mRNA_E-siliculosus-1a_F_contig10270.235.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10270.235.1
Unique NamemRNA_E-siliculosus-1a_F_contig10270.235.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10270.235.1 vs. uniprot
Match: D8LHH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHH6_ECTSI)

HSP 1 Score: 273 bits (699), Expect = 2.830e-82
Identity = 149/151 (98.68%), Postives = 149/151 (98.68%), Query Frame = 1 
Query:    1 GEGLDTSSATTGGGXGEGESAKSRPLSPRSDFMASRVRLCSAGSDVTIGTDASRNLHDSGSTSTTAVLTNFAEVTACTANFCFKLDAVSAPGIPEVERQRMEEKLERYQFKLRIAERKGRETKVAKMHKKIDRMRRQLAGETLGSGDEGEE 453
            GEGLDTSSATTGG XGEGESAKSRP SPRSDFMASRVRLCSAGSDVTIGTDASRNLHDSGSTSTTAVLTNFAEVTACTANFCFKLDAVSAPGIPEVERQRMEEKLERYQFKLRIAERKGRETKVAKMHKKIDRMRRQLAGETLGSGDEGEE
Sbjct: 1545 GEGLDTSSATTGGXXGEGESAKSRPFSPRSDFMASRVRLCSAGSDVTIGTDASRNLHDSGSTSTTAVLTNFAEVTACTANFCFKLDAVSAPGIPEVERQRMEEKLERYQFKLRIAERKGRETKVAKMHKKIDRMRRQLAGETLGSGDEGEE 1695
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10270.235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHH6_ECTSI2.830e-8298.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10270contigE-siliculosus-1a_F_contig10270:120..2292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size453
Model size453
Exons4
Hectar predicted targeting categoryother localisation
Best eggNOG OGNA|NA|NA
Best tax levelEukaryota
EggNOG OGs28MMI@1,2QU5A@2759
Seed eggNOG ortholog2880.D8LHH6
Seed ortholog evalue2.7e-71
Seed ortholog score274.6
Taxonomic scopeEukaryota
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10270.235.1prot_E-siliculosus-1a_F_contig10270.235.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10270 120..2292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927530.6075993-CDS-E-siliculosus-1a_F_contig10270:119..2661622927530.6075993-CDS-E-siliculosus-1a_F_contig10270:119..266Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10270 120..266 -
1696318570.6595526-CDS-E-siliculosus-1a_F_contig10270:119..2661696318570.6595526-CDS-E-siliculosus-1a_F_contig10270:119..266Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10270 120..266 -
1622927530.6241746-CDS-E-siliculosus-1a_F_contig10270:908..9951622927530.6241746-CDS-E-siliculosus-1a_F_contig10270:908..995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10270 909..995 -
1696318570.670719-CDS-E-siliculosus-1a_F_contig10270:908..9951696318570.670719-CDS-E-siliculosus-1a_F_contig10270:908..995Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10270 909..995 -
1622927530.6377716-CDS-E-siliculosus-1a_F_contig10270:1802..19551622927530.6377716-CDS-E-siliculosus-1a_F_contig10270:1802..1955Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10270 1803..1955 -
1696318570.6825328-CDS-E-siliculosus-1a_F_contig10270:1802..19551696318570.6825328-CDS-E-siliculosus-1a_F_contig10270:1802..1955Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10270 1803..1955 -
1622927530.6547048-CDS-E-siliculosus-1a_F_contig10270:2226..22921622927530.6547048-CDS-E-siliculosus-1a_F_contig10270:2226..2292Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10270 2227..2292 -
1696318570.6902235-CDS-E-siliculosus-1a_F_contig10270:2226..22921696318570.6902235-CDS-E-siliculosus-1a_F_contig10270:2226..2292Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10270 2227..2292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10270.235.1

>prot_E-siliculosus-1a_F_contig10270.235.1 ID=prot_E-siliculosus-1a_F_contig10270.235.1|Name=mRNA_E-siliculosus-1a_F_contig10270.235.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=151bp
GEGLDTSSATTGGGGGEGESAKSRPLSPRSDFMASRVRLCSAGSDVTIGT
DASRNLHDSGSTSTTAVLTNFAEVTACTANFCFKLDAVSAPGIPEVERQR
MEEKLERYQFKLRIAERKGRETKVAKMHKKIDRMRRQLAGETLGSGDEGE
E
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mRNA from alignment at E-siliculosus-1a_F_contig10270:120..2292-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10270.235.1 ID=mRNA_E-siliculosus-1a_F_contig10270.235.1|Name=mRNA_E-siliculosus-1a_F_contig10270.235.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=2173bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10270:120..2292- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGAGGGGTTGGACACCTCGTCGGCGACAACCGGCGGGGGCGGGGGCGA
GGGGGAGTCTGCTAAGGTGCGGAGCGGCGGCGAAACCAATCAAATTGTCG
ACTCCATTCTTGTGCGATTCAAATCACGGGCGGGAGACTTCGGCTCGATT
GGGATTTATATGTAAATTTACGGATTGTCGTCAATGCGCACGCGAAAGTT
TCAATTTGTCGAAACCTCAATAACATTCATGATCACGTACACAAAGCATG
TTGGATATTTAGCTAGCAGGCGGCATCGAAGGTGTCGTTTGACCACGCCG
CTTGTCTTCACGCCCTCTTCTCGTGCCCGTCCGACAGTCGAGGCCGCTCA
GCCCACGGTCTGACTTCATGGCCTCTCGCGTCAGGCTGTGCAGCGCGGGG
TCTGACGTGACCATCGGGACCGACGCAAGCCGTAACCTTCACGACTCGGG
ATCGACGTCCACGACGGCAGTGCTCACCAACTTTGCGGAGGTCAGTCGTC
GTCATCGTCGTCACAAGAAACCGATACAGATGTTAAACACCAGCTGGCAT
CACTGATGAAAAACATGAGCCGTTTTTTTCTGCCACTCGTCCCTAGAAGC
AAAAGGCTACACACAAGTTGTGTGAAAATAGCTCAGCCGGTTTTTCTGCC
ACTCGTACAAGATACCTACAGATGCATGTGTGAAGAGCACCAGCTGGCAT
CACAAACACTACCAGGAATTCAGTGTGTATGGGCTATTGTTGGACTCGAA
ATATCCAGCCGGTTTTTCCGCACCTCACTGCCGTAAAGAATTCAACACAC
ATGCCCTTCGACTGTGGTCATATATCGGACTGGTACACGTAGTCTTGTGT
GATTGTATGTGTAAGTAGTTGGGGTTGGCCGGGCGTGCCGAAGGGGTTCC
GCGGGCTGGGGTGGGGGGCGGCTCGCACAAGTGGCGTGCGAGTATTGCAT
GGATGCGCGTGCGTGGTGGTGTCGATGTTGCGTGTGATGCTCTAAATCGT
GGTTTCAAGGCAAGACCTTCTCGTCAACATGGGGCGTCAGGGTTTGGTTC
TCAACCGCGCCACTGCTGTTTCGCATTGTGGTTGGGTTCTCAACTGTGCC
ACTGCTGTTTTCGCTTTGTAGTCGGGCTCGTGATCTTGGCTGATGCGCCC
CATTCCGTCCTCCTCTATCCTACGCTGTTGGGTGGCCTACGCTTCTGTTG
CTGTCGGGTTCGCTCTCTGCTGCCTCCTGTGTCTCACTACCGCTGTACTG
CTGTGGTCGATTGTCTGGGCTCTCTTTTGTTGCTATGCGTATGATAGGTC
ACAGCCTGCACCGCGAACTTCTGCTTCAAGCTGGACGCCGTTTCCGCTCC
CGGCATCCCAGAGGTGGAGCGTCAACGCATGGAGGTAGGTGTCTCCCTCT
GCAGGCCCACCCCCTGTGTAACCCGAACATACCCACGGCTTGACGGGGAG
GATGCTTACCAACGCGCGGGAGAAGATCGCACCGCTCTCTCTCTCTCTCT
CTCTCGACCATGATCTTCGAAAAGTTTCGAAACGATCGCAGTTCCACTTT
TCCTGCGGAAAAACATGTTGTCGTGCTTAGCACCGGCTGGCATCACTGTT
TTAATGTCAGTGTACAGGCTTAGATAAGACTCCAAATATGCCCAGTATCC
GGCAGATTTTCTCCCTTGTTCACTATAAAGAGTTCAACCCATCCCCTTTG
ACTGTGGTTATGTCTCGAACAGGTTGTCTTTCTCTGATTGTATGCTTACT
TTCGAAAACATCTCCTGATCGGTGACTGTTCATTTCCGAGTCGGCGGGAT
GGGACAACGCGCGCTCCCGGTGAAAGGGCCACGGGGGTTGGAGCGATGTC
TTGCTGCTGTGAAACGTTTACCAGATAAGCATGGCGACTGCGTGTTTTTT
GAAACTCGCAAGAGATTCGTCGGGGGGCTGGCTTTCACACGTTTTCCGGG
GAGGTTTTGGTGCTGTGCCTACTGCTGTCCTTCCCTTTCTCACCGCCGAT
GCCGCTGGGCCTGGTTCGCTTGCCAGGAAAAACTGGAGCGCTACCAGTTC
AAGCTTCGCATCGCGGAGCGCAAAGGGCGAGAGACCAAGGTGGCCAAGAT
GCACAAGAAGATAGACCGGATGCGGCGGCAGCTAGCCGGCGAGACTCTCG
GGAGCGGGGACGAAGGGGAGGAG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10270:120..2292-

>mRNA_E-siliculosus-1a_F_contig10270.235.1 ID=mRNA_E-siliculosus-1a_F_contig10270.235.1|Name=mRNA_E-siliculosus-1a_F_contig10270.235.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=906bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10270:120..2292- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GGCGAGGGGTTGGACACCTCGTCGGCGACAACCGGCGGGGGCGGGGGCGA
GGGGGAGTCTGCTAAGGGCGAGGGGTTGGACACCTCGTCGGCGACAACCG
GCGGGGGCGGGGGCGAGGGGGAGTCTGCTAAGTCGAGGCCGCTCAGCCCA
CGGTCTGACTTCATGGCCTCTCGCGTCAGGCTGTGCAGCGCGGGGTCTGA
CGTGACCATCGGGACCGACGCAAGCCGTAACCTTCACGACTCGGGATCGA
CGTCCACGACGGCAGTGCTCACCAACTTTGCGGAGTCGAGGCCGCTCAGC
CCACGGTCTGACTTCATGGCCTCTCGCGTCAGGCTGTGCAGCGCGGGGTC
TGACGTGACCATCGGGACCGACGCAAGCCGTAACCTTCACGACTCGGGAT
CGACGTCCACGACGGCAGTGCTCACCAACTTTGCGGAGGTCACAGCCTGC
ACCGCGAACTTCTGCTTCAAGCTGGACGCCGTTTCCGCTCCCGGCATCCC
AGAGGTGGAGCGTCAACGCATGGAGGTCACAGCCTGCACCGCGAACTTCT
GCTTCAAGCTGGACGCCGTTTCCGCTCCCGGCATCCCAGAGGTGGAGCGT
CAACGCATGGAGGAAAAACTGGAGCGCTACCAGTTCAAGCTTCGCATCGC
GGAGCGCAAAGGGCGAGAGACCAAGGTGGCCAAGATGCACAAGAAGATAG
ACCGGATGCGGCGGCAGCTAGCCGGCGAGACTCTCGGGAGCGGGGACGAA
GGGGAGGAGGAAAAACTGGAGCGCTACCAGTTCAAGCTTCGCATCGCGGA
GCGCAAAGGGCGAGAGACCAAGGTGGCCAAGATGCACAAGAAGATAGACC
GGATGCGGCGGCAGCTAGCCGGCGAGACTCTCGGGAGCGGGGACGAAGGG
GAGGAG
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