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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig10270.235.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI) HSP 1 Score: 273 bits (699), Expect = 2.830e-82 Identity = 149/151 (98.68%), Postives = 149/151 (98.68%), Query Frame = 1 Query: 1 GEGLDTSSATTGGGXGEGESAKSRPLSPRSDFMASRVRLCSAGSDVTIGTDASRNLHDSGSTSTTAVLTNFAEVTACTANFCFKLDAVSAPGIPEVERQRMEEKLERYQFKLRIAERKGRETKVAKMHKKIDRMRRQLAGETLGSGDEGEE 453
GEGLDTSSATTGG XGEGESAKSRP SPRSDFMASRVRLCSAGSDVTIGTDASRNLHDSGSTSTTAVLTNFAEVTACTANFCFKLDAVSAPGIPEVERQRMEEKLERYQFKLRIAERKGRETKVAKMHKKIDRMRRQLAGETLGSGDEGEE
Sbjct: 1545 GEGLDTSSATTGGXXGEGESAKSRPFSPRSDFMASRVRLCSAGSDVTIGTDASRNLHDSGSTSTTAVLTNFAEVTACTANFCFKLDAVSAPGIPEVERQRMEEKLERYQFKLRIAERKGRETKVAKMHKKIDRMRRQLAGETLGSGDEGEE 1695
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 0 |
| Stop | 0 |
| Cds size | 453 |
| Model size | 453 |
| Exons | 4 |
| Hectar predicted targeting category | other localisation |
| Best eggNOG OG | NA|NA|NA |
| Best tax level | Eukaryota |
| EggNOG OGs | 28MMI@1,2QU5A@2759 |
| Seed eggNOG ortholog | 2880.D8LHH6 |
| Seed ortholog evalue | 2.7e-71 |
| Seed ortholog score | 274.6 |
| Taxonomic scope | Eukaryota |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig10270.235.1 >prot_E-siliculosus-1a_F_contig10270.235.1 ID=prot_E-siliculosus-1a_F_contig10270.235.1|Name=mRNA_E-siliculosus-1a_F_contig10270.235.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=151bp
GEGLDTSSATTGGGGGEGESAKSRPLSPRSDFMASRVRLCSAGSDVTIGT
DASRNLHDSGSTSTTAVLTNFAEVTACTANFCFKLDAVSAPGIPEVERQR
MEEKLERYQFKLRIAERKGRETKVAKMHKKIDRMRRQLAGETLGSGDEGE
E back to topmRNA from alignment at E-siliculosus-1a_F_contig10270:120..2292- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig10270.235.1 ID=mRNA_E-siliculosus-1a_F_contig10270.235.1|Name=mRNA_E-siliculosus-1a_F_contig10270.235.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2173bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10270:120..2292- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGAGGGGTTGGACACCTCGTCGGCGACAACCGGCGGGGGCGGGGGCGA
GGGGGAGTCTGCTAAGGTGCGGAGCGGCGGCGAAACCAATCAAATTGTCG
ACTCCATTCTTGTGCGATTCAAATCACGGGCGGGAGACTTCGGCTCGATT
GGGATTTATATGTAAATTTACGGATTGTCGTCAATGCGCACGCGAAAGTT
TCAATTTGTCGAAACCTCAATAACATTCATGATCACGTACACAAAGCATG
TTGGATATTTAGCTAGCAGGCGGCATCGAAGGTGTCGTTTGACCACGCCG
CTTGTCTTCACGCCCTCTTCTCGTGCCCGTCCGACAGTCGAGGCCGCTCA
GCCCACGGTCTGACTTCATGGCCTCTCGCGTCAGGCTGTGCAGCGCGGGG
TCTGACGTGACCATCGGGACCGACGCAAGCCGTAACCTTCACGACTCGGG
ATCGACGTCCACGACGGCAGTGCTCACCAACTTTGCGGAGGTCAGTCGTC
GTCATCGTCGTCACAAGAAACCGATACAGATGTTAAACACCAGCTGGCAT
CACTGATGAAAAACATGAGCCGTTTTTTTCTGCCACTCGTCCCTAGAAGC
AAAAGGCTACACACAAGTTGTGTGAAAATAGCTCAGCCGGTTTTTCTGCC
ACTCGTACAAGATACCTACAGATGCATGTGTGAAGAGCACCAGCTGGCAT
CACAAACACTACCAGGAATTCAGTGTGTATGGGCTATTGTTGGACTCGAA
ATATCCAGCCGGTTTTTCCGCACCTCACTGCCGTAAAGAATTCAACACAC
ATGCCCTTCGACTGTGGTCATATATCGGACTGGTACACGTAGTCTTGTGT
GATTGTATGTGTAAGTAGTTGGGGTTGGCCGGGCGTGCCGAAGGGGTTCC
GCGGGCTGGGGTGGGGGGCGGCTCGCACAAGTGGCGTGCGAGTATTGCAT
GGATGCGCGTGCGTGGTGGTGTCGATGTTGCGTGTGATGCTCTAAATCGT
GGTTTCAAGGCAAGACCTTCTCGTCAACATGGGGCGTCAGGGTTTGGTTC
TCAACCGCGCCACTGCTGTTTCGCATTGTGGTTGGGTTCTCAACTGTGCC
ACTGCTGTTTTCGCTTTGTAGTCGGGCTCGTGATCTTGGCTGATGCGCCC
CATTCCGTCCTCCTCTATCCTACGCTGTTGGGTGGCCTACGCTTCTGTTG
CTGTCGGGTTCGCTCTCTGCTGCCTCCTGTGTCTCACTACCGCTGTACTG
CTGTGGTCGATTGTCTGGGCTCTCTTTTGTTGCTATGCGTATGATAGGTC
ACAGCCTGCACCGCGAACTTCTGCTTCAAGCTGGACGCCGTTTCCGCTCC
CGGCATCCCAGAGGTGGAGCGTCAACGCATGGAGGTAGGTGTCTCCCTCT
GCAGGCCCACCCCCTGTGTAACCCGAACATACCCACGGCTTGACGGGGAG
GATGCTTACCAACGCGCGGGAGAAGATCGCACCGCTCTCTCTCTCTCTCT
CTCTCGACCATGATCTTCGAAAAGTTTCGAAACGATCGCAGTTCCACTTT
TCCTGCGGAAAAACATGTTGTCGTGCTTAGCACCGGCTGGCATCACTGTT
TTAATGTCAGTGTACAGGCTTAGATAAGACTCCAAATATGCCCAGTATCC
GGCAGATTTTCTCCCTTGTTCACTATAAAGAGTTCAACCCATCCCCTTTG
ACTGTGGTTATGTCTCGAACAGGTTGTCTTTCTCTGATTGTATGCTTACT
TTCGAAAACATCTCCTGATCGGTGACTGTTCATTTCCGAGTCGGCGGGAT
GGGACAACGCGCGCTCCCGGTGAAAGGGCCACGGGGGTTGGAGCGATGTC
TTGCTGCTGTGAAACGTTTACCAGATAAGCATGGCGACTGCGTGTTTTTT
GAAACTCGCAAGAGATTCGTCGGGGGGCTGGCTTTCACACGTTTTCCGGG
GAGGTTTTGGTGCTGTGCCTACTGCTGTCCTTCCCTTTCTCACCGCCGAT
GCCGCTGGGCCTGGTTCGCTTGCCAGGAAAAACTGGAGCGCTACCAGTTC
AAGCTTCGCATCGCGGAGCGCAAAGGGCGAGAGACCAAGGTGGCCAAGAT
GCACAAGAAGATAGACCGGATGCGGCGGCAGCTAGCCGGCGAGACTCTCG
GGAGCGGGGACGAAGGGGAGGAG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10270:120..2292- >mRNA_E-siliculosus-1a_F_contig10270.235.1 ID=mRNA_E-siliculosus-1a_F_contig10270.235.1|Name=mRNA_E-siliculosus-1a_F_contig10270.235.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10270:120..2292- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGAGGGGTTGGACACCTCGTCGGCGACAACCGGCGGGGGCGGGGGCGA
GGGGGAGTCTGCTAAGGGCGAGGGGTTGGACACCTCGTCGGCGACAACCG
GCGGGGGCGGGGGCGAGGGGGAGTCTGCTAAGTCGAGGCCGCTCAGCCCA
CGGTCTGACTTCATGGCCTCTCGCGTCAGGCTGTGCAGCGCGGGGTCTGA
CGTGACCATCGGGACCGACGCAAGCCGTAACCTTCACGACTCGGGATCGA
CGTCCACGACGGCAGTGCTCACCAACTTTGCGGAGTCGAGGCCGCTCAGC
CCACGGTCTGACTTCATGGCCTCTCGCGTCAGGCTGTGCAGCGCGGGGTC
TGACGTGACCATCGGGACCGACGCAAGCCGTAACCTTCACGACTCGGGAT
CGACGTCCACGACGGCAGTGCTCACCAACTTTGCGGAGGTCACAGCCTGC
ACCGCGAACTTCTGCTTCAAGCTGGACGCCGTTTCCGCTCCCGGCATCCC
AGAGGTGGAGCGTCAACGCATGGAGGTCACAGCCTGCACCGCGAACTTCT
GCTTCAAGCTGGACGCCGTTTCCGCTCCCGGCATCCCAGAGGTGGAGCGT
CAACGCATGGAGGAAAAACTGGAGCGCTACCAGTTCAAGCTTCGCATCGC
GGAGCGCAAAGGGCGAGAGACCAAGGTGGCCAAGATGCACAAGAAGATAG
ACCGGATGCGGCGGCAGCTAGCCGGCGAGACTCTCGGGAGCGGGGACGAA
GGGGAGGAGGAAAAACTGGAGCGCTACCAGTTCAAGCTTCGCATCGCGGA
GCGCAAAGGGCGAGAGACCAAGGTGGCCAAGATGCACAAGAAGATAGACC
GGATGCGGCGGCAGCTAGCCGGCGAGACTCTCGGGAGCGGGGACGAAGGG
GAGGAG back to top
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