mRNA_E-siliculosus-1a_F_contig1029.245.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig1029.245.1
Unique NamemRNA_E-siliculosus-1a_F_contig1029.245.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1029.245.1 vs. uniprot
Match: D7FLY0_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLY0_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 2.890e-99
Identity = 146/150 (97.33%), Postives = 149/150 (99.33%), Query Frame = 1 
Query:    1 MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTKTELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKPQYGREKLDKAFDEISGGLDEIDASFLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDFHHLQTCTTDNI 450
            MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTK ELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKP+YGREKLD+AFDEISGGLDEIDA+FLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDFHHLQTCTTDNI
Sbjct:    1 MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTKAELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKPKYGREKLDRAFDEISGGLDEIDATFLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDFHHLQTCTTDNI 150
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BLAST of mRNA_E-siliculosus-1a_F_contig1029.245.1 vs. uniprot
Match: A0A835YZ87_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ87_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.750e-14
Identity = 39/107 (36.45%), Postives = 57/107 (53.27%), Query Frame = 1 
Query:  118 VPTKTELSSLTSKMDSDKTGKVDFGSFFAAMAAFMKPQYGREKLDKAFDEISGGLDE-------IDASFLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDF 417
            +PT  EL  + + MD DKTG +DF SFF+ +A  +KP Y  + L+ AF  I G  +        +    L   M  LGQ  +   DC+ ++ E+DR G G +S+ DF
Sbjct:    3 IPTAQELEDMKAGMDPDKTGHIDFPSFFSVLAISLKPVYSEKMLNSAFAHIVGVPESAISDDTVLSRGQLRACMHRLGQVRLSLDDCDDIVREMDRTGRGAVSRADF 109
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1029.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLY0_ECTSI2.890e-9997.33EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YZ87_9STRA6.750e-1436.45EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1029contigE-siliculosus-1a_F_contig1029:36549..38040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start1
Stop1
Cds size453
Model size453
Exons3
Ec32 orthologEc-22_000140.1
Ec32 ortholog descriptionEF-hand domain pair
Hectar predicted targeting categoryother localisation
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1029.245.1prot_E-siliculosus-1a_F_contig1029.245.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig1029 36549..38040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927532.7017236-CDS-E-siliculosus-1a_F_contig1029:36548..366651622927532.7017236-CDS-E-siliculosus-1a_F_contig1029:36548..36665Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1029 36549..36665 +
1696318571.6855276-CDS-E-siliculosus-1a_F_contig1029:36548..366651696318571.6855276-CDS-E-siliculosus-1a_F_contig1029:36548..36665Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1029 36549..36665 +
1622927532.7185957-CDS-E-siliculosus-1a_F_contig1029:37375..375331622927532.7185957-CDS-E-siliculosus-1a_F_contig1029:37375..37533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1029 37376..37533 +
1696318571.6931164-CDS-E-siliculosus-1a_F_contig1029:37375..375331696318571.6931164-CDS-E-siliculosus-1a_F_contig1029:37375..37533Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1029 37376..37533 +
1622927532.731804-CDS-E-siliculosus-1a_F_contig1029:37862..380401622927532.731804-CDS-E-siliculosus-1a_F_contig1029:37862..38040Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1029 37863..38040 +
1696318571.705089-CDS-E-siliculosus-1a_F_contig1029:37862..380401696318571.705089-CDS-E-siliculosus-1a_F_contig1029:37862..38040Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig1029 37863..38040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig1029.245.1

>prot_E-siliculosus-1a_F_contig1029.245.1 ID=prot_E-siliculosus-1a_F_contig1029.245.1|Name=mRNA_E-siliculosus-1a_F_contig1029.245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=151bp
MLNKGARINNRLKNAARAVSSALNKDSREAGADGDDDSKVPTKTELSSLT
SKMDSDKTGKVDFGSFFAAMAAFMKPQYGREKLDKAFDEISGGLDEIDAS
FLHRTMVHLGQSTIRYADCEAMICEVDRNGHGRISKRDFHHLQTCTTDNI
*
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mRNA from alignment at E-siliculosus-1a_F_contig1029:36549..38040+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig1029.245.1 ID=mRNA_E-siliculosus-1a_F_contig1029.245.1|Name=mRNA_E-siliculosus-1a_F_contig1029.245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=1492bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1029:36549..38040+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCAACAAAGGTGCTCGCATCAACAACAGGCTCAAGAATGCCGCCCG
TGCCGTCTCCTCCGCGTTAAACAAAGACAGCCGCGAAGCCGGCGCTGACG
GAGATGACGATTCCAAAGTAAGTCGAGGCGTCGAGGCCCGTCGACTGCTA
CGTGCTACGACCGACCGCGCTGTCGCTCAAAAACTTGACGACGTACAATT
CAGTTCGCTCTATCGTAGATCAAGCATAGGCCTTGCGTTCACGCGTTGCC
CACATGACGGTAACCCATCGACTACACATAATGCGGCGTGTGACGTTCGA
CAATAATTAATGCTCGGCCGTTCTCCTCGTTTCCTACCGGACCGCGGTAT
CTACGTGTTGGATGCGGTGCCACGACCGTGCGGGCGAGAAGAGCCCTCAA
CTTCTTTTCAGCGACCTAGAGGTGGATCGACTCAAGATCGCGTTCGACAT
GCATGCAGACGAAGACGAGCACGTGGTCTACGTCGAAGACTTGAAGGACC
TCCTGGAGACGCTCTTTATTGTAGGTGATCGACTACAGCAGTGCAGTACA
TGTACGTCGCACGTCCCTCTACGCTTATCCACAACATTCGAGGGCGACTC
TCACCCACAACGTATGCATGCAGAGTCTTAACATGTTGGAGACGACGAGC
CTTATGCTACATAGGCGATACCTATTGTGTTCCGGAGAGTTGTTGGTGTT
GTCGTCATCGCCGAAGTTGTGGGTAGATGCCGTTGATTCCATCACCGTGT
GGTGGCATTGATGATCGTCCCTCGCGATGTGTCCGTAATGTTTGGTATCC
CGATTCTTCGGGCTCTTATTGACAAAGGTGCCCACCAAGACAGAACTGAG
CTCATTAACTTCAAAGATGGACTCAGACAAGACGGGCAAGGTAGACTTTG
GCTCGTTCTTCGCTGCCATGGCCGCCTTCATGAAGCCGCAGTACGGACGA
GAGAAGCTCGACAAAGCTTTCGACGAAATATCGGGGTGAGCTTCGCAACA
GCAGCGAGGAGAGGGCACTGCTAAATGAATAGAAGAGGTCAGCCAGCGCG
ACCATGAACAACCAATAAACACGTGGTCTACATACACTTGCCCTTTCTAT
CACTGCAGTGTCTTGCTCTACGGCGTTGCTGCCGATTTTCATCGTTCCTC
AGCACGTCACTACTACTACTGCGCCGTCTGCTACCATTACTTGCAGTCTA
CGGGTTTCGCGCCGCCAACCGCAAATTTCCGTCTTTTAACAAAAAACGAC
TTTCAGGAAACTGCGGGCAACTTTTCTCTCATGCCATGTTCCTCTGACAT
TAATTAACATTCAGGGGGTTGGATGAGATCGATGCCAGCTTTCTCCATCG
GACCATGGTTCACCTGGGCCAGTCGACCATCCGCTACGCCGATTGCGAGG
CTATGATCTGCGAAGTGGATCGGAATGGCCACGGGCGTATTTCGAAACGT
GACTTTCATCATCTGCAAACGTGCACCACCGACAACATCTAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1029:36549..38040+

>mRNA_E-siliculosus-1a_F_contig1029.245.1 ID=mRNA_E-siliculosus-1a_F_contig1029.245.1|Name=mRNA_E-siliculosus-1a_F_contig1029.245.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1029:36549..38040+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCTCAACAAAGGTGCTCGCATCAACAACAGGCTCAAGAATGCCGCCCG
TGCCGTCTCCTCCGCGTTAAACAAAGACAGCCGCGAAGCCGGCGCTGACG
GAGATGACGATTCCAAAATGCTCAACAAAGGTGCTCGCATCAACAACAGG
CTCAAGAATGCCGCCCGTGCCGTCTCCTCCGCGTTAAACAAAGACAGCCG
CGAAGCCGGCGCTGACGGAGATGACGATTCCAAAGTGCCCACCAAGACAG
AACTGAGCTCATTAACTTCAAAGATGGACTCAGACAAGACGGGCAAGGTA
GACTTTGGCTCGTTCTTCGCTGCCATGGCCGCCTTCATGAAGCCGCAGTA
CGGACGAGAGAAGCTCGACAAAGCTTTCGACGAAATATCGGGGTGCCCAC
CAAGACAGAACTGAGCTCATTAACTTCAAAGATGGACTCAGACAAGACGG
GCAAGGTAGACTTTGGCTCGTTCTTCGCTGCCATGGCCGCCTTCATGAAG
CCGCAGTACGGACGAGAGAAGCTCGACAAAGCTTTCGACGAAATATCGGG
GGGGTTGGATGAGATCGATGCCAGCTTTCTCCATCGGACCATGGTTCACC
TGGGCCAGTCGACCATCCGCTACGCCGATTGCGAGGCTATGATCTGCGAA
GTGGATCGGAATGGCCACGGGCGTATTTCGAAACGTGACTTTCATCATCT
GCAAACGTGCACCACCGACAACATCTAGGGGGTTGGATGAGATCGATGCC
AGCTTTCTCCATCGGACCATGGTTCACCTGGGCCAGTCGACCATCCGCTA
CGCCGATTGCGAGGCTATGATCTGCGAAGTGGATCGGAATGGCCACGGGC
GTATTTCGAAACGTGACTTTCATCATCTGCAAACGTGCACCACCGACAAC
ATCTAG
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