGAGAAGCGAGCCAAGCCTCCAGGACCACCGCGCGCCGCCCGGC
CACTCCGGACGGGTATGAATGGGCCTGTCGCCAGATATTCGGGATATGCA
GTGGAATGGAGAGTCTGCCCTCAGCATGAGAGAAGCAAGAGACCGTGCCC
ATCGAATTGAAGCAGCCTTACAGGAGCCGGACCTTGCAGCTTACATGGCC
AGCCTAAGGACAGCTGGCGTGCCGAACCACCGCAGCAGCAATGACGACGA
TGCTGCTGTCACCCGCGGTACGCCTTCGTCATCTTCCAACGAGGAGAGCC
TCTCCTCGTCTGCTTCGAACAAACGTGGCTTCGGCAAGCGGAAGAGGCGG
CATCGGGAGCGACCGGTGTGCACGTGGCCCAAGTGCAACAAACCAGTCGG
CCACCTCATCGGTCGGTGCTATCAAAGAATCAAGTCACAGCGAAAAGTCA
AGAGGAGCGGCGGGCTCACCGCAAGGAGAAGCGAGCCAAGCCTCCAGGAC
CACCGCGCGCCGCCCGGCCACTCCGGACGGGTATGA
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