Homology
BLAST of mRNA_E-siliculosus-1a_F_contig1026.227.1 vs. uniprot
Match: D7FNB4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNB4_ECTSI) HSP 1 Score: 358 bits (918), Expect = 9.640e-121 Identity = 183/190 (96.32%), Postives = 184/190 (96.84%), Query Frame = 1 Query: 1 MPAATAHKVSASNHKLYHEALRFTTIYVYLDVAYATLLLAAALHLSGVPVGLILGLDVPLKKSEAGGEGGLVRSGALSLATAGVMGLLVGVMVRGCCRLDKSQGCVVTNWHDLLKYTHMGRTITAAMCGVLTWRGLGSLKDFHAPEGGIGLVPAVLITAAVLSLAAAASMNFLHFRMKGVLTEYAKLKRT 570
MPAATAHKVSASNHKLYHEALRFTTIYVYLDVAYATLLLAAALHLSGVPVGLILGLDVPLKKSEAGGEGGLVRSGALSLATAGVMGLLVGVMVRGCCR DKS GCVVTNWHDLLKYTHMGRTITAAMC VLTWRGLGSLKDF PEGG+GLVPAVLI AAVLSLAAAASMNFLHFRMKGVLTEYAKLKRT
Sbjct: 1 MPAATAHKVSASNHKLYHEALRFTTIYVYLDVAYATLLLAAALHLSGVPVGLILGLDVPLKKSEAGGEGGLVRSGALSLATAGVMGLLVGVMVRGCCRFDKSHGCVVTNWHDLLKYTHMGRTITAAMCAVLTWRGLGSLKDFQIPEGGVGLVPAVLIAAAVLSLAAAASMNFLHFRMKGVLTEYAKLKRT 190
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 573 |
| Model size | 1292 |
| Exons | 4 |
| Ec32 ortholog | Ec-24_000130.1 |
| Ec32 ortholog description | hypothetical protein |
| Hectar predicted targeting category | other localisation |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927529.4769125-UTR-E-siliculosus-1a_F_contig1026:21002..21721 | 1622927529.4769125-UTR-E-siliculosus-1a_F_contig1026:21002..21721 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1026 21003..21721 - |
| 1696318570.0073245-UTR-E-siliculosus-1a_F_contig1026:21002..21721 | 1696318570.0073245-UTR-E-siliculosus-1a_F_contig1026:21002..21721 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig1026 21003..21721 - |
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig1026.227.1 >prot_E-siliculosus-1a_F_contig1026.227.1 ID=prot_E-siliculosus-1a_F_contig1026.227.1|Name=mRNA_E-siliculosus-1a_F_contig1026.227.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=191bp
MPAATAHKVSASNHKLYHEALRFTTIYVYLDVAYATLLLAAALHLSGVPV
GLILGLDVPLKKSEAGGEGGLVRSGALSLATAGVMGLLVGVMVRGCCRLD
KSQGCVVTNWHDLLKYTHMGRTITAAMCGVLTWRGLGSLKDFHAPEGGIG
LVPAVLITAAVLSLAAAASMNFLHFRMKGVLTEYAKLKRT* back to topmRNA from alignment at E-siliculosus-1a_F_contig1026:21003..24821- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig1026.227.1 ID=mRNA_E-siliculosus-1a_F_contig1026.227.1|Name=mRNA_E-siliculosus-1a_F_contig1026.227.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3819bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1026:21003..24821- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCGCAGCAACAGCTCACAAGGTGTCTGCCTCTAACCACAAGCTGTA
CCACGAGGCCCTCAGGTTCACGACCATCTACGTCTACTTGGACGTAGCGT
ACGCGACGCTGCTCTTGGCGGCAGCGCTGCACCTCAGTGGGGTGCCTGTG
GGTCTGATCCTGGGGCTAGATGTGCCGCTCAAGAAGTCAGAGGCTGGGGG
GGAAGGGGGGTTGGTGCGATCGGGGGCCCTGAGCTTAGCCACTGCCGGGG
TGATGGGTCTCCTGGTTGGTGTTATGGTGAGCCTCCCTCCGAGTACAGCG
GCACACAGCGCACGAAGTACTGCGGTACTGCCTCGAGTGTTCCCACAACC
ACCTCTCTCTCGTTGTCGTGTTAACCCTAACCCTAACCCTAGCCCTTAGC
GTCGCACCTTCTCGTAGAGCGGCGACGCTCTCGCCAGAGGACCCGCGGTT
TTCTGGAGTAAACACTATCTACATAGCTTGGCGTCATATGGGAGATCTCG
CTCGCACTCTCGGCAGAAAATGCAGACTATGTAGACGTTTAGTGCGGCTG
GGCTGTTGCCCCGCTATCAGCGTGAACCTACGATTCGCCAGAGAGCGTTG
CACGACACTACAGCAGTACACGAACAGCGGTAGCCTCCCTGGTATGCATG
TGTTATGGTCGTAGTATTGATCACGTTTTGATCAGGTTGCGGCTGCGATT
GCGACTGCAGAGCTGCCGACTTGTATTTATTCCAACCCTGCACCAGTACC
AGTGATAGAGCCAGCGTGCCAAACTTTTGCAACACTGCCCAACTTGCACT
GCCTGCCGCCGTTTGATGCTCTGTATGCAGGACGCAAGGCTTGCTCCTGT
TGAAAGCAGCAGAATAGCTCAGCTGGGGTGGCCGTAAGCCGCTCGAACAT
AGGGTGCCTTGATCCTCGACCCGTCGTTGAAACCGTCGCATCGGCCTGCC
GCGCCGCGAGTCACAAGCCCTCCTCGCCTTTCGACCAAAACCGTTCGTGC
GTGCTCGACTCTACGGTTGCCATGTGGGACTGATGTTGCCTGCCCCATGC
ATGCACGGCTTGAAACCTTTTGTTCTTCGCACGGCGTGGCCCGGCAGGTT
CGAGGGTGCTGTCGCCTCGACAAGAGCCAGGGGTGCGTGGTAACCAACTG
GCACGACCTGCTCAAGTACACGCACATGGGCAGGACGATAACCGCAGCGA
TGTGCGGGGTGAGCCAACACTTTTGCAGTCCCGCAGCAGCCGGAATACAT
AGTCTAGATGCGCTCCTAACTAGTTGCAGAGACCGCGGTTCGCGCCTGGC
AGACTGCGCCTACGGGGCGCGTTCATGGATGAGCGCGATGAGTTCCAAGG
ATGCACGTCATGGTTAATACTCCATAACAGTTGCCGCGAGAGGATAGGGG
AGTCCTGTTCGAGAAAAGCCTTGCCTCGGAATACACTTCTAAACGGCCCC
ATGGTTCGACGTGCATGCCGGGTGGGTTCGATATAGATGCCGGCAATGGC
GGCCTGTCTTTTTTGGGAGGGCGACGACTCCTCCCGACCACTTACTGCAG
GAGGGAAATGGGGGCTACGCAAGAGGGCGCGTAAAAGCATATGGCGAAAT
GATATTTTAGTTGCCAGTTCGAAGTAGTTTCCATGTTGGAGCTTGAAGGC
ATGTTTCTTGTTCTTGATCGCGGGCGTTAACTACCGTAATTGCTAGGTGG
CCTTCCGAGCCTCGCGTTTTCGGGCATCAGCCGCTCCTGTGTTCGAGACT
AAATAATATGTAGCAAGACGGACGTCGTGTCCTTACCGTGGCGAGCCTGG
TGATGGATGCGCTCACAGCTGTACAGCTATGCATAGCTCTTTTTTTTTGG
AACGAACCTCATGTTTCCGTCCCACTCATCCCTCGCAACCAACGTGTGCC
TCATCGTGCCCGTAGTCCCGACCACGTGAAAATTTGGGTATCGCAGGTGC
AGGCGACACCACGCGAACGGTACTGTGAGAAATATGCGTAATCGTGTTTG
TGTGTCCGTGTGTTTTTTTTTTGGGGGGGGGCTGGAGGGAAGACATGTTT
CCAAACGCGTTCGGACACCACAACCCCCGGGGTGAGGACATGAGCGCTCG
AGACAAGAGGGATAGCGCCATGGTCTAAGCGGCGAACAAGTTTACCAGTA
AAAGGTCCAGGACCTACCCACCTATTGTGGCTGGTAGGGACGATGGTGTG
TCTCGCCTGGCGCGGATCATGTCGATTATTGGATTTTGCTTTAGCTCCGA
CCTGCACCGCTCTTGCTCCTACCCCCGTGTCGACGACGTCTGACTACCGG
CCTGGCTCTGCTCTCGTCCAGGTCTTGACATGGCGAGGGCTAGGCTCCTT
GAAGGACTTCCACGCCCCGGAGGGTGGGATAGGACTAGTCCCAGCTGTGC
TCATCACCGCCGCGGTCTTGAGCTTGGCGGCAGCAGCGTCCATGAACTTC
CTGCACTTCAGAGTGAGAACATCACACGAAATGACCGTGTCCGCGGAGGT
TGAGTTGTCACCAGAACCATACTTTTGCTATTCGCGCTGGCCGACATCGT
CGCCGCCTACCTCTCTCGCTCCTGTGTCGCGTCTACACCAGAAGCTGTTG
TGGTCGCATTCTGCCAACGAGTGTCACTCATGGTGACAAGGGCCTTTGTT
TATTTGTTCTTGGCGTACATGCCCTCTAGTTGCGGGGAGACGTTCCTCAA
CCGTAAACAAGAGTATTGGAGGAGGCACGGGGTGGAATAGAACAAAGTAC
ACTCCGAACGGGTTTCAAACGCGAGAGGACATTCCCACCAAAAGCACCAG
CAGCAGCCGCAAACCAGGTTTCCTGTTGCATGGTGACTAGACTAAACTAG
CCTGAGGTTTAGTTGGTGGTGAGAGCCGACCAGCTTTTCTGTTGCCTGTG
GACTCTAATACAACTAGAGATCGATGTCGAGCGTCAAGCGATCTTTGTGG
GGTGAGTGTGCAATATACAGAAACCACACATACATGCTGGCTTACAATAA
TAACTTCCTCCGTCGCACCTCCGCCCCGCTCACCCGCCCCCCGTCGCCGT
TCCAGATGAAAGGCGTGCTGACGGAGTACGCCAAGCTCAAGCGCACATGA
CTCATGCCGGCCACCCGCCGCTAGTTTTACGCGTCATTGTAGCTAACATC
GTCGGGGGCACAAACAACAGTTCAAGCAAAGGGGGGTTGTTTGACTCCGT
AACATGTACAGGTCGTTGATGGATGTTGACGGGAAAACACTTCCACCGAG
GTAGATCTTACTTCAGTGCAGCCCTCGATGTTAATCTAACCACCCATTGC
TCGACTGTCGACAAGGAAAGAACGGGGAGACAGACGTGTGCCGTGGTTCA
GCCACCATGGATGTATTTCGCGGCCAGAGTGAGAATGAATCTTGTGTCAA
AACTGTTGATACATCAGGGACTTGTTGTGCGGACGCCTCCGCAGCATCGG
ACGAACTTGTGCGTGTGCGTTGGGACGTTGGACCTGGGTAGTGGGATGAG
GGGCACACTCGGTTGATGGAGTGCAGGGATGGATGGATCCATCGAAAGCA
TCAGGACAGGGATTGCTGCGCGTCTTGGTTGAGCCTTTGTAGGACTGTGT
AGAACACGCGTACCGATAAGTGATACTGTTGGTTTTGTGTTTGGATGGTG
AGTCTAACAATATATCGGAGATCGCACAGCGGCCAGTGTTGTAGACATCT
GATTCTGTACGCCTCGGGTGAAATAGTGTATTTTCAAGGACGGTCGAGCT
TGGGCCCCTCTCGGCCAAGCATTCATATTTTCTTCTTTCTGGCGTAATTT
TTTTTTTCGCATAGCCCCG back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig1026:21003..24821- >mRNA_E-siliculosus-1a_F_contig1026.227.1 ID=mRNA_E-siliculosus-1a_F_contig1026.227.1|Name=mRNA_E-siliculosus-1a_F_contig1026.227.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1146bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig1026:21003..24821- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGCCCGCAGCAACAGCTCACAAGGTGTCTGCCTCTAACCACAAGCTGTA
CCACGAGGCCCTCAGGTTCACGACCATCTACGTCTACTTGGACGTAGCGT
ACGCGACGCTGCTCTTGGCGGCAGCGCTGCACCTCAGTGGGGTGCCTGTG
GGTCTGATCCTGGGGCTAGATGTGCCGCTCAAGAAGTCAGAGGCTGGGGG
GGAAGGGGGGTTGGTGCGATCGGGGGCCCTGAGCTTAGCCACTGCCGGGG
TGATGGGTCTCCTGGTTGGTGTTATGATGCCCGCAGCAACAGCTCACAAG
GTGTCTGCCTCTAACCACAAGCTGTACCACGAGGCCCTCAGGTTCACGAC
CATCTACGTCTACTTGGACGTAGCGTACGCGACGCTGCTCTTGGCGGCAG
CGCTGCACCTCAGTGGGGTGCCTGTGGGTCTGATCCTGGGGCTAGATGTG
CCGCTCAAGAAGTCAGAGGCTGGGGGGGAAGGGGGGTTGGTGCGATCGGG
GGCCCTGAGCTTAGCCACTGCCGGGGTGATGGGTCTCCTGGTTGGTGTTA
TGGTTCGAGGGTGCTGTCGCCTCGACAAGAGCCAGGGGTGCGTGGTAACC
AACTGGCACGACCTGCTCAAGTACACGCACATGGGCAGGACGATAACCGC
AGCGATGTGCGGGGTTCGAGGGTGCTGTCGCCTCGACAAGAGCCAGGGGT
GCGTGGTAACCAACTGGCACGACCTGCTCAAGTACACGCACATGGGCAGG
ACGATAACCGCAGCGATGTGCGGGGTCTTGACATGGCGAGGGCTAGGCTC
CTTGAAGGACTTCCACGCCCCGGAGGGTGGGATAGGACTAGTCCCAGCTG
TGCTCATCACCGCCGCGGTCTTGAGCTTGGCGGCAGCAGCGTCCATGAAC
TTCCTGCACTTCAGAGTCTTGACATGGCGAGGGCTAGGCTCCTTGAAGGA
CTTCCACGCCCCGGAGGGTGGGATAGGACTAGTCCCAGCTGTGCTCATCA
CCGCCGCGGTCTTGAGCTTGGCGGCAGCAGCGTCCATGAACTTCCTGCAC
TTCAGAATGAAAGGCGTGCTGACGGAGTACGCCAAGCTCAAGCGCACATG
AATGAAAGGCGTGCTGACGGAGTACGCCAAGCTCAAGCGCACATGA back to top
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