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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1029.245.1 vs. uniprot
Match: D7FLY0_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY0_ECTSI) HSP 1 Score: 290 bits (743), Expect = 2.890e-99 Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 1 Query: 1 MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTKTELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKPQYGREKLDKAFDEISGGLDEIDASFLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDFHHLQTCTTDNI 450
MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTK ELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKP+YGREKLD+AFDEISGGLDEIDA+FLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDFHHLQTCTTDNI
Sbjct: 1 MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTKAELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKPKYGREKLDRAFDEISGGLDEIDATFLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDFHHLQTCTTDNI 150
BLAST of mRNA_E-siliculosus-1a_F_contig1029.245.1 vs. uniprot
Match: A0A835YZ87_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ87_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 6.750e-14 Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 1 Query: 118 VPTKTELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKPQYGREKLDKAFDEISGGLDE-------IDASFLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDF 417
+PT EL + + MD DKTG +DF SFF+ +A +KP Y + L+ AF I G + + L M LGQ + DC+ ++ E+DR G G +S+ DF
Sbjct: 3 IPTAQELEDMKAGMDPDKTGHIDFPSFFSVLAISLKPVYSEKMLNSAFAHIVGVPESAISDDTVLSRGQLRACMHRLGQVRLSLDDCDDIVREMDRTGRGAVSRADF 109
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 453 |
| Model size | 453 |
| Exons | 3 |
| Ec32 ortholog | Ec-22_000140.1 |
| Ec32 ortholog description | EF-hand domain pair |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1029.245.1 >prot_E-siliculosus-1a_F_contig1029.245.1 ID=prot_E-siliculosus-1a_F_contig1029.245.1|Name=mRNA_E-siliculosus-1a_F_contig1029.245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=151bp
MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTKTELSSLT
SKMDSDKTGKVDFGSFFAAMAAFMKPQYGREKLDKAFDEISGGLDEIDAS
FLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDFHHLQTCTTDNI
* back to topmRNA from alignment at E-siliculosus-1a_F_contig1029:36549..38040+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1029.245.1 ID=mRNA_E-siliculosus-1a_F_contig1029.245.1|Name=mRNA_E-siliculosus-1a_F_contig1029.245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1492bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1029:36549..38040+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCAACAAAGGTGCTCGCATCAACAACAGGCTCAAGAATGCCGCCCG
TGCCGTCTCCTCCGCGTTAAACAAAGACAGCCGCGAAGCCGGCGCTGACG
GAGATGACGATTCCAAAGTAAGTCGAGGCGTCGAGGCCCGTCGACTGCTA
CGTGCTACGACCGACCGCGCTGTCGCTCAAAAACTTGACGACGTACAATT
CAGTTCGCTCTATCGTAGATCAAGCATAGGCCTTGCGTTCACGCGTTGCC
CACATGACGGTAACCCATCGACTACACATAATGCGGCGTGTGACGTTCGA
CAATAATTAATGCTCGGCCGTTCTCCTCGTTTCCTACCGGACCGCGGTAT
CTACGTGTTGGATGCGGTGCCACGACCGTGCGGGCGAGAAGAGCCCTCAA
CTTCTTTTCAGCGACCTAGAGGTGGATCGACTCAAGATCGCGTTCGACAT
GCATGCAGACGAAGACGAGCACGTGGTCTACGTCGAAGACTTGAAGGACC
TCCTGGAGACGCTCTTTATTGTAGGTGATCGACTACAGCAGTGCAGTACA
TGTACGTCGCACGTCCCTCTACGCTTATCCACAACATTCGAGGGCGACTC
TCACCCACAACGTATGCATGCAGAGTCTTAACATGTTGGAGACGACGAGC
CTTATGCTACATAGGCGATACCTATTGTGTTCCGGAGAGTTGTTGGTGTT
GTCGTCATCGCCGAAGTTGTGGGTAGATGCCGTTGATTCCATCACCGTGT
GGTGGCATTGATGATCGTCCCTCGCGATGTGTCCGTAATGTTTGGTATCC
CGATTCTTCGGGCTCTTATTGACAAAGGTGCCCACCAAGACAGAACTGAG
CTCATTAACTTCAAAGATGGACTCAGACAAGACGGGCAAGGTAGACTTTG
GCTCGTTCTTCGCTGCCATGGCCGCCTTCATGAAGCCGCAGTACGGACGA
GAGAAGCTCGACAAAGCTTTCGACGAAATATCGGGGTGAGCTTCGCAACA
GCAGCGAGGAGAGGGCACTGCTAAATGAATAGAAGAGGTCAGCCAGCGCG
ACCATGAACAACCAATAAACACGTGGTCTACATACACTTGCCCTTTCTAT
CACTGCAGTGTCTTGCTCTACGGCGTTGCTGCCGATTTTCATCGTTCCTC
AGCACGTCACTACTACTACTGCGCCGTCTGCTACCATTACTTGCAGTCTA
CGGGTTTCGCGCCGCCAACCGCAAATTTCCGTCTTTTAACAAAAAACGAC
TTTCAGGAAACTGCGGGCAACTTTTCTCTCATGCCATGTTCCTCTGACAT
TAATTAACATTCAGGGGGTTGGATGAGATCGATGCCAGCTTTCTCCATCG
GACCATGGTTCACCTGGGCCAGTCGACCATCCGCTACGCCGATTGCGAGG
CTATGATCTGCGAAGTGGATCGGAATGGCCACGGGCGTATTTCGAAACGT
GACTTTCATCATCTGCAAACGTGCACCACCGACAACATCTAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1029:36549..38040+ >mRNA_E-siliculosus-1a_F_contig1029.245.1 ID=mRNA_E-siliculosus-1a_F_contig1029.245.1|Name=mRNA_E-siliculosus-1a_F_contig1029.245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1029:36549..38040+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCAACAAAGGTGCTCGCATCAACAACAGGCTCAAGAATGCCGCCCG
TGCCGTCTCCTCCGCGTTAAACAAAGACAGCCGCGAAGCCGGCGCTGACG
GAGATGACGATTCCAAAATGCTCAACAAAGGTGCTCGCATCAACAACAGG
CTCAAGAATGCCGCCCGTGCCGTCTCCTCCGCGTTAAACAAAGACAGCCG
CGAAGCCGGCGCTGACGGAGATGACGATTCCAAAGTGCCCACCAAGACAG
AACTGAGCTCATTAACTTCAAAGATGGACTCAGACAAGACGGGCAAGGTA
GACTTTGGCTCGTTCTTCGCTGCCATGGCCGCCTTCATGAAGCCGCAGTA
CGGACGAGAGAAGCTCGACAAAGCTTTCGACGAAATATCGGGGTGCCCAC
CAAGACAGAACTGAGCTCATTAACTTCAAAGATGGACTCAGACAAGACGG
GCAAGGTAGACTTTGGCTCGTTCTTCGCTGCCATGGCCGCCTTCATGAAG
CCGCAGTACGGACGAGAGAAGCTCGACAAAGCTTTCGACGAAATATCGGG
GGGGTTGGATGAGATCGATGCCAGCTTTCTCCATCGGACCATGGTTCACC
TGGGCCAGTCGACCATCCGCTACGCCGATTGCGAGGCTATGATCTGCGAA
GTGGATCGGAATGGCCACGGGCGTATTTCGAAACGTGACTTTCATCATCT
GCAAACGTGCACCACCGACAACATCTAGGGGGTTGGATGAGATCGATGCC
AGCTTTCTCCATCGGACCATGGTTCACCTGGGCCAGTCGACCATCCGCTA
CGCCGATTGCGAGGCTATGATCTGCGAAGTGGATCGGAATGGCCACGGGC
GTATTTCGAAACGTGACTTTCATCATCTGCAAACGTGCACCACCGACAAC
ATCTAG back to top
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