|
|
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: D7FS46_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS46_ECTSI) HSP 1 Score: 205 bits (522), Expect = 1.250e-64 Identity = 145/174 (83.33%), Postives = 146/174 (83.91%), Query Frame = 1 Query: 1 ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVLGWGAAADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 522
A + GSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTC EAAVSFVLGWGAAADPNADGDDG XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL
Sbjct: 16 AARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCLEAAVSFVLGWGAAADPNADGDDGNXXXXXXXXXXXDSTKGSKAEAGKKLFGRGDGSGXXXXXXXXXXXXXXXXXXXXXXXXEPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 189
BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: A0A6H5JK77_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK77_9PHAE) HSP 1 Score: 195 bits (495), Expect = 1.840e-54 Identity = 165/174 (94.83%), Postives = 167/174 (95.98%), Query Frame = 1 Query: 1 ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVLGWGAAADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 522
A + GSDKPLDADSLLPLLVHSLAHANLPRVHEAL+FLRNFQGAGWGGEQEYYVTC EAAVSFVL WGA ADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL
Sbjct: 955 AARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALSFLRNFQGAGWGGEQEYYVTCLEAAVSFVLDWGAVADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 1127
BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: A0A7S2GUB1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUB1_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 2.820e-11 Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1 Query: 22 DKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVL 198
DKPLDAD + P+LV ++ H+ LP +H + FLRNF A GE Y++TC EAAVSFV+
Sbjct: 135 DKPLDADVMFPILVLAIVHSKLPHMHSYIFFLRNFAIADTTGEAAYFLTCCEAAVSFVM 193
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 1 |
| Cds size | 525 |
| Model size | 525 |
| Exons | 2 |
| Ec32 ortholog | Ec-16_004390.1 |
| Ec32 ortholog description | Vacuolar sorting protein 9 |
| Hectar predicted targeting category | other localisation |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| COG Functional cat. | S |
| EggNOG OGs | 29NWZ@1,2QTH6@2759 |
| EggNOG free text desc. | Vacuolar sorting protein 9 (VPS9) domain |
| Seed eggNOG ortholog | 2880.D7FS46 |
| Seed ortholog evalue | 1.8e-50 |
| Seed ortholog score | 205.7 |
| Taxonomic scope | Eukaryota |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10272.236.1 >prot_E-siliculosus-1a_F_contig10272.236.1 ID=prot_E-siliculosus-1a_F_contig10272.236.1|Name=mRNA_E-siliculosus-1a_F_contig10272.236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp
ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGE
QEYYVTCFEAAVSFVLGWGAAADPNADGDDGNNNKKDDDNTTTDSAKGSK
AAAGKKLLGRGDDSGGSSSGNGASAAGRRAARRAGEEEEEPDKGREALVR
LGIFLEKHEVQEDTVDVLSSAGWL* back to topmRNA from alignment at E-siliculosus-1a_F_contig10272:1198..2061- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10272.236.1 ID=mRNA_E-siliculosus-1a_F_contig10272.236.1|Name=mRNA_E-siliculosus-1a_F_contig10272.236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10272:1198..2061- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCTTGCCTTGCAGGGATCGGACAAGCCTTTAGACGCCGACAGCCTGTT
GCCTCTGCTCGTCCATTCCCTGGCGCACGCGAACCTCCCGCGAGTCCACG
AGGCGCTGAATTTTCTCAGAAATTTCCAGGGCGCTGGTTGGGGAGGGGAG
CAGGAGTACTACGTGACGTGCTTGTGAGTCGAGGTAGTCCTTTTGTTAGG
TGGGCGGTTCTGAGTGCTGCATCAATTTTGCGTCCAGGTGTAAACACATC
TTTTGCGCCAGCGCCTTGTTTAAGGGATACAACAGGGGGGGATTCTGCGG
CGTTCGTGTGGCGGGGTATCTACCTCGTTGTTTGAAGCTTCCGGCGGGGG
GTGACGGCTCCGTGTCGGTCGCTTTCGATCTCTACTTTTCGTCTCGTATG
TGGGAAAACGCCCCCCTTCCCGTATGCATATGCCACCGCGAAGGCACTTG
TAACCGCCCCCACCCCCCCTCCGCCGCTCATTCTTCTCCCCCCCCCCCTC
CCCTTTCGATAGCGAGGCCGCGGTTTCTTTCGTGCTAGGCTGGGGGGCTG
CTGCCGACCCCAACGCCGACGGGGATGACGGCAATAACAACAAGAAGGAT
GACGACAATACCACCACCGACAGCGCCAAAGGGTCGAAGGCGGCGGCGGG
GAAGAAACTACTTGGTCGAGGGGATGACAGTGGCGGTAGCAGCAGCGGTA
ACGGTGCATCGGCTGCAGGAAGACGGGCGGCGCGGCGGGCGGGAGAAGAG
GAGGAAGAGCCGGACAAGGGGCGGGAAGCCTTGGTCCGCCTCGGAATTTT
CTTGGAAAAGCATGAGGTTCAGGAGGACACGGTGGACGTCTTGTCCTCCG
CCGGCTGGCTCTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10272:1198..2061- >mRNA_E-siliculosus-1a_F_contig10272.236.1 ID=mRNA_E-siliculosus-1a_F_contig10272.236.1|Name=mRNA_E-siliculosus-1a_F_contig10272.236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10272:1198..2061- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCTTGCCTTGCAGGGATCGGACAAGCCTTTAGACGCCGACAGCCTGTT
GCCTCTGCTCGTCCATTCCCTGGCGCACGCGAACCTCCCGCGAGTCCACG
AGGCGCTGAATTTTCTCAGAAATTTCCAGGGCGCTGGTTGGGGAGGGGAG
CAGGAGTACTACGTGACGTGCTTGCTCTTGCCTTGCAGGGATCGGACAAG
CCTTTAGACGCCGACAGCCTGTTGCCTCTGCTCGTCCATTCCCTGGCGCA
CGCGAACCTCCCGCGAGTCCACGAGGCGCTGAATTTTCTCAGAAATTTCC
AGGGCGCTGGTTGGGGAGGGGAGCAGGAGTACTACGTGACGTGCTTCGAG
GCCGCGGTTTCTTTCGTGCTAGGCTGGGGGGCTGCTGCCGACCCCAACGC
CGACGGGGATGACGGCAATAACAACAAGAAGGATGACGACAATACCACCA
CCGACAGCGCCAAAGGGTCGAAGGCGGCGGCGGGGAAGAAACTACTTGGT
CGAGGGGATGACAGTGGCGGTAGCAGCAGCGGTAACGGTGCATCGGCTGC
AGGAAGACGGGCGGCGCGGCGGGCGGGAGAAGAGGAGGAAGAGCCGGACA
AGGGGCGGGAAGCCTTGGTCCGCCTCGGAATTTTCTTGGAAAAGCATGAG
GTTCAGGAGGACACGGTGGACGTCTTGTCCTCCGCCGGCTGGCTCTGACG
AGGCCGCGGTTTCTTTCGTGCTAGGCTGGGGGGCTGCTGCCGACCCCAAC
GCCGACGGGGATGACGGCAATAACAACAAGAAGGATGACGACAATACCAC
CACCGACAGCGCCAAAGGGTCGAAGGCGGCGGCGGGGAAGAAACTACTTG
GTCGAGGGGATGACAGTGGCGGTAGCAGCAGCGGTAACGGTGCATCGGCT
GCAGGAAGACGGGCGGCGCGGCGGGCGGGAGAAGAGGAGGAAGAGCCGGA
CAAGGGGCGGGAAGCCTTGGTCCGCCTCGGAATTTTCTTGGAAAAGCATG
AGGTTCAGGAGGACACGGTGGACGTCTTGTCCTCCGCCGGCTGGCTCTGA back to top
|