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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1028.238.1 vs. uniprot
Match: A0A6H5K6J9_9PHAE (IF3_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6J9_9PHAE) HSP 1 Score: 1030 bits (2664), Expect = 0.000e+0 Identity = 627/733 (85.54%), Postives = 642/733 (87.59%), Query Frame = 1
Query: 88 MASRFLRADLRRACRPPSRPTSSNSNAFLSLATTRRDEPSVARSAYNPSALTAAALASPELLCSSVQSSGHAHSESATARSGSGEHGPRLPLPVTGMVPALTSAEQRYVGCWRG-AVGLGLCSRQQQQAGRRFLSSRSAKAGGQTLTNKKIKAEKILLVLETEDGSKEATTVSRQQALAAANAVNLDLVQVSSGKNDQVVCRLMDFKKEEYRKQKQKKANAKRIQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFEEQMEDYEGAVLKHSGGGNGYTRREIECIPKTVRPTTAKPTTSASETPGRYGGGTPEAGEKENPNPPPPRSVVVDKHVVREILSGAAETAQGGSEGELSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVAETASPLKLGSTEISLNDVELYDDLVDETVYDDGDLERERNEARRXXXXXXXXXAKEKVRNAARYAPTRGXXXXXXXXXWKAEIDRXXXXXXXNFDEESGWGEKDDRRTARRAPKGRDQQDAGRRGVVGGDSRAGASGRGGSPKVWSTGGGRRDGSLPNVPQQGAGSFRRGGRRGSDGGSGPREGPPPPSPARAARAPYKWRTSIADAKVAEAGEDREGASAKPWYSRSSSAASLARVARTKDGSGATGA---EEVRGFKARFGGGSMNLAPTNPAPAGTAKATSSKGFRSSSVTAPSAKVKPPRASEKGSDRGVGGQE 2274
MASRFLRADLRR RP RPTSSNSNAFLSLATTR DEPSVA SAY+PSALTAAAL S E LCSSVQSSGHAHSESAT+RSGS EHGPRLPLPVTGM ALTSAEQRYVGCWRG AVGLGLCSRQQQQAG+RFLSSRS KAGGQTLTNKKIKAEKILLVLETEDGSK ATTVSRQQALAAANAVNLDLVQVSSG+NDQVVCRLMDFKKEEYRK+KQ+KANAKRIQKKKEIRL GMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFEEQME+YEGAVLKHSGGGNGYTRREIECIPKTVRPTTAKPTTSASE PGR GGG PEAGEKENP PPP R VVDKHVV E++SGAA TA GGSEGELSSS XXXXXXXXXXXXXXXXXXXXXXXXEDVAETASPLKLGSTEI L+DVELYDDLVDETVYDDGD+ERERNEARR AKEKVRNAARYAPTRGXXXXXXXXX KAEID XXXXXXXNFDEESGWGEKDDRRTARR P GRDQQ GRRGV GGDSRAGAS GGSPKVWSTGGGRRDGS PNV QQGAGSFRRG RRGSDGGSGPREGPPP SPA AARAPYKWRTSIADAKV EAG DREG SAKPWY+ EEVRGFKARFGGGSMNL PTN TAKATSS+GFRSSSVTAPSAKV PP+ASE GSDRGV G+E
Sbjct: 1 MASRFLRADLRRVFRPLGRPTSSNSNAFLSLATTRPDEPSVAPSAYSPSALTAAALDSSEWLCSSVQSSGHAHSESATSRSGSSEHGPRLPLPVTGMFLALTSAEQRYVGCWRGGAVGLGLCSRQQQQAGKRFLSSRSGKAGGQTLTNKKIKAEKILLVLETEDGSKTATTVSRQQALAAANAVNLDLVQVSSGRNDQVVCRLMDFKKEEYRKKKQRKANAKRIQKKKEIRLRGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFEEQMEEYEGAVLKHSGGGNGYTRREIECIPKTVRPTTAKPTTSASEAPGRDGGGIPEAGEKENPIPPPSRGGVVDKHVVLEVVSGAAATAHGGSEGELSSSNSGXXXXXXXXXXXXXXXXXXXXXXXXEDVAETASPLKLGSTEILLDDVELYDDLVDETVYDDGDIERERNEARRREDRQKREEAKEKVRNAARYAPTRGXXXXXXXXXXKAEIDXXXXXXXXNFDEESGWGEKDDRRTARRVPTGRDQQTGGRRGVAGGDSRAGASDSGGSPKVWSTGGGRRDGSFPNVLQQGAGSFRRGDRRGSDGGSGPREGPPPSSPALAARAPYKWRTSIADAKVVEAGGDREGTSAKPWYTSXXXXXXXXXXXXXXXXXXXXXXXXXEEVRGFKARFGGGSMNLTPTNSVAVRTAKATSSQGFRSSSVTAPSAKVNPPKASEVGSDRGVDGEE 733
BLAST of mRNA_E-siliculosus-1a_F_contig1028.238.1 vs. uniprot
Match: D7FJ50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ50_ECTSI) HSP 1 Score: 169 bits (427), Expect = 6.090e-46 Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 1
Query: 694 MDFKKEEYRKQKQKKANAKRIQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFEEQMEDYEGAVL 969
MDFKKEEYRK+KQKKANAKRIQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFEEQME+YEG +
Sbjct: 1 MDFKKEEYRKKKQKKANAKRIQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFEEQMEEYEGVRM 92
BLAST of mRNA_E-siliculosus-1a_F_contig1028.238.1 vs. uniprot
Match: A0A2E1MXZ1_9BACT (Translation initiation factor IF-3 n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E1MXZ1_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 5.060e-11 Identity = 53/139 (38.13%), Postives = 76/139 (54.68%), Query Frame = 1
Query: 526 NKKIKAEKILLVLETEDGSKEATTVSRQQALAAANAVNLDLVQVSSGKNDQVVCRLMDFKKEEYRKQKQKKANAKR--IQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFE 936
N IKA+K++L+ + K+ + R AL A NLDLVQ+S GK +Q VC+++DF K Y+KQK+ K N K I KEIRL +HD K+N KK+LE G+ +K + + R + L +L E
Sbjct: 13 NNSIKADKVMLI---DSEGKKRGVLDRSVALKIAQDNNLDLVQISDGK-EQPVCKILDFGKYLYKKQKKDKLNKKNQHIIHVKEIRLRLNTGEHDLVTKLNKAKKFLEDGNKMKFTIMFRGREISRKDSALEMLNNVAE 147
BLAST of mRNA_E-siliculosus-1a_F_contig1028.238.1 vs. uniprot
Match: A0A2E2A1M5_9BACT (Translation initiation factor IF-3 n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E2A1M5_9BACT) HSP 1 Score: 72.0 bits (175), Expect = 6.430e-11 Identity = 57/156 (36.54%), Postives = 85/156 (54.49%), Query Frame = 1
Query: 520 LTNKKIKAEKILLVLETEDGSKEATTVSRQQALAAANAVNLDLVQVSSGKNDQVVCRLMDFKKEEYRKQKQKKANAKR--IQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQ---EKFEEQMEDYEGAVLK 972
L N I+AEK++L+ +D K+ VS Q AL+ A LDLVQ+S K D VC+++D+ K Y+KQK++K N K I KEIRL +HD K+N KK+LE G+ +K + + R + +L+ + F E E + A L+
Sbjct: 8 LINNFIRAEKVMLI---DDEGKQHGVVSLQMALSIAEEKKLDLVQISDSK-DNPVCKILDYGKYLYKKQKKEKQNRKNQHIIHVKEIRLRLNTGEHDLITKLNKAKKFLEDGNKIKFTIMFRGREIARKDAAMQMLENVADSFNEISEIDKKASLE 159
BLAST of mRNA_E-siliculosus-1a_F_contig1028.238.1 vs. uniprot
Match: A0A2E5U511_9BACT (Translation initiation factor IF-3 n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E5U511_9BACT) HSP 1 Score: 72.0 bits (175), Expect = 6.580e-11 Identity = 54/149 (36.24%), Postives = 80/149 (53.69%), Query Frame = 1
Query: 502 KAGGQTLTNKKIKAEKILLVLETEDGSKEATTVSRQQALAAANAVNLDLVQVSSGKNDQVVCRLMDFKKEEYRKQKQKKANAKR--IQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVL----------EANISLLKRSGNCL 912
K + L N +IKA K+ L+ ++ K VS QAL AN +LDLVQ++ G D VVC+++++ K Y K+KQKK N K+ + KEIR + DHD K+ +K+L GD +K+ + E+ LL+R N L
Sbjct: 3 KKNSEPLINSQIKASKVRLI---DENGKSCGLVSINQALDMANEASLDLVQIA-GNIDPVVCKILNYGKYRYDKEKQKKINKKKQHVIHVKEIRFRPNVGDHDLVIKLKKAEKFLLNGDKLKITVMFRGREFSRQESGYELLERIKNIL 147
BLAST of mRNA_E-siliculosus-1a_F_contig1028.238.1 vs. uniprot
Match: UPI001F3D0553 (translation initiation factor IF-3 n=1 Tax=Litorimonas cladophorae TaxID=1220491 RepID=UPI001F3D0553) HSP 1 Score: 71.2 bits (173), Expect = 1.010e-10 Identity = 54/144 (37.50%), Postives = 81/144 (56.25%), Query Frame = 1
Query: 526 NKKIKAEKILLVLETEDGSKEATTVSRQQALAAANAVNLDLVQVSSGKNDQVVCRLMDFKKEEYRKQKQKKANAK--RIQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLE---ANISLLKRSGNCLNVLQEKFEEQ 942
N+ I A+ +LL+L DG K T V +AL AA A LDLV+V+ G VC+++D+ K + QK+K AN K R Q KEI++ I HD+G K ++K+ +RGD VKV + ++ + R L ++E F E+
Sbjct: 2 NRDITADNVLLILA--DGEKRGT-VPLSEALEAARAAGLDLVEVAPGLTP--VCKVLDYGKMRFENQKKKAANRKNQRTQALKEIKMRPNIDVHDYGVKTKAMQKFFDRGDKVKVTVRFRGREMAHMDRGMTLLARVKEDFAEE 140
BLAST of mRNA_E-siliculosus-1a_F_contig1028.238.1 vs. uniprot
Match: A0A1V4I734_9FIRM (Translation initiation factor IF-3 n=1 Tax=[Clostridium] thermoalcaliphilum TaxID=29349 RepID=A0A1V4I734_9FIRM) HSP 1 Score: 69.3 bits (168), Expect = 7.790e-10 Identity = 46/117 (39.32%), Postives = 74/117 (63.25%), Query Frame = 1
Query: 526 NKKIKAEKILLVLETEDGSKEATTVSRQQALAAANAVNLDLVQVSSGKNDQVVCRLMDFKKEEYRKQKQKKANAKR--IQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVL 870
N++I+ ++I ++L DG ++ +S ++A A NLDLV++S N V C++MDF K +Y + K++K + K+ + KEIRL +I +HD K N KK+LE+GD VKVV+
Sbjct: 24 NEQIRDKEIRVIL---DGGEQLGIMSAKEAQLIATQKNLDLVKISPNANPPV-CKIMDFGKYKYEQSKKEKXSKKKQKVINVKEIRLRPVIEEHDLTTKGNQAKKFLEKGDKVKVVV 136
BLAST of mRNA_E-siliculosus-1a_F_contig1028.238.1 vs. uniprot
Match: A0A2E1ZRP2_9BACT (Translation initiation factor IF-3 n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E1ZRP2_9BACT) HSP 1 Score: 68.2 bits (165), Expect = 1.390e-9 Identity = 56/148 (37.84%), Postives = 81/148 (54.73%), Query Frame = 1
Query: 517 TLTNKKIKAEKILLV--LETEDGSKEATTVSRQQALAAANAVNLDLVQVSSGKNDQVVCRLMDFKKEEYRKQKQKKANAKR--IQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLE---ANISLLKRSGNCLNVLQEKFEE 939
TL N I+AEK++L+ L T+ G + AL+ A +LDLVQ+S GK D +C+++DF K Y+KQK+ K N K I KEIRL +HD K+N KK+LE G+ +K + IS + + L+ + E F E
Sbjct: 7 TLINGSIRAEKVMLIDHLGTQKG-----VMPLSSALSIARENDLDLVQISDGK-DYPICKILDFGKYLYQKQKKLKQNKKNQHIIHVKEIRLRLSTGEHDLITKLNKAKKFLEEGNKIKFSIMFRGREISRKETAVKMLDGVAESFSE 148
BLAST of mRNA_E-siliculosus-1a_F_contig1028.238.1 vs. uniprot
Match: A0A7C4YAJ9_9HYPH (Translation initiation factor IF-3 n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4YAJ9_9HYPH) HSP 1 Score: 67.4 bits (163), Expect = 2.920e-9 Identity = 47/118 (39.83%), Postives = 72/118 (61.02%), Query Frame = 1
Query: 526 NKKIKAEKILLVLETEDGSKEATTVSRQQALAAANAVNLDLVQVSSGKNDQVVCRLMDFKKEEYRKQKQKKANAKRIQKK---KEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVL 870
N+ I+ ++ L+ ++ K V R +ALA A AV LDLV+VS N V C+++D+ K +Y++QK K A A++ QK KEI++ I DHD+ K+ +K++ E GD VKV L
Sbjct: 16 NEAIRVREVRLI---DENGKNVGIVDRLEALARAEAVGLDLVEVSPDANPPV-CKILDYGKYKYQEQK-KAAEARKKQKIVEIKEIKMRPNIDDHDYDVKMRSIKRFFEEGDKVKVTL 128
BLAST of mRNA_E-siliculosus-1a_F_contig1028.238.1 vs. uniprot
Match: W4QQA0_ALKA3 (Translation initiation factor IF-3 n=11 Tax=Bacillaceae TaxID=186817 RepID=W4QQA0_ALKA3) HSP 1 Score: 66.6 bits (161), Expect = 4.440e-9 Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 1
Query: 520 LTNKKIKAEKILLVLETEDGSKEATTVSRQQALAAANAVNLDLVQVSSGKNDQVVCRLMDFKKEEYRKQKQKKANAK--RIQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRSGNCLNVLQEKFEEQMED 951
L N+ I+A ++ L+ D + S+Q+AL A VNLDLV V+ V CR+MD+ K Y +QK++K K +I KE+RL I D+DF K+ + +K+LE+GD VKV + + S VL E+ ++ ED
Sbjct: 2 LVNEGIRAREVRLIGANGD---QVGVKSKQEALEMAQNVNLDLVCVAPTAKPPV-CRIMDYGKFRYEQQKKEKEARKNQKIINVKEVRLSPTIEDNDFNTKLRNARKFLEKGDKVKVAIRFRGRAITHSQIGRKVL-ERLAKECED 142
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 2277 |
| Model size | 2277 |
| Exons | 6 |
| Ec32 ortholog | Ec-10_000130.1 |
| Ec32 ortholog description | Translation initiation factor 3, N-terminal |
| Hectar predicted targeting category | other localisation |
| BRITE | ko00000,ko03012,ko03029 |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Sporolactobacillaceae |
| COG Functional cat. | J |
| EggNOG OGs | 1V1RC@1239,26NPQ@186821,4HFUS@91061,COG0290@1,COG0290@2 |
| EggNOG free text desc. | IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins |
| GOs | GO:0000049,GO:0001731,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006518,GO:0006807,GO:0006950,GO:0006996,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0022411,GO:0022607,GO:0022613,GO:0022618,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0032268,GO:0032270,GO:0032790,GO:0032984,GO:0032988,GO:0032991,GO:0034248,GO:0034250,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0043021,GO:0043022,GO:0043024,GO:0043043,GO:0043170,GO:0043254,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045727,GO:0045948,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0060255,GO:0065003,GO:0065007,GO:0070992,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0097159,GO:1901193,GO:1901195,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1903008,GO:1904688,GO:1904690,GO:1990856,GO:1990904,GO:2000112,GO:2000765,GO:2000767 |
| KEGG ko | ko:K02520 |
| Preferred name | infC |
| Seed eggNOG ortholog | 1395513.P343_01945 |
| Seed ortholog evalue | 6.6e-09 |
| Seed ortholog score | 69.7 |
| Taxonomic scope | Bacteria |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1028.238.1 >prot_E-siliculosus-1a_F_contig1028.238.1 ID=prot_E-siliculosus-1a_F_contig1028.238.1|Name=mRNA_E-siliculosus-1a_F_contig1028.238.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=759bp
MHDAAQQAGHGSIAVLVLPALCRVVHRQAMASRFLRADLRRACRPPSRPT
SSNSNAFLSLATTRRDEPSVARSAYNPSALTAAALASPELLCSSVQSSGH
AHSESATARSGSGEHGPRLPLPVTGMVPALTSAEQRYVGCWRGAVGLGLC
SRQQQQAGRRFLSSRSAKAGGQTLTNKKIKAEKILLVLETEDGSKEATTV
SRQQALAAANAVNLDLVQVSSGKNDQVVCRLMDFKKEEYRKQKQKKANAK
RIQKKKEIRLGGMIADHDFGRKVNDVKKYLERGDVVKVVLEANISLLKRS
GNCLNVLQEKFEEQMEDYEGAVLKHSGGGNGYTRREIECIPKTVRPTTAK
PTTSASETPGRYGGGTPEAGEKENPNPPPPRSVVVDKHVVREILSGAAET
AQGGSEGELSSSNSGGNAAGESVDSSSEEESGEDSSSDEEDVAETASPLK
LGSTEISLNDVELYDDLVDETVYDDGDLERERNEARRREDRRKREEAKEK
VRNAARYAPTRGGGGGGGRKKWKAEIDREGGGGGDNFDEESGWGEKDDRR
TARRAPKGRDQQDAGRRGVVGGDSRAGASGRGGSPKVWSTGGGRRDGSLP
NVPQQGAGSFRRGGRRGSDGGSGPREGPPPPSPARAARAPYKWRTSIADA
KVAEAGEDREGASAKPWYSRSSSAASLARVARTKDGSGATGAEEVRGFKA
RFGGGSMNLAPTNPAPAGTAKATSSKGFRSSSVTAPSAKVKPPRASEKGS
DRGVGGQE* back to topmRNA from alignment at E-siliculosus-1a_F_contig1028:1313..7663+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1028.238.1 ID=mRNA_E-siliculosus-1a_F_contig1028.238.1|Name=mRNA_E-siliculosus-1a_F_contig1028.238.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=6351bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1028:1313..7663+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATGATGCAGCACAACAAGCTGGACACGGGAGCATAGCTGTGCTCGT
GCTACCAGCCCTCTGCCGAGTGGTACATCGACAGGCAATGGCATCAAGGT
TCCTTCGAGCCGATCTGCGGCGCGCTTGCAGGCCTCCTTCCAGGCCTACG
AGCAGCAACAGCAATGCCTTCCTCTCTTTGGCCACGACCCGGCGAGATGA
ACCCTCGGTGGCACGTTCGGCATACAATCCGTCCGCATTGACAGCAGCAG
CTCTTGCTTCGCCGGAGTTGCTTTGTTCCAGCGTCCAGTCCTCTGGCCAT
GCACACAGCGAGTCGGCAACTGCGCGTAGCGGTAGTGGCGAGCACGGTCC
CCGGCTTCCGTTACCTGTCACCGGGATGGTTCCGGCCTTGACATCAGCCG
AGCAGCGCTACGTCGGTTGCTGGAGAGGGGCGGTAGGGTTAGGGTTGTGC
TCAAGACAGCAGCAACAGGCAGGGAGACGGTTCCTCAGCAGTCGCAGCGC
CAAAGCCGGTGGCCAGACGTGAGTATGATTGATGCTTTGCATAGCCCGAG
TGCCTACGTACGTACATTTGCACGCGACAAGGATCGAATACGAAGTACCA
AAGGTGCTTTCTACAGGTCGACGCTCTGCCTTCTTTTTCTCTCTTGGTCA
GTGTGGTCTACCCCTTGCTTGAGCTGATTGCTTTGCCTGTACAACCTCAA
GGGCTTGAGCTGCTTGCTAATAAGCTGTTGCCTGGAGTGCTTGAACACAA
ACCGGGCCGCCGATACCGCGTGGCATAGGACTTTTGGCAACTCTGTCGGC
TGTGCCTGGATAGGAACTGCGGTTGCATAGGCCAACACAATCTATCCTGC
ACGCAACGCGTGCTTCGTTGCACCAAATGCGGCGAAATTACTTCCCGAAC
CTGCTGTGTTCACGACCCTCCGGATTTGGGGCGCACACGAAGCATGGACC
GTGAGTAGCACATGTAGCATCCAGCATTTTTTTTTGTGAGACCCTTGTGT
TTCGACTTGTTCGTATTGCTGATTTCCAGCAAGAACCACGCACACCACGC
AGTACAACCTCGACTGTTCAGCGCTGAAGTGGTGTAGGGTGACGTTCGAA
ACTCGTACCCACTGGGCGCTGCGCACGTCCTTACCTTCTGATGTTTTGAC
CTCCTATTCTCCCGCACCCATGGTACTTGGACCTTTTGCATCTTACATTA
AGTTGTTATCTTGGTGAAAGGGAAACCGCTTCGGTATGTAGGAATCATCG
TGGCGTTGCCCAATTTCGGGTTAGGGCATCAGCCTGAAGAACAGCAGTAA
AACGCTTCGAGTACCATACAAAACAATGACCGTGTTCTTAGGCCAGTTGT
TATGGAAAGAATTCCCAACTGGGAATCCCGATATTACGCCTTTTACATCC
AAACCCCCATGCGCCAGCAGGAGTTCTACGCACTTGGTGGGAAAAGCACA
CCAAAGCGCTTTGTCAATCAGTACGCGCCTCACAGAAATCCGTTTGCGAT
CAAACCTTCGAGGCTGTAGACTACATTGCTGTGAGCCTCTCGGAGCCAAG
TTTGGGGAGCTGGGGTGGAGTGTGTGTTCATCATGCTTGGAAAAATAGGA
TTCCAATCTGGGAATATTTGGACGATCCTGCGTGGGAATTCCTCATGAAT
TCCAAACTGGAATTGGTTGAAATCCCAATCTGGGAATTACGAATTTGCTT
TCATATCCGAGGCTACTCTGTGCACACTCCATTCTAGCGGCCCAAACTTG
GCTCCGCAAAGCTCACAGCAGTGGACTGTACAGCCTCGGTGGTTTGATAA
GGAACAGGTCTCTGTGAGGCAAGGACTAAGTAACGAAGTGCCGTGGTGGG
CTCTGCTTGCTATCCAGTACGCAGACCTCCTCTTTTGGGGGGATGGCTAA
CCATTTTCTGTCGACCCCCCGGATTCCTATCTGGGAAAATCTACCGTAAC
AACTGGCCTTAACACGTGTCCGCGGTGCTGCAATAGGCTTACGAACAAGA
AGATCAAGGCCGAGAAGATTCTGCTGGTGTTGGAAACAGAAGACGGGTCC
AAGGAGGCCACCACGGTCTCTCGGCAGCAGGCGCTCGCCGCCGCCAATGC
TGTAAACCTCGATCTGGTGCAGGGTGAGCAGGGAGACCCGGATACTTTCA
CATCTGACGTGTGGTTGATGTTGACAACAACTCGCTTCGAGAGGCATATT
TGTTCGCTTCTTCTTTTTTGTCTACAAGAAGAAAACGAATTAATGTTTTA
TCAGCAAGAGTCCAGATCAATTTGCGCGAATGTTGAAGGTTTAAGGTAAG
TATTATGCGGTGTGGTGCAGGCTAGCCATGGTTTGAAGCAGGCAAATGTG
TCGCTGCGGCAGAGGGATAATCTTGATCGCGTGCATGTTGCTGTGCGGAG
CTTGAGAGCGAGACGCAGCAGCAGTGCTGTTGTTGTATGGTCGAAACAAG
ACAAGACAAAAATTGGCGTTCCTTCATCTACAAGCATCTTCGTGTTAGCA
TTCCCAAGAGGGACGAAGCAACATGTTGAGCACGTTCACCTCCCTCCGCT
CGACCCTTCCACGCCCCCAAGTTGACAATCATTTTTTGTCTCCGTGTATC
CCCAACGCCTTACTTCGCACATCTCTCACCTGCTTGGCCTCCATGTTTGT
TCCCTTCGCGTATTCCTCCACGTCGGATGATTGACGTGGCCGGCCGCTGG
TCGGTACAACGCTAACAAAACAAATAAAAGTGAGTAGCGGTAAGAACGAC
CAGGTGGTATGCAGGCTCATGGACTTCAAGAAGGAGGAGTACCGGAAGCA
GAAGCAAAAAAAAGCCAACGCGAAAAGGATCCAGAAGAAGAAGGAGATAC
GATTGGGGGTGCGTGCCGTGGCTGGCGTGTTGTTTTATGCATATAGGGTC
AACTCCTGTGGTCTCATTTCGCAGTGTGATTTTGTGCTTGCTGTCTGTCC
TTCTATTCCCCGCCGTTTGCAGTATGCTCCGTGCTCAATTATCACCCGTA
CATCCACAAGGAATTCCCAAGAGGCAAACTATGTGCAGTACTTAGTCCTC
TGTACCCCTAGCTTTCTTAGGCAACAAGAAGGGGAAAGCGTCGGTGGGGA
TCACCTCGCTACTGCTTGTATGTGTGGCTCAGCTTACTCTAAGATGCCAC
AACTTTGTTCGCTCCAACTATCTTTCAAGTTGGTCACATAATATTGCCTA
GTTACACTGCTATCCAACGTGTTCATGTCGAGTTCTTGATTATTGGCGTC
CTCACCTGTCTTCGAGAACCCAGTTCGGTTTCGTGTATCTCGCCGAAAAA
CAGAAACAATGGCCAAGCTGCAGTAAGTCATCACAACACGCCGAGTATCG
TGAACACTGCCCACCGGCAAACTCTGTTCTAGCGCACACCCTTTTTCCCG
TTCTGGAATCCAAACTCGTCTAGGTATAGCGGCTCCTTCTTCCTTGCTTG
TCTTGATAGGGTCTTTTGTTTAGCCGCTCGCAACGCAGCACGAATATTGG
TCCTTCGTACATGTGGTTACTGCCGCACCGCCTCCAATTTTCTTTCCAGG
GCATGATCGCGGACCACGACTTTGGCAGGAAAGTGAACGATGTCAAGAAG
TATTTGGAGAGGGGGGACGTCGTCAAGGTAAGAACCCAAACGCTTAGGCT
GGTGCAAGCTGCTGAAGAAGTGCAGGCAATATGACATTGTGTCCCGTGTT
CAATGTGCTCCTTTCGCGGGTATGTTCCCGCCATGTCTCGAGTTTGTGTT
TTCACTCTCTTCCTCACTTATTGTTGCGTGGGTTCTTCTCTCGACTTGCA
TCATGCAAACAACATAACCACGGCAGGTGGTATTGGAGGCGAACATATCG
CTACTCAAGCGGTCCGGGAACTGCTTGAACGTCTTGCAGGAGAAATTCGA
GGAGCAAATGGAAGACTACGAAGGGGTGCGTATGTCCTTTATTTTCTTCT
TTACTGTTGGTTTCATTGATGCGGTATGACAAGACAACTCCCTCGGTCCC
AGCCGAACCCACGATGCTGCCGATCAATCGAAAAACGCAGGCGGCACGTC
CATACCCACCAGAAAGAAAGCAAGTAACGCGCAAACGTTTGAGATGCGGA
GAATGGTCTGTTGTTGCCCTCGAGGGTACCGTTGCTGCGAACGTCGTGGG
ATTTAGAACCTCGGCCACCTGGCTCGAGAAACATAGCTTGAGTTTCCATA
ACAGAACCAGAAACGTTCTAGCTCATTTCTCTGACCTATGTCCTCAACAC
CGCCTCCCTCCGCCGGGCGAGGGTTGATAACTTTTTGTTGTGCTGGCGAA
GGAAGCCTTGCTTCCAACTTGCAGCTCAACAACGTTTTAGAACCCGCAAC
GACCGAATCCCTGCAAAACGCGACACTGCGTCGGGGCTTCCATGTCGCTT
ATGGGGGCGTTCCACCGGTTGTATGTCGAGCGCATTCGATCACGAATTGT
GGAACGGCACACAATGCCACCAAGTGGATATTTGGCTTGTAGTTGAATTT
GGTTCTGCCACCTTCATGCTGTTGAAATTGCTTTGCTTGTCGTACACCCA
ACCGCCCGTGTTATAAAACGACAGAGAGTTCCGAGCTTTCCTGACAAACG
AGTCGTTCATGCCGACATTGGTTGACGAACGGTTCGAAGACGCTAGCGAA
GCTTGATTCCGGGGGTCTTGTGTGTTTTCCGACTAGTTATGGAACGCGCG
TTTCAGGTTGTGCCATCTTGCTCAATTAGGAAGAAAATGTCAATCGTTGT
CTGCAACGAAATTAATCGGATCTTTCCCTACCGACTGCCGCTCATCCCTT
AAGAAAGAGGAGATGGTTAACGGAAATGGTTAACGAATAACCTACCATAG
CATGAGGCTCGTATTGCTTTCGCAGAGCATTTTGTAGTGCACTCGCCTCT
CGCCCTCTTGTCGCAAGAAGCGCTTTTGGCCTGCCCAACTCGACTCCGCG
TTACGTACTTCTGTCATGCCGCGAGCCGTATGGATTCATTTCACTGCGAA
CTTCATGGATTAATCTCCCTCGGTTCCTTTGTAGGCTGTGCTGAAGCACT
CTGGAGGGGGGAACGGGTACACCCGGCGGGAAATCGAATGCATTCCGAAA
ACCGTCAGGCCGACCACCGCAAAGCCGACAACGTCGGCCTCTGAGACGCC
GGGGAGATATGGTGGCGGTACTCCTGAGGCTGGGGAGAAGGAGAACCCCA
ACCCCCCGCCGCCGCGTAGCGTGGTGGTCGACAAACATGTCGTGCGCGAA
ATTCTCAGCGGAGCAGCAGAAACAGCGCAAGGAGGGAGTGAAGGAGAGCT
ATCTTCTTCGAACTCTGGTGGTAACGCCGCTGGTGAATCCGTTGACAGTT
CTTCGGAAGAGGAATCAGGAGAAGATTCCTCGTCAGACGAAGAGGATGTG
GCTGAAACAGCGTCGCCGTTGAAGTTGGGAAGCACTGAGATCTCGTTGAA
TGATGTGGAGCTGTACGACGATCTCGTGGATGAGACCGTCTACGACGACG
GCGACCTTGAGAGAGAAAGAAACGAGGCCCGAAGACGCGAAGACCGGCGG
AAGCGGGAAGAAGCTAAGGAAAAGGTTAGAAATGCGGCCCGCTACGCTCC
CACGCGCGGTGGCGGCGGAGGCGGTGGACGCAAAAAGTGGAAGGCTGAGA
TTGACCGCGAGGGCGGTGGGGGCGGCGACAATTTTGATGAGGAATCTGGG
TGGGGTGAAAAGGATGACAGACGGACAGCACGCCGGGCGCCCAAGGGGAG
AGATCAGCAAGACGCCGGAAGGAGGGGCGTCGTGGGTGGGGACAGTAGAG
CGGGTGCCAGCGGCAGGGGAGGTAGTCCGAAGGTGTGGTCAACAGGCGGC
GGTCGTCGAGATGGCTCCCTTCCAAACGTGCCACAGCAGGGGGCGGGCAG
CTTTAGACGAGGGGGTCGAAGGGGCAGCGATGGCGGCAGTGGTCCACGTG
AGGGGCCTCCTCCGCCTTCACCAGCACGTGCAGCCCGCGCACCGTACAAG
TGGCGGACTTCAATTGCCGATGCAAAGGTGGCGGAGGCAGGCGAGGACAG
AGAAGGGGCATCCGCGAAGCCCTGGTACAGTAGGTCTAGCAGTGCCGCGT
CACTGGCACGGGTGGCACGCACGAAGGATGGCAGCGGGGCTACTGGAGCC
GAGGAGGTTAGGGGGTTTAAGGCTAGGTTCGGCGGAGGATCCATGAATCT
GGCGCCTACAAACCCAGCTCCTGCTGGTACTGCCAAGGCAACATCCAGCA
AAGGGTTTCGCAGTTCGTCTGTGACTGCACCTTCTGCGAAGGTGAAACCG
CCAAGGGCATCTGAAAAAGGCTCGGACCGAGGGGTCGGCGGCCAGGAATG
A back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1028:1313..7663+ >mRNA_E-siliculosus-1a_F_contig1028.238.1 ID=mRNA_E-siliculosus-1a_F_contig1028.238.1|Name=mRNA_E-siliculosus-1a_F_contig1028.238.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=4554bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1028:1313..7663+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCATGATGCAGCACAACAAGCTGGACACGGGAGCATAGCTGTGCTCGT
GCTACCAGCCCTCTGCCGAGTGGTACATCGACAGGCAATGGCATCAAGGT
TCCTTCGAGCCGATCTGCGGCGCGCTTGCAGGCCTCCTTCCAGGCCTACG
AGCAGCAACAGCAATGCCTTCCTCTCTTTGGCCACGACCCGGCGAGATGA
ACCCTCGGTGGCACGTTCGGCATACAATCCGTCCGCATTGACAGCAGCAG
CTCTTGCTTCGCCGGAGTTGCTTTGTTCCAGCGTCCAGTCCTCTGGCCAT
GCACACAGCGAGTCGGCAACTGCGCGTAGCGGTAGTGGCGAGCACGGTCC
CCGGCTTCCGTTACCTGTCACCGGGATGGTTCCGGCCTTGACATCAGCCG
AGCAGCGCTACGTCGGTTGCTGGAGAGGGGCGGTAGGGTTAGGGTTGTGC
TCAAGACAGCAGCAACAGGCAGGGAGACGGTTCCTCAGCAGTCGCAGCGC
CAAAGCCGGTGGCCAGACATGCATGATGCAGCACAACAAGCTGGACACGG
GAGCATAGCTGTGCTCGTGCTACCAGCCCTCTGCCGAGTGGTACATCGAC
AGGCAATGGCATCAAGGTTCCTTCGAGCCGATCTGCGGCGCGCTTGCAGG
CCTCCTTCCAGGCCTACGAGCAGCAACAGCAATGCCTTCCTCTCTTTGGC
CACGACCCGGCGAGATGAACCCTCGGTGGCACGTTCGGCATACAATCCGT
CCGCATTGACAGCAGCAGCTCTTGCTTCGCCGGAGTTGCTTTGTTCCAGC
GTCCAGTCCTCTGGCCATGCACACAGCGAGTCGGCAACTGCGCGTAGCGG
TAGTGGCGAGCACGGTCCCCGGCTTCCGTTACCTGTCACCGGGATGGTTC
CGGCCTTGACATCAGCCGAGCAGCGCTACGTCGGTTGCTGGAGAGGGGCG
GTAGGGTTAGGGTTGTGCTCAAGACAGCAGCAACAGGCAGGGAGACGGTT
CCTCAGCAGTCGCAGCGCCAAAGCCGGTGGCCAGACGCTTACGAACAAGA
AGATCAAGGCCGAGAAGATTCTGCTGGTGTTGGAAACAGAAGACGGGTCC
AAGGAGGCCACCACGGTCTCTCGGCAGCAGGCGCTCGCCGCCGCCAATGC
TGTAAACCTCGATCTGGTGCAGGGCTTACGAACAAGAAGATCAAGGCCGA
GAAGATTCTGCTGGTGTTGGAAACAGAAGACGGGTCCAAGGAGGCCACCA
CGGTCTCTCGGCAGCAGGCGCTCGCCGCCGCCAATGCTGTAAACCTCGAT
CTGGTGCAGGTGAGTAGCGGTAAGAACGACCAGGTGGTATGCAGGCTCAT
GGACTTCAAGAAGGAGGAGTACCGGAAGCAGAAGCAAAAAAAAGCCAACG
CGAAAAGGATCCAGAAGAAGAAGGAGATACGATTGGGGTGAGTAGCGGTA
AGAACGACCAGGTGGTATGCAGGCTCATGGACTTCAAGAAGGAGGAGTAC
CGGAAGCAGAAGCAAAAAAAAGCCAACGCGAAAAGGATCCAGAAGAAGAA
GGAGATACGATTGGGGGGCATGATCGCGGACCACGACTTTGGCAGGAAAG
TGAACGATGTCAAGAAGTATTTGGAGAGGGGGGACGTCGTCAAGGGCATG
ATCGCGGACCACGACTTTGGCAGGAAAGTGAACGATGTCAAGAAGTATTT
GGAGAGGGGGGACGTCGTCAAGGTGGTATTGGAGGCGAACATATCGCTAC
TCAAGCGGTCCGGGAACTGCTTGAACGTCTTGCAGGAGAAATTCGAGGAG
CAAATGGAAGACTACGAAGGGGTGGTATTGGAGGCGAACATATCGCTACT
CAAGCGGTCCGGGAACTGCTTGAACGTCTTGCAGGAGAAATTCGAGGAGC
AAATGGAAGACTACGAAGGGGCTGTGCTGAAGCACTCTGGAGGGGGGAAC
GGGTACACCCGGCGGGAAATCGAATGCATTCCGAAAACCGTCAGGCCGAC
CACCGCAAAGCCGACAACGTCGGCCTCTGAGACGCCGGGGAGATATGGTG
GCGGTACTCCTGAGGCTGGGGAGAAGGAGAACCCCAACCCCCCGCCGCCG
CGTAGCGTGGTGGTCGACAAACATGTCGTGCGCGAAATTCTCAGCGGAGC
AGCAGAAACAGCGCAAGGAGGGAGTGAAGGAGAGCTATCTTCTTCGAACT
CTGGTGGTAACGCCGCTGGTGAATCCGTTGACAGTTCTTCGGAAGAGGAA
TCAGGAGAAGATTCCTCGTCAGACGAAGAGGATGTGGCTGAAACAGCGTC
GCCGTTGAAGTTGGGAAGCACTGAGATCTCGTTGAATGATGTGGAGCTGT
ACGACGATCTCGTGGATGAGACCGTCTACGACGACGGCGACCTTGAGAGA
GAAAGAAACGAGGCCCGAAGACGCGAAGACCGGCGGAAGCGGGAAGAAGC
TAAGGAAAAGGTTAGAAATGCGGCCCGCTACGCTCCCACGCGCGGTGGCG
GCGGAGGCGGTGGACGCAAAAAGTGGAAGGCTGAGATTGACCGCGAGGGC
GGTGGGGGCGGCGACAATTTTGATGAGGAATCTGGGTGGGGTGAAAAGGA
TGACAGACGGACAGCACGCCGGGCGCCCAAGGGGAGAGATCAGCAAGACG
CCGGAAGGAGGGGCGTCGTGGGTGGGGACAGTAGAGCGGGTGCCAGCGGC
AGGGGAGGTAGTCCGAAGGTGTGGTCAACAGGCGGCGGTCGTCGAGATGG
CTCCCTTCCAAACGTGCCACAGCAGGGGGCGGGCAGCTTTAGACGAGGGG
GTCGAAGGGGCAGCGATGGCGGCAGTGGTCCACGTGAGGGGCCTCCTCCG
CCTTCACCAGCACGTGCAGCCCGCGCACCGTACAAGTGGCGGACTTCAAT
TGCCGATGCAAAGGTGGCGGAGGCAGGCGAGGACAGAGAAGGGGCATCCG
CGAAGCCCTGGTACAGTAGGTCTAGCAGTGCCGCGTCACTGGCACGGGTG
GCACGCACGAAGGATGGCAGCGGGGCTACTGGAGCCGAGGAGGTTAGGGG
GTTTAAGGCTAGGTTCGGCGGAGGATCCATGAATCTGGCGCCTACAAACC
CAGCTCCTGCTGGTACTGCCAAGGCAACATCCAGCAAAGGGTTTCGCAGT
TCGTCTGTGACTGCACCTTCTGCGAAGGTGAAACCGCCAAGGGCATCTGA
AAAAGGCTCGGACCGAGGGGTCGGCGGCCAGGAATGAGCTGTGCTGAAGC
ACTCTGGAGGGGGGAACGGGTACACCCGGCGGGAAATCGAATGCATTCCG
AAAACCGTCAGGCCGACCACCGCAAAGCCGACAACGTCGGCCTCTGAGAC
GCCGGGGAGATATGGTGGCGGTACTCCTGAGGCTGGGGAGAAGGAGAACC
CCAACCCCCCGCCGCCGCGTAGCGTGGTGGTCGACAAACATGTCGTGCGC
GAAATTCTCAGCGGAGCAGCAGAAACAGCGCAAGGAGGGAGTGAAGGAGA
GCTATCTTCTTCGAACTCTGGTGGTAACGCCGCTGGTGAATCCGTTGACA
GTTCTTCGGAAGAGGAATCAGGAGAAGATTCCTCGTCAGACGAAGAGGAT
GTGGCTGAAACAGCGTCGCCGTTGAAGTTGGGAAGCACTGAGATCTCGTT
GAATGATGTGGAGCTGTACGACGATCTCGTGGATGAGACCGTCTACGACG
ACGGCGACCTTGAGAGAGAAAGAAACGAGGCCCGAAGACGCGAAGACCGG
CGGAAGCGGGAAGAAGCTAAGGAAAAGGTTAGAAATGCGGCCCGCTACGC
TCCCACGCGCGGTGGCGGCGGAGGCGGTGGACGCAAAAAGTGGAAGGCTG
AGATTGACCGCGAGGGCGGTGGGGGCGGCGACAATTTTGATGAGGAATCT
GGGTGGGGTGAAAAGGATGACAGACGGACAGCACGCCGGGCGCCCAAGGG
GAGAGATCAGCAAGACGCCGGAAGGAGGGGCGTCGTGGGTGGGGACAGTA
GAGCGGGTGCCAGCGGCAGGGGAGGTAGTCCGAAGGTGTGGTCAACAGGC
GGCGGTCGTCGAGATGGCTCCCTTCCAAACGTGCCACAGCAGGGGGCGGG
CAGCTTTAGACGAGGGGGTCGAAGGGGCAGCGATGGCGGCAGTGGTCCAC
GTGAGGGGCCTCCTCCGCCTTCACCAGCACGTGCAGCCCGCGCACCGTAC
AAGTGGCGGACTTCAATTGCCGATGCAAAGGTGGCGGAGGCAGGCGAGGA
CAGAGAAGGGGCATCCGCGAAGCCCTGGTACAGTAGGTCTAGCAGTGCCG
CGTCACTGGCACGGGTGGCACGCACGAAGGATGGCAGCGGGGCTACTGGA
GCCGAGGAGGTTAGGGGGTTTAAGGCTAGGTTCGGCGGAGGATCCATGAA
TCTGGCGCCTACAAACCCAGCTCCTGCTGGTACTGCCAAGGCAACATCCA
GCAAAGGGTTTCGCAGTTCGTCTGTGACTGCACCTTCTGCGAAGGTGAAA
CCGCCAAGGGCATCTGAAAAAGGCTCGGACCGAGGGGTCGGCGGCCAGGA
ATGA back to top
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