mRNA_E-siliculosus-1a_F_contig10272.236.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10272.236.1
Unique NamemRNA_E-siliculosus-1a_F_contig10272.236.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: D7FS46_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS46_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.250e-64
Identity = 145/174 (83.33%), Postives = 146/174 (83.91%), Query Frame = 1 
Query:    1 ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVLGWGAAADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 522
            A  + GSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTC EAAVSFVLGWGAAADPNADGDDG XXXXXXXXXXX                      XXXXXXXXXXXXXXXXXXXXXXXX PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL
Sbjct:   16 AARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCLEAAVSFVLGWGAAADPNADGDDGNXXXXXXXXXXXDSTKGSKAEAGKKLFGRGDGSGXXXXXXXXXXXXXXXXXXXXXXXXEPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 189
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BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: A0A6H5JK77_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK77_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.840e-54
Identity = 165/174 (94.83%), Postives = 167/174 (95.98%), Query Frame = 1 
Query:    1 ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVLGWGAAADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 522
            A  + GSDKPLDADSLLPLLVHSLAHANLPRVHEAL+FLRNFQGAGWGGEQEYYVTC EAAVSFVL WGA ADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL
Sbjct:  955 AARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALSFLRNFQGAGWGGEQEYYVTCLEAAVSFVLDWGAVADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 1127
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BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: A0A7S2GUB1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUB1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.820e-11
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   22 DKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVL 198
            DKPLDAD + P+LV ++ H+ LP +H  + FLRNF  A   GE  Y++TC EAAVSFV+
Sbjct:  135 DKPLDADVMFPILVLAIVHSKLPHMHSYIFFLRNFAIADTTGEAAYFLTCCEAAVSFVM 193
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS46_ECTSI1.250e-6483.33VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JK77_9PHAE1.840e-5494.83VPS9 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2GUB1_9STRA2.820e-1154.24Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10272contigE-siliculosus-1a_F_contig10272:1198..2061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop1
Cds size525
Model size525
Exons2
Ec32 orthologEc-16_004390.1
Ec32 ortholog descriptionVacuolar sorting protein 9
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
COG Functional cat.S
EggNOG OGs29NWZ@1,2QTH6@2759
EggNOG free text desc.Vacuolar sorting protein 9 (VPS9) domain
Seed eggNOG ortholog2880.D7FS46
Seed ortholog evalue1.8e-50
Seed ortholog score205.7
Taxonomic scopeEukaryota
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.7085812-CDS-E-siliculosus-1a_F_contig10272:1197..15491622927530.7085812-CDS-E-siliculosus-1a_F_contig10272:1197..1549Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10272 1198..1549 -
1696318570.6984136-CDS-E-siliculosus-1a_F_contig10272:1197..15491696318570.6984136-CDS-E-siliculosus-1a_F_contig10272:1197..1549Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10272 1198..1549 -
1622927530.7240334-CDS-E-siliculosus-1a_F_contig10272:1888..20611622927530.7240334-CDS-E-siliculosus-1a_F_contig10272:1888..2061Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10272 1889..2061 -
1696318570.7084525-CDS-E-siliculosus-1a_F_contig10272:1888..20611696318570.7084525-CDS-E-siliculosus-1a_F_contig10272:1888..2061Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10272 1889..2061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10272.236.1prot_E-siliculosus-1a_F_contig10272.236.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10272 1198..2061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10272.236.1

>prot_E-siliculosus-1a_F_contig10272.236.1 ID=prot_E-siliculosus-1a_F_contig10272.236.1|Name=mRNA_E-siliculosus-1a_F_contig10272.236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp
ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGE
QEYYVTCFEAAVSFVLGWGAAADPNADGDDGNNNKKDDDNTTTDSAKGSK
AAAGKKLLGRGDDSGGSSSGNGASAAGRRAARRAGEEEEEPDKGREALVR
LGIFLEKHEVQEDTVDVLSSAGWL*
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mRNA from alignment at E-siliculosus-1a_F_contig10272:1198..2061-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10272.236.1 ID=mRNA_E-siliculosus-1a_F_contig10272.236.1|Name=mRNA_E-siliculosus-1a_F_contig10272.236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10272:1198..2061- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCTTGCCTTGCAGGGATCGGACAAGCCTTTAGACGCCGACAGCCTGTT
GCCTCTGCTCGTCCATTCCCTGGCGCACGCGAACCTCCCGCGAGTCCACG
AGGCGCTGAATTTTCTCAGAAATTTCCAGGGCGCTGGTTGGGGAGGGGAG
CAGGAGTACTACGTGACGTGCTTGTGAGTCGAGGTAGTCCTTTTGTTAGG
TGGGCGGTTCTGAGTGCTGCATCAATTTTGCGTCCAGGTGTAAACACATC
TTTTGCGCCAGCGCCTTGTTTAAGGGATACAACAGGGGGGGATTCTGCGG
CGTTCGTGTGGCGGGGTATCTACCTCGTTGTTTGAAGCTTCCGGCGGGGG
GTGACGGCTCCGTGTCGGTCGCTTTCGATCTCTACTTTTCGTCTCGTATG
TGGGAAAACGCCCCCCTTCCCGTATGCATATGCCACCGCGAAGGCACTTG
TAACCGCCCCCACCCCCCCTCCGCCGCTCATTCTTCTCCCCCCCCCCCTC
CCCTTTCGATAGCGAGGCCGCGGTTTCTTTCGTGCTAGGCTGGGGGGCTG
CTGCCGACCCCAACGCCGACGGGGATGACGGCAATAACAACAAGAAGGAT
GACGACAATACCACCACCGACAGCGCCAAAGGGTCGAAGGCGGCGGCGGG
GAAGAAACTACTTGGTCGAGGGGATGACAGTGGCGGTAGCAGCAGCGGTA
ACGGTGCATCGGCTGCAGGAAGACGGGCGGCGCGGCGGGCGGGAGAAGAG
GAGGAAGAGCCGGACAAGGGGCGGGAAGCCTTGGTCCGCCTCGGAATTTT
CTTGGAAAAGCATGAGGTTCAGGAGGACACGGTGGACGTCTTGTCCTCCG
CCGGCTGGCTCTGA
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10272:1198..2061-

>mRNA_E-siliculosus-1a_F_contig10272.236.1 ID=mRNA_E-siliculosus-1a_F_contig10272.236.1|Name=mRNA_E-siliculosus-1a_F_contig10272.236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10272:1198..2061- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCTTGCCTTGCAGGGATCGGACAAGCCTTTAGACGCCGACAGCCTGTT
GCCTCTGCTCGTCCATTCCCTGGCGCACGCGAACCTCCCGCGAGTCCACG
AGGCGCTGAATTTTCTCAGAAATTTCCAGGGCGCTGGTTGGGGAGGGGAG
CAGGAGTACTACGTGACGTGCTTGCTCTTGCCTTGCAGGGATCGGACAAG
CCTTTAGACGCCGACAGCCTGTTGCCTCTGCTCGTCCATTCCCTGGCGCA
CGCGAACCTCCCGCGAGTCCACGAGGCGCTGAATTTTCTCAGAAATTTCC
AGGGCGCTGGTTGGGGAGGGGAGCAGGAGTACTACGTGACGTGCTTCGAG
GCCGCGGTTTCTTTCGTGCTAGGCTGGGGGGCTGCTGCCGACCCCAACGC
CGACGGGGATGACGGCAATAACAACAAGAAGGATGACGACAATACCACCA
CCGACAGCGCCAAAGGGTCGAAGGCGGCGGCGGGGAAGAAACTACTTGGT
CGAGGGGATGACAGTGGCGGTAGCAGCAGCGGTAACGGTGCATCGGCTGC
AGGAAGACGGGCGGCGCGGCGGGCGGGAGAAGAGGAGGAAGAGCCGGACA
AGGGGCGGGAAGCCTTGGTCCGCCTCGGAATTTTCTTGGAAAAGCATGAG
GTTCAGGAGGACACGGTGGACGTCTTGTCCTCCGCCGGCTGGCTCTGACG
AGGCCGCGGTTTCTTTCGTGCTAGGCTGGGGGGCTGCTGCCGACCCCAAC
GCCGACGGGGATGACGGCAATAACAACAAGAAGGATGACGACAATACCAC
CACCGACAGCGCCAAAGGGTCGAAGGCGGCGGCGGGGAAGAAACTACTTG
GTCGAGGGGATGACAGTGGCGGTAGCAGCAGCGGTAACGGTGCATCGGCT
GCAGGAAGACGGGCGGCGCGGCGGGCGGGAGAAGAGGAGGAAGAGCCGGA
CAAGGGGCGGGAAGCCTTGGTCCGCCTCGGAATTTTCTTGGAAAAGCATG
AGGTTCAGGAGGACACGGTGGACGTCTTGTCCTCCGCCGGCTGGCTCTGA
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