mRNA_E-siliculosus-1a_F_contig10272.236.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Homology

BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: D7FS46_ECTSI (VPS9 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS46_ECTSI)

HSP 1 Score: 205 bits (522), Expect = 1.250e-64
Identity = 145/174 (83.33%), Postives = 146/174 (83.91%), Query Frame = 1

Query:    1 ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVLGWGAAADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 522
            A  + GSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTC EAAVSFVLGWGAAADPNADGDDG XXXXXXXXXXX                      XXXXXXXXXXXXXXXXXXXXXXXX PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL
Sbjct:   16 AARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCLEAAVSFVLGWGAAADPNADGDDGNXXXXXXXXXXXDSTKGSKAEAGKKLFGRGDGSGXXXXXXXXXXXXXXXXXXXXXXXXEPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 189

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BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: A0A6H5JK77_9PHAE (VPS9 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK77_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 1.840e-54
Identity = 165/174 (94.83%), Postives = 167/174 (95.98%), Query Frame = 1

Query:    1 ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVLGWGAAADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 522
            A  + GSDKPLDADSLLPLLVHSLAHANLPRVHEAL+FLRNFQGAGWGGEQEYYVTC EAAVSFVL WGA ADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL
Sbjct:  955 AARISGSDKPLDADSLLPLLVHSLAHANLPRVHEALSFLRNFQGAGWGGEQEYYVTCLEAAVSFVLDWGAVADPNADGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-PDKGREALVRLGIFLEKHEVQEDTVDVLSSAGWL 1127

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BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Match: A0A7S2GUB1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUB1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.820e-11
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1

Query:   22 DKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGEQEYYVTCFEAAVSFVL 198
            DKPLDAD + P+LV ++ H+ LP +H  + FLRNF  A   GE  Y++TC EAAVSFV+
Sbjct:  135 DKPLDADVMFPILVLAIVHSKLPHMHSYIFFLRNFAIADTTGEAAYFLTCCEAAVSFVM 193

The following BLAST results are available for this feature:

BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot

BLAST of mRNA_E-siliculosus-1a_F_contig10272.236.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 3

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POSITION

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Match Name	E-value	Identity	Description
D7FS46_ECTSI	1.250e-64	83.33	VPS9 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A6H5JK77_9PHAE	1.840e-54	94.83	VPS9 domain-containing protein n=1 Tax=Ectocarpus ...	[more]
A0A7S2GUB1_9STRA	2.820e-11	54.24	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]

Properties


Property Name	Value
Start	0
Stop	1
Cds size	525
Model size	525
Exons	2
Ec32 ortholog	Ec-16_004390.1
Ec32 ortholog description	Vacuolar sorting protein 9
Hectar predicted targeting category	other localisation
Best eggNOG OG	NA\|NA\|NA
Best tax level	Eukaryota
COG Functional cat.	S
EggNOG OGs	29NWZ@1,2QTH6@2759
EggNOG free text desc.	Vacuolar sorting protein 9 (VPS9) domain
Seed eggNOG ortholog	2880.D7FS46
Seed ortholog evalue	1.8e-50
Seed ortholog score	205.7
Taxonomic scope	Eukaryota

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-siliculosus-1a_F_contig10272:1198..2061-
coding sequence from alignment at E-siliculosus-1a_F_contig10272:1198..2061-

protein sequence of mRNA_E-siliculosus-1a_F_contig10272.236.1

>prot_E-siliculosus-1a_F_contig10272.236.1 ID=prot_E-siliculosus-1a_F_contig10272.236.1|Name=mRNA_E-siliculosus-1a_F_contig10272.236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=175bp
ALALQGSDKPLDADSLLPLLVHSLAHANLPRVHEALNFLRNFQGAGWGGE
QEYYVTCFEAAVSFVLGWGAAADPNADGDDGNNNKKDDDNTTTDSAKGSK
AAAGKKLLGRGDDSGGSSSGNGASAAGRRAARRAGEEEEEPDKGREALVR
LGIFLEKHEVQEDTVDVLSSAGWL*

mRNA from alignment at E-siliculosus-1a_F_contig10272:1198..2061-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-siliculosus-1a_F_contig10272.236.1 ID=mRNA_E-siliculosus-1a_F_contig10272.236.1|Name=mRNA_E-siliculosus-1a_F_contig10272.236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=864bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10272:1198..2061- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCTTGCCTTGCAGGGATCGGACAAGCCTTTAGACGCCGACAGCCTGTT
GCCTCTGCTCGTCCATTCCCTGGCGCACGCGAACCTCCCGCGAGTCCACG
AGGCGCTGAATTTTCTCAGAAATTTCCAGGGCGCTGGTTGGGGAGGGGAG
CAGGAGTACTACGTGACGTGCTTGTGAGTCGAGGTAGTCCTTTTGTTAGG
TGGGCGGTTCTGAGTGCTGCATCAATTTTGCGTCCAGGTGTAAACACATC
TTTTGCGCCAGCGCCTTGTTTAAGGGATACAACAGGGGGGGATTCTGCGG
CGTTCGTGTGGCGGGGTATCTACCTCGTTGTTTGAAGCTTCCGGCGGGGG
GTGACGGCTCCGTGTCGGTCGCTTTCGATCTCTACTTTTCGTCTCGTATG
TGGGAAAACGCCCCCCTTCCCGTATGCATATGCCACCGCGAAGGCACTTG
TAACCGCCCCCACCCCCCCTCCGCCGCTCATTCTTCTCCCCCCCCCCCTC
CCCTTTCGATAGCGAGGCCGCGGTTTCTTTCGTGCTAGGCTGGGGGGCTG
CTGCCGACCCCAACGCCGACGGGGATGACGGCAATAACAACAAGAAGGAT
GACGACAATACCACCACCGACAGCGCCAAAGGGTCGAAGGCGGCGGCGGG
GAAGAAACTACTTGGTCGAGGGGATGACAGTGGCGGTAGCAGCAGCGGTA
ACGGTGCATCGGCTGCAGGAAGACGGGCGGCGCGGCGGGCGGGAGAAGAG
GAGGAAGAGCCGGACAAGGGGCGGGAAGCCTTGGTCCGCCTCGGAATTTT
CTTGGAAAAGCATGAGGTTCAGGAGGACACGGTGGACGTCTTGTCCTCCG
CCGGCTGGCTCTGA

Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10272:1198..2061-

>mRNA_E-siliculosus-1a_F_contig10272.236.1 ID=mRNA_E-siliculosus-1a_F_contig10272.236.1|Name=mRNA_E-siliculosus-1a_F_contig10272.236.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1050bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10272:1198..2061- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GCTCTTGCCTTGCAGGGATCGGACAAGCCTTTAGACGCCGACAGCCTGTT
GCCTCTGCTCGTCCATTCCCTGGCGCACGCGAACCTCCCGCGAGTCCACG
AGGCGCTGAATTTTCTCAGAAATTTCCAGGGCGCTGGTTGGGGAGGGGAG
CAGGAGTACTACGTGACGTGCTTGCTCTTGCCTTGCAGGGATCGGACAAG
CCTTTAGACGCCGACAGCCTGTTGCCTCTGCTCGTCCATTCCCTGGCGCA
CGCGAACCTCCCGCGAGTCCACGAGGCGCTGAATTTTCTCAGAAATTTCC
AGGGCGCTGGTTGGGGAGGGGAGCAGGAGTACTACGTGACGTGCTTCGAG
GCCGCGGTTTCTTTCGTGCTAGGCTGGGGGGCTGCTGCCGACCCCAACGC
CGACGGGGATGACGGCAATAACAACAAGAAGGATGACGACAATACCACCA
CCGACAGCGCCAAAGGGTCGAAGGCGGCGGCGGGGAAGAAACTACTTGGT
CGAGGGGATGACAGTGGCGGTAGCAGCAGCGGTAACGGTGCATCGGCTGC
AGGAAGACGGGCGGCGCGGCGGGCGGGAGAAGAGGAGGAAGAGCCGGACA
AGGGGCGGGAAGCCTTGGTCCGCCTCGGAATTTTCTTGGAAAAGCATGAG
GTTCAGGAGGACACGGTGGACGTCTTGTCCTCCGCCGGCTGGCTCTGACG
AGGCCGCGGTTTCTTTCGTGCTAGGCTGGGGGGCTGCTGCCGACCCCAAC
GCCGACGGGGATGACGGCAATAACAACAAGAAGGATGACGACAATACCAC
CACCGACAGCGCCAAAGGGTCGAAGGCGGCGGCGGGGAAGAAACTACTTG
GTCGAGGGGATGACAGTGGCGGTAGCAGCAGCGGTAACGGTGCATCGGCT
GCAGGAAGACGGGCGGCGCGGCGGGCGGGAGAAGAGGAGGAAGAGCCGGA
CAAGGGGCGGGAAGCCTTGGTCCGCCTCGGAATTTTCTTGGAAAAGCATG
AGGTTCAGGAGGACACGGTGGACGTCTTGTCCTCCGCCGGCTGGCTCTGA